ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4p08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X15692.1|HVLP90 Barley mRNA for chloroplast low molecular mass early light-inducible protein (ELIP) (clone HV90) Length = 660 Score = 660 bits (333), Expect = 0.0 Identities = 405/429 (94%) Strand = Plus / Minus Query: 74 atgtcctactagataagtacaagttgtgttatcgtgtcggcaagaaagctagtttattct 133 |||||||||||| |||||||| ||||||||||| ||||| || ||||||| |||||||| Sbjct: 607 atgtcctactagctaagtacatgttgtgttatcctgtcgacagcaaagctattttattct 548 Query: 134 acacgttgatgaagggggcgcccgtgatgatctccgtggccgccagagcgacgagtccga 193 ||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||||||||||| Sbjct: 547 acacgttgatgaaaggcgcgccggtgatgatctcggtggcggccagcgcgacgagtccga 488 Query: 194 gcatggcgaaacggccattccagagctccgcgttggcgttcatgatggtgccggctctgc 253 |||||||||| ||||| |||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 487 gcatggcgaagcggccgttccagagttccgcgttggcgttcatgatggcgccggctctgc 428 Query: 254 cctcggcgctctcgccctggagaagcggcaccagcgacgccatggacagcaccgccacgg 313 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 427 cctcggcgctctcgccctggagcagcggcaccagcgacgccatggacagcaccgccacgg 368 Query: 314 tgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagaggagcccgtcgccgc 373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 tgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagaggagcccgtcgccgc 308 Query: 374 gacctgcctccaccgcaagtgccgttacgaagcctaccatggctagccgcccgttgatgc 433 | ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| Sbjct: 307 gccctgcctccaccgcaagcgccgtcacgaagcccaccatggctagccgcccgttgatgc 248 Query: 434 gctccggcgccgggccgctgaacgccatcgcgtcccagatcgaggtgctcgccttgggtt 493 |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 247 gctccggcgcagggccgctgaacgccatctcgtcccagatcgaggtgctcgccttgggtt 188 Query: 494 tgtttggcg 502 ||||||||| Sbjct: 187 tgtttggcg 179
>emb|X15691.1|HVLP60 Barley mRNA for chloroplast low molecular mass early light-inducible protein (ELIP) (clone HV60) Length = 764 Score = 620 bits (313), Expect = e-174 Identities = 400/429 (93%) Strand = Plus / Minus Query: 74 atgtcctactagataagtacaagttgtgttatcgtgtcggcaagaaagctagtttattct 133 |||||||||||| |||||||| ||||||||||| |||| || ||||||| ||| |||| Sbjct: 688 atgtcctactagctaagtacaggttgtgttatccggtcgacagcaaagctattttcttct 629 Query: 134 acacgttgatgaagggggcgcccgtgatgatctccgtggccgccagagcgacgagtccga 193 |||||||||||||||||| ||| ||||||||||| ||||| || || ||||||||||||| Sbjct: 628 acacgttgatgaagggggtgccggtgatgatctcggtggcggcgagcgcgacgagtccga 569 Query: 194 gcatggcgaaacggccattccagagctccgcgttggcgttcatgatggtgccggctctgc 253 ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 568 tcatggcgaagcggccgttccagagctccgcgttggcgttcatgatggcgccggctctgc 509 Query: 254 cctcggcgctctcgccctggagaagcggcaccagcgacgccatggacagcaccgccacgg 313 |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct: 508 cctcggcgctctcgccctggagcagcggcaccagcgacgccatggacagcatcgccacgg 449 Query: 314 tgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagaggagcccgtcgccgc 373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 tgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagaggagcccgtcgccgc 389 Query: 374 gacctgcctccaccgcaagtgccgttacgaagcctaccatggctagccgcccgttgatgc 433 | ||||||||||| || || ||||| |||||||| ||||||||||||||||||||||||| Sbjct: 388 ggcctgcctccacagccagcgccgtcacgaagcccaccatggctagccgcccgttgatgc 329 Query: 434 gctccggcgccgggccgctgaacgccatcgcgtcccagatcgaggtgctcgccttgggtt 493 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 328 gctccggcgcagggccgctgaacgccatcgcgtcccagatggaggtgctcgccttgggtt 269 Query: 494 tgtttggcg 502 ||||||||| Sbjct: 268 tgtttggcg 260
>dbj|AB019617.1| Triticum aestivum wcr (wheat cold-regulated) 12 mRNA for early light-inducible protein (ELIP), complete cds Length = 818 Score = 470 bits (237), Expect = e-129 Identities = 382/429 (89%), Gaps = 1/429 (0%) Strand = Plus / Minus Query: 74 atgtcctactagataagtacaagttgtgttatcgtgtcggcaagaaagctagtttattct 133 ||||||||||| |||||||| ||||||| || |||| ||| ||||||| || || | Sbjct: 696 atgtcctactaactaagtacagtttgtgttgtccggtcgacaacaaagcta-ttagtttt 638 Query: 134 acacgttgatgaagggggcgcccgtgatgatctccgtggccgccagagcgacgagtccga 193 |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 637 acacgttgatgaagggcgcgccagtgatgatctccgttgccgccagagcgacgagtccga 578 Query: 194 gcatggcgaaacggccattccagagctccgcgttggcgttcatgatggtgccggctctgc 253 |||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||| Sbjct: 577 gcatggcgaagcggccgttccagagctccgcgttggcgttcatgatgataccggctctgc 518 Query: 254 cctcggcgctctcgccctggagaagcggcaccagcgacgccatggacagcaccgccacgg 313 ||||||||||||| || ||||| ||||||||||| || | | ||| ||| |||||||| Sbjct: 517 cctcggcgctctctccttggagcagcggcaccagagaagatacggatagccacgccacgg 458 Query: 314 tgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagaggagcccgtcgccgc 373 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 457 agtaggcgaaccacgcctgcccggtgccgctgccgagctgcgaaaggagcccgtcgccgc 398 Query: 374 gacctgcctccaccgcaagtgccgttacgaagcctaccatggctagccgcccgttgatgc 433 | ||||||||||| || || ||||| ||||| || |||||||| || ||||| || |||| Sbjct: 397 gccctgcctccacggcgagcgccgtcacgaaacccaccatggccaggcgcccattaatgc 338 Query: 434 gctccggcgccgggccgctgaacgccatcgcgtcccagatcgaggtgctcgccttgggtt 493 |||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct: 337 gctccggcgcagggccgctgaacgccagcgcgtcccagatagaggtgctcgccttgggtt 278 Query: 494 tgtttggcg 502 ||||||||| Sbjct: 277 tgtttggcg 269
>gb|AF365951.1|AF365951 Zea mays early light-inducible protein ELIP mRNA, complete cds; nuclear gene for chloroplast product Length = 852 Score = 149 bits (75), Expect = 1e-32 Identities = 278/345 (80%), Gaps = 3/345 (0%) Strand = Plus / Minus Query: 128 tattctacacgttgatgaagggggcgcccgtgatgatctccgtggccgccagagcgacga 187 |||| |||||||||| |||||| ||||| || | | ||| ||| | || || ||||||| Sbjct: 657 tattttacacgttgacgaagggcgcgccggtaaggtactcggtgacggcgagcgcgacga 598 Query: 188 gtccgagcatggcgaaacggccattccagagctccgcgttggcgttcatgatggtgccgg 247 | |||||||||||||| ||||| ||||||||||| |||| |||| |||||| |||| Sbjct: 597 ggccgagcatggcgaagcggccgttccagagctcggcgtcggcggtcatgaaccggccgc 538 Query: 248 ctctgccctcggcgctctcgccctggagaagcggcaccagcgacgccatggacagcaccg 307 ||||||||||||||||| |||||||| ||||||||||| ||||| |||||| || | Sbjct: 537 tcctgccctcggcgctctccccctggagcagcggcaccagggacgcggcggacaggacgg 478 Query: 308 ccacggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagaggagcccgt 367 | ||||||| ||||||||||| | |||| |||| |||| || ||||||| |||| Sbjct: 477 cggcggtgtacgcgaaccacgcgaggccggcgccgttgcctggc---gagaggatgccgt 421 Query: 368 cgccgcgacctgcctccaccgcaagtgccgttacgaagcctaccatggctagccgcccgt 427 ||||||| ||||| || || || || | |||||||| ||||| || |||||||||| Sbjct: 420 cgccgcgggtggcctcgacggcgagcgcggacacgaagcccaccatcgccagccgcccgt 361 Query: 428 tgatgcgctccggcgccgggccgctgaacgccatcgcgtcccaga 472 |||| ||||||||||| || ||||||||||||| ||||||||||| Sbjct: 360 tgatccgctccggcgcgggcccgctgaacgccagcgcgtcccaga 316
>ref|XM_476844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 603 Score = 139 bits (70), Expect = 1e-29 Identities = 235/290 (81%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagagctccgcgttggcgttcatgatg 240 |||||||| |||||||||||||| ||||| ||||||||||| |||| |||| |||| | | Sbjct: 554 gcgacgaggccgagcatggcgaagcggccgttccagagctcagcgtcggcgctcatcacg 495 Query: 241 gtgccggctctgccctcggcgctctcgccctggagaagcggcaccagcgacgccatggac 300 |||| || |||| ||||||||||| |||| |||||||||||||||||| ||| Sbjct: 494 ccgccgctcctcgcctccgcgctctcgccgcggagcagcggcaccagcgacgccgcggag 435 Query: 301 agcaccgccacggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagagg 360 ||||| || ||||| |||||||||||| ||||| ||||||||| |||| ||| Sbjct: 434 agcacggcggcggtggcggcgaaccacgcgagcccgcccccgctgccggcctgctccagg 375 Query: 361 agcccgtcgccgcgacctgcctccaccgcaagtgccgttacgaagcctaccatggctagc 420 |||||| ||||||| |||||||| || || |||| ||||| || ||||| || ||| Sbjct: 374 agcccgccgccgcgcgacgcctccacggcgagcgccgacacgaaccccaccatcgccagc 315 Query: 421 cgcccgttgatgcgctccggcgccgggccgctgaacgccatcgcgtccca 470 ||||||||||| |||||||||||||| ||||||||||||| | ||||||| Sbjct: 314 cgcccgttgatccgctccggcgccggcccgctgaacgccagcacgtccca 265
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 139 bits (70), Expect = 1e-29 Identities = 235/290 (81%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagagctccgcgttggcgttcatgatg 240 |||||||| |||||||||||||| ||||| ||||||||||| |||| |||| |||| | | Sbjct: 4176344 gcgacgaggccgagcatggcgaagcggccgttccagagctcagcgtcggcgctcatcacg 4176285 Query: 241 gtgccggctctgccctcggcgctctcgccctggagaagcggcaccagcgacgccatggac 300 |||| || |||| ||||||||||| |||| |||||||||||||||||| ||| Sbjct: 4176284 ccgccgctcctcgcctccgcgctctcgccgcggagcagcggcaccagcgacgccgcggag 4176225 Query: 301 agcaccgccacggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagagg 360 ||||| || ||||| |||||||||||| ||||| ||||||||| |||| ||| Sbjct: 4176224 agcacggcggcggtggcggcgaaccacgcgagcccgcccccgctgccggcctgctccagg 4176165 Query: 361 agcccgtcgccgcgacctgcctccaccgcaagtgccgttacgaagcctaccatggctagc 420 |||||| ||||||| |||||||| || || |||| ||||| || ||||| || ||| Sbjct: 4176164 agcccgccgccgcgcgacgcctccacggcgagcgccgacacgaaccccaccatcgccagc 4176105 Query: 421 cgcccgttgatgcgctccggcgccgggccgctgaacgccatcgcgtccca 470 ||||||||||| |||||||||||||| ||||||||||||| | ||||||| Sbjct: 4176104 cgcccgttgatccgctccggcgccggcccgctgaacgccagcacgtccca 4176055 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagagctccgcgttggcgttcatgatg 240 |||||||| |||||||||||||| ||||| ||||||||||| |||| |||| |||| | | Sbjct: 4178785 gcgacgaggccgagcatggcgaagcggccgttccagagctcggcgtcggcgctcatcacg 4178726 Query: 241 gtgccggctctgccctcggcgctctcgccctggagaagcggcaccagcgacgccatggac 300 |||| || |||| ||||||||||| |||| |||||||||||||||||| ||| Sbjct: 4178725 ccgccgctcctcgcctccgcgctctcgccgcggagcagcggcaccagcgacgccgcggag 4178666 Query: 301 agcaccgccacggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagagg 360 ||||| | ||||| |||||||||||| ||||| ||||||||| |||| ||| Sbjct: 4178665 agcacggtggcggtggcggcgaaccacgcgagcccgtccccgctgccggcctgctccagg 4178606 Query: 361 agcccgtcgccgcgacctgcctccaccgcaagtgccgttacgaagcctaccatggctagc 420 |||||| |||| || |||||||| || || |||| ||||| || ||||| || ||| Sbjct: 4178605 agcccgccgccccgcgacgcctccacggcgagcgccgacacgaaccccaccatcgccagc 4178546 Query: 421 cgcccgttgatgcgctccggcgccgggccgctgaacgccatcgcgtccca 470 ||||||||||| |||||||||||||| ||||||||||||| | ||||||| Sbjct: 4178545 cgcccgttgatccgctccggcgccggcccgctgaacgccagcacgtccca 4178496 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 cgccatcgcgtcccagatcg 475 |||||||||||||||||||| Sbjct: 3291286 cgccatcgcgtcccagatcg 3291267
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 139 bits (70), Expect = 1e-29 Identities = 235/290 (81%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagagctccgcgttggcgttcatgatg 240 |||||||| |||||||||||||| ||||| ||||||||||| |||| |||| |||| | | Sbjct: 59966 gcgacgaggccgagcatggcgaagcggccgttccagagctcagcgtcggcgctcatcacg 59907 Query: 241 gtgccggctctgccctcggcgctctcgccctggagaagcggcaccagcgacgccatggac 300 |||| || |||| ||||||||||| |||| |||||||||||||||||| ||| Sbjct: 59906 ccgccgctcctcgcctccgcgctctcgccgcggagcagcggcaccagcgacgccgcggag 59847 Query: 301 agcaccgccacggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagagg 360 ||||| || ||||| |||||||||||| ||||| ||||||||| |||| ||| Sbjct: 59846 agcacggcggcggtggcggcgaaccacgcgagcccgcccccgctgccggcctgctccagg 59787 Query: 361 agcccgtcgccgcgacctgcctccaccgcaagtgccgttacgaagcctaccatggctagc 420 |||||| ||||||| |||||||| || || |||| ||||| || ||||| || ||| Sbjct: 59786 agcccgccgccgcgcgacgcctccacggcgagcgccgacacgaaccccaccatcgccagc 59727 Query: 421 cgcccgttgatgcgctccggcgccgggccgctgaacgccatcgcgtccca 470 ||||||||||| |||||||||||||| ||||||||||||| | ||||||| Sbjct: 59726 cgcccgttgatccgctccggcgccggcccgctgaacgccagcacgtccca 59677 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagagctccgcgttggcgttcatgatg 240 |||||||| |||||||||||||| ||||| ||||||||||| |||| |||| |||| | | Sbjct: 62407 gcgacgaggccgagcatggcgaagcggccgttccagagctcggcgtcggcgctcatcacg 62348 Query: 241 gtgccggctctgccctcggcgctctcgccctggagaagcggcaccagcgacgccatggac 300 |||| || |||| ||||||||||| |||| |||||||||||||||||| ||| Sbjct: 62347 ccgccgctcctcgcctccgcgctctcgccgcggagcagcggcaccagcgacgccgcggag 62288 Query: 301 agcaccgccacggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagagg 360 ||||| | ||||| |||||||||||| ||||| ||||||||| |||| ||| Sbjct: 62287 agcacggtggcggtggcggcgaaccacgcgagcccgtccccgctgccggcctgctccagg 62228 Query: 361 agcccgtcgccgcgacctgcctccaccgcaagtgccgttacgaagcctaccatggctagc 420 |||||| |||| || |||||||| || || |||| ||||| || ||||| || ||| Sbjct: 62227 agcccgccgccccgcgacgcctccacggcgagcgccgacacgaaccccaccatcgccagc 62168 Query: 421 cgcccgttgatgcgctccggcgccgggccgctgaacgccatcgcgtccca 470 ||||||||||| |||||||||||||| ||||||||||||| | ||||||| Sbjct: 62167 cgcccgttgatccgctccggcgccggcccgctgaacgccagcacgtccca 62118
>ref|NM_188763.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagagctccgcgttggcgttcatgatg 240 |||||||| |||||||||||||| || || ||||||||||| |||| |||| |||| | | Sbjct: 560 gcgacgaggccgagcatggcgaaccgcccgttccagagctcggcgtcggcgctcatcacg 501 Query: 241 gtgccggctctgccctcggcgctctcgccctggagaagcggcaccagcgacgccatggac 300 |||| || |||| ||| ||||||| |||| |||||||||||||||||| ||| Sbjct: 500 ccgccgctcctcgcctccgcggtctcgccgcggagcagcggcaccagcgacgccgcggag 441 Query: 301 agcaccgccacggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagagg 360 ||||| || ||||| ||||||||||||| ||||| | | ||||||| ||| ||| Sbjct: 440 agcacggcggcggtggcggcgaaccacgccagcccgctccagctgccggcctggtccagg 381 Query: 361 agcccgtcgccgcgacctgcctccaccgcaagtgccgttacgaagcctaccatggctagc 420 |||||| ||||||| |||||||| || || |||| ||||| || ||||| || ||| Sbjct: 380 agcccgccgccgcgcgacgcctccacggccagcgccgacacgaaccccaccatcgccagc 321 Query: 421 cgcccgttgatgcgctccggcgccgggccgctgaacgccatcgcgtccca 470 ||||||||||| |||||||||||||| ||||||||||||| | ||||||| Sbjct: 320 cgcccgttgatccgctccggcgccggcccgctgaacgccagcacgtccca 271
>ref|XM_476845.1| Oryza sativa (japonica cultivar-group), mRNA Length = 564 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagagctccgcgttggcgttcatgatg 240 |||||||| |||||||||||||| ||||| ||||||||||| |||| |||| |||| | | Sbjct: 515 gcgacgaggccgagcatggcgaagcggccgttccagagctcggcgtcggcgctcatcacg 456 Query: 241 gtgccggctctgccctcggcgctctcgccctggagaagcggcaccagcgacgccatggac 300 |||| || |||| ||||||||||| |||| |||||||||||||||||| ||| Sbjct: 455 ccgccgctcctcgcctccgcgctctcgccgcggagcagcggcaccagcgacgccgcggag 396 Query: 301 agcaccgccacggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagagg 360 ||||| | ||||| |||||||||||| ||||| ||||||||| |||| ||| Sbjct: 395 agcacggtggcggtggcggcgaaccacgcgagcccgtccccgctgccggcctgctccagg 336 Query: 361 agcccgtcgccgcgacctgcctccaccgcaagtgccgttacgaagcctaccatggctagc 420 |||||| |||| || |||||||| || || |||| ||||| || ||||| || ||| Sbjct: 335 agcccgccgccccgcgacgcctccacggcgagcgccgacacgaaccccaccatcgccagc 276 Query: 421 cgcccgttgatgcgctccggcgccgggccgctgaacgccatcgcgtccca 470 ||||||||||| |||||||||||||| ||||||||||||| | ||||||| Sbjct: 275 cgcccgttgatccgctccggcgccggcccgctgaacgccagcacgtccca 226
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence Length = 182756 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagagctccgcgttggcgttcatgatg 240 |||||||| |||||||||||||| || || ||||||||||| |||| |||| |||| | | Sbjct: 25772 gcgacgaggccgagcatggcgaaccgcccgttccagagctcggcgtcggcgctcatcacg 25713 Query: 241 gtgccggctctgccctcggcgctctcgccctggagaagcggcaccagcgacgccatggac 300 |||| || |||| ||| ||||||| |||| |||||||||||||||||| ||| Sbjct: 25712 ccgccgctcctcgcctccgcggtctcgccgcggagcagcggcaccagcgacgccgcggag 25653 Query: 301 agcaccgccacggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagagg 360 ||||| || ||||| ||||||||||||| ||||| | | ||||||| ||| ||| Sbjct: 25652 agcacggcggcggtggcggcgaaccacgccagcccgctccagctgccggcctggtccagg 25593 Query: 361 agcccgtcgccgcgacctgcctccaccgcaagtgccgttacgaagcctaccatggctagc 420 |||||| ||||||| |||||||| || || |||| ||||| || ||||| || ||| Sbjct: 25592 agcccgccgccgcgcgacgcctccacggccagcgccgacacgaaccccaccatcgccagc 25533 Query: 421 cgcccgttgatgcgctccggcgccgggccgctgaacgccatcgcgtccca 470 ||||||||||| |||||||||||||| ||||||||||||| | ||||||| Sbjct: 25532 cgcccgttgatccgctccggcgccggcccgctgaacgccagcacgtccca 25483
>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10 Length = 150379 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagagctccgcgttggcgttcatgatg 240 |||||||| |||||||||||||| || || ||||||||||| |||| |||| |||| | | Sbjct: 58310 gcgacgaggccgagcatggcgaaccgcccgttccagagctcggcgtcggcgctcatcacg 58251 Query: 241 gtgccggctctgccctcggcgctctcgccctggagaagcggcaccagcgacgccatggac 300 |||| || |||| ||| ||||||| |||| |||||||||||||||||| ||| Sbjct: 58250 ccgccgctcctcgcctccgcggtctcgccgcggagcagcggcaccagcgacgccgcggag 58191 Query: 301 agcaccgccacggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagagg 360 ||||| || ||||| ||||||||||||| ||||| | | ||||||| ||| ||| Sbjct: 58190 agcacggcggcggtggcggcgaaccacgccagcccgctccagctgccggcctggtccagg 58131 Query: 361 agcccgtcgccgcgacctgcctccaccgcaagtgccgttacgaagcctaccatggctagc 420 |||||| ||||||| |||||||| || || |||| ||||| || ||||| || ||| Sbjct: 58130 agcccgccgccgcgcgacgcctccacggccagcgccgacacgaaccccaccatcgccagc 58071 Query: 421 cgcccgttgatgcgctccggcgccgggccgctgaacgccatcgcgtccca 470 ||||||||||| |||||||||||||| ||||||||||||| | ||||||| Sbjct: 58070 cgcccgttgatccgctccggcgccggcccgctgaacgccagcacgtccca 58021
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagagctccgcgttggcgttcatgatg 240 |||||||| |||||||||||||| || || ||||||||||| |||| |||| |||| | | Sbjct: 8061659 gcgacgaggccgagcatggcgaaccgcccgttccagagctcggcgtcggcgctcatcacg 8061600 Query: 241 gtgccggctctgccctcggcgctctcgccctggagaagcggcaccagcgacgccatggac 300 |||| || |||| ||| ||||||| |||| |||||||||||||||||| ||| Sbjct: 8061599 ccgccgctcctcgcctccgcggtctcgccgcggagcagcggcaccagcgacgccgcggag 8061540 Query: 301 agcaccgccacggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagagg 360 ||||| || ||||| ||||||||||||| ||||| | | ||||||| ||| ||| Sbjct: 8061539 agcacggcggcggtggcggcgaaccacgccagcccgctccagctgccggcctggtccagg 8061480 Query: 361 agcccgtcgccgcgacctgcctccaccgcaagtgccgttacgaagcctaccatggctagc 420 |||||| ||||||| |||||||| || || |||| ||||| || ||||| || ||| Sbjct: 8061479 agcccgccgccgcgcgacgcctccacggccagcgccgacacgaaccccaccatcgccagc 8061420 Query: 421 cgcccgttgatgcgctccggcgccgggccgctgaacgccatcgcgtccca 470 ||||||||||| |||||||||||||| ||||||||||||| | ||||||| Sbjct: 8061419 cgcccgttgatccgctccggcgccggcccgctgaacgccagcacgtccca 8061370
>dbj|AK062972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E06, full insert sequence Length = 942 Score = 123 bits (62), Expect = 6e-25 Identities = 233/290 (80%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagagctccgcgttggcgttcatgatg 240 |||||||| |||||||||||||| || || ||||||||||| |||| |||| |||| | | Sbjct: 709 gcgacgaggccgagcatggcgaaccgcccgttccagagctcggcgtcggcgctcatcacg 650 Query: 241 gtgccggctctgccctcggcgctctcgccctggagaagcggcaccagcgacgccatggac 300 |||| || |||| ||| ||||||| |||| |||||||||||||||||| ||| Sbjct: 649 ccgccgctcctcgcctccgcggtctcgccgcggagcagcggcaccagcgacgccgcggag 590 Query: 301 agcaccgccacggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagagg 360 ||||| || ||||| ||||||||||||| ||||| | | ||||||| ||| ||| Sbjct: 589 agcacggcggcggtggcggcgaaccacgccagcccgctccagctgccggcctggtccagg 530 Query: 361 agcccgtcgccgcgacctgcctccaccgcaagtgccgttacgaagcctaccatggctagc 420 |||||| ||||||| |||||||| || || |||| ||||| || ||||| || ||| Sbjct: 529 agcccgccgccgcgcgacgcctccacggccagcgccgacacgaaccccaccatcgccagc 470 Query: 421 cgcccgttgatgcgctccggcgccgggccgctgaacgccatcgcgtccca 470 ||||||||||| |||||||||||||| ||||||||||||| | ||||||| Sbjct: 469 cgcccgttgatccgctccggcgccggcccgctgaacgccagcacgtccca 420
>emb|X15693.1|HVLP58 Barley mRNA for chloroplast high molecular mass early light-inducible protein (ELIP) (clone HV58) Length = 860 Score = 117 bits (59), Expect = 4e-23 Identities = 74/79 (93%) Strand = Plus / Minus Query: 400 acgaagcctaccatggctagccgcccgttgatgcgctccggcgccgggccgctgaacgcc 459 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct: 507 acgaagcctaccatggccagccggccgttgatgcgctccggcgccgggccgctgaacgcg 448 Query: 460 atcgcgtcccagatcgagg 478 | ||||||||||| ||||| Sbjct: 447 agcgcgtcccagaccgagg 429 Score = 71.9 bits (36), Expect = 2e-09 Identities = 126/156 (80%) Strand = Plus / Minus Query: 138 gttgatgaagggggcgcccgtgatgatctccgtggccgccagagcgacgagtccgagcat 197 ||||| ||| || ||||| ||||||| ||| ||||| || || |||||||| |||||||| Sbjct: 772 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 713 Query: 198 ggcgaaacggccattccagagctccgcgttggcgttcatgatggtgccggctctgccctc 257 ||||| ||||| ||||||||||| |||| |||| || |||| || || | ||| ||| Sbjct: 712 agcgaagcggccgttccagagctcggcgtcggcgctccagatgccgctggatttgctctc 653 Query: 258 ggcgctctcgccctggagaagcggcaccagcgacgc 293 |||||| |||||| || ||||||| ||||||||| Sbjct: 652 cacgctctggccctgcagcagcggcagcagcgacgc 617
>gb|AY105095.1| Zea mays PCO131564 mRNA sequence Length = 907 Score = 115 bits (58), Expect = 1e-22 Identities = 151/182 (82%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagagctccgcgttggcgttcatgatg 240 |||||||| |||||||||||||| ||||| ||||||||||| ||||||||| |||||| | Sbjct: 226 gcgacgaggccgagcatggcgaagcggccgttccagagctcggcgttggcgctcatgacg 167 Query: 241 gtgccggctctgccctcggcgctctcgccctggagaagcggcaccagcgacgccatggac 300 | |||| ||| |||||||||| |||||| ||| |||||||||||||| |||| |||| Sbjct: 166 gcgccgctcctggcctcggcgctgtcgcccctgagcagcggcaccagcgaggccacggac 107 Query: 301 agcaccgccacggtgtaggcgaaccacgcctgcccggtgccgctgccgagctgcgagagg 360 ||||| || | ||| |||||||| || |||||| ||||||||| |||||||||| Sbjct: 106 agcacggcagccgtggccgcgaaccaggcgagcccggacccgctgccggcctgcgagagg 47 Query: 361 ag 362 || Sbjct: 46 ag 45
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 379 gcctccaccgcaagtgccgttacgaagcctaccatggctagccgcccgttgatgcgctcc 438 |||||||| || || |||| ||||| || ||||| || |||||||||||||| ||||| Sbjct: 9470725 gcctccacggcgagcgccgacacgaaccccaccatcgccagccgcccgttgatcggctcc 9470784 Query: 439 ggcgccgggccgctgaacgccatcgcgtccca 470 |||||||| ||||||||||||| | ||||||| Sbjct: 9470785 ggcgccggcccgctgaacgccagcacgtccca 9470816
>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0006C08 Length = 151987 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 379 gcctccaccgcaagtgccgttacgaagcctaccatggctagccgcccgttgatgcgctcc 438 |||||||| || || |||| ||||| || ||||| || |||||||||||||| ||||| Sbjct: 84286 gcctccacggcgagcgccgacacgaaccccaccatcgccagccgcccgttgatcggctcc 84345 Query: 439 ggcgccgggccgctgaacgccatcgcgtccca 470 |||||||| ||||||||||||| | ||||||| Sbjct: 84346 ggcgccggcccgctgaacgccagcacgtccca 84377
>ref|XM_468708.1| Oryza sativa (japonica cultivar-group), mRNA Length = 669 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 400 acgaagcctaccatggctagccgcccgttgatgcgctccggcgccgggccgctgaacgcc 459 ||||| || ||||| || |||||||||||||| ||||||| ||||| |||||||||||| Sbjct: 320 acgaaccccaccatcgccagccgcccgttgatccgctccgttgccggcccgctgaacgcc 261 Query: 460 atcgcgtccca 470 | | ||||||| Sbjct: 260 agcacgtccca 250
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 400 acgaagcctaccatggctagccgcccgttgatgcgctccggcgccgggccgctgaacgcc 459 ||||| || ||||| || |||||||||||||| ||||||| ||||| |||||||||||| Sbjct: 17148451 acgaaccccaccatcgccagccgcccgttgatccgctccgttgccggcccgctgaacgcc 17148510 Query: 460 atcgcgtccca 470 | | ||||||| Sbjct: 17148511 agcacgtccca 17148521
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete sequence Length = 153247 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 400 acgaagcctaccatggctagccgcccgttgatgcgctccggcgccgggccgctgaacgcc 459 ||||| || ||||| || |||||||||||||| ||||||| ||||| |||||||||||| Sbjct: 39844 acgaaccccaccatcgccagccgcccgttgatccgctccgttgccggcccgctgaacgcc 39903 Query: 460 atcgcgtccca 470 | | ||||||| Sbjct: 39904 agcacgtccca 39914
>emb|AL731611.2|OSJN00253 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D08, complete sequence Length = 142814 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 400 acgaagcctaccatggctagccgcccgttgatgcgctccggcgccgggccgctgaacgcc 459 ||||| || ||||| || ||||||| |||||| ||||||||||||| |||||||||||| Sbjct: 137646 acgaaccccaccatcgccagccgcctgttgatcggctccggcgccggcccgctgaacgcc 137705 Query: 460 atcgcgtccca 470 | | ||||||| Sbjct: 137706 agcacgtccca 137716
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 400 acgaagcctaccatggctagccgcccgttgatgcgctccggcgccgggccgctgaacgcc 459 ||||| || ||||| || ||||||| |||||| ||||||||||||| |||||||||||| Sbjct: 11128991 acgaaccccaccatcgccagccgcctgttgatcggctccggcgccggcccgctgaacgcc 11129050 Query: 460 atcgcgtccca 470 | | ||||||| Sbjct: 11129051 agcacgtccca 11129061
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 400 acgaagcctaccatggctagccgcccgttgatgcgctccggcgccgggccgctgaacgcc 459 ||||| || ||||| || |||||||||||||| ||||||| ||||| |||||||||||| Sbjct: 17142020 acgaaccccaccatcgccagccgcccgttgatccgctccgttgccggcccgctgaacgcc 17142079 Query: 460 atcgcgtccca 470 | | ||||||| Sbjct: 17142080 agcacgtccca 17142090
>gb|AF017356.1|AF017356 Oryza sativa low molecular early light-inducible protein mRNA, complete cds Length = 818 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 400 acgaagcctaccatggctagccgcccgttgatgcgctccggcgccgggccgctgaacgcc 459 ||||| || ||||| || |||||||||||||| || ||||||||||| ||| |||||||| Sbjct: 400 acgaaccccaccatcgccagccgcccgttgatccgttccggcgccggcccgttgaacgcc 341 Query: 460 atcgcgtccca 470 | | ||||||| Sbjct: 340 agcacgtccca 330 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagag 218 |||||||| |||||||||||||| ||||| |||||||| Sbjct: 618 gcgacgagcccgagcatggcgaagcggccgttccagag 581
>gb|AF017357.1|AF017357 Oryza sativa low molecular early light-inducible protein mRNA, complete cds Length = 883 Score = 54.0 bits (27), Expect = 5e-04 Identities = 61/71 (85%), Gaps = 1/71 (1%) Strand = Plus / Minus Query: 400 acgaagcctaccatggctagccgcccgttgatgcgctccggcgccgggccgctgaacgcc 459 ||||| || ||||| || |||||||||||||| || ||||||||||| ||| |||||||| Sbjct: 464 acgaaccccaccatcgccagccgcccgttgatccgttccggcgccggcccg-tgaacgcc 406 Query: 460 atcgcgtccca 470 | | ||||||| Sbjct: 405 agcacgtccca 395 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggccattccagag 218 |||||||| |||||||||||||| ||||| |||||||| Sbjct: 683 gcgacgagcccgagcatggcgaagcggccgttccagag 646
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 281 gcaccagcgacgccatggacagcaccg 307 |||||||||||||||| |||||||||| Sbjct: 926709 gcaccagcgacgccatcgacagcaccg 926683
>ref|NM_210365.1| Eremothecium gossypii AER153Wp (AER153W), mRNA Length = 2247 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 281 gcaccagcgacgccatggacagcaccg 307 |||||||||||||||| |||||||||| Sbjct: 760 gcaccagcgacgccatcgacagcaccg 734
>ref|XM_482221.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1802 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 ccagcgacgccatggacagca 304 ||||||||||||||||||||| Sbjct: 590 ccagcgacgccatggacagca 570
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 ccagcgacgccatggacagca 304 ||||||||||||||||||||| Sbjct: 18770287 ccagcgacgccatggacagca 18770267
>dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1123_G08 Length = 146944 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 ccagcgacgccatggacagca 304 ||||||||||||||||||||| Sbjct: 73736 ccagcgacgccatggacagca 73716
>dbj|AK069665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027H24, full insert sequence Length = 1802 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 ccagcgacgccatggacagca 304 ||||||||||||||||||||| Sbjct: 590 ccagcgacgccatggacagca 570
>dbj|D85513.1| Oryza sativa (japonica cultivar-group) ELIP mRNA, partial sequence Length = 296 Score = 42.1 bits (21), Expect = 1.7 Identities = 48/57 (84%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 181 gcgacgagtccgagcatggcgaaacggcca-ttccagagctccgcgttggcgttcat 236 |||||||| |||||||||||||| || || ||||||||||| | || |||| |||| Sbjct: 93 gcgacgaggccgagcatggcgaaccgnccngttccagagctcggngtcggcgntcat 37
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 cctgcccggtgccgctgccg 348 |||||||||||||||||||| Sbjct: 2102216 cctgcccggtgccgctgccg 2102235
>ref|XM_476698.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1902 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 cgccatcgcgtcccagatcg 475 |||||||||||||||||||| Sbjct: 799 cgccatcgcgtcccagatcg 780
>ref|XM_506171.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1714_H10.127 mRNA Length = 1913 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 cgccatcgcgtcccagatcg 475 |||||||||||||||||||| Sbjct: 811 cgccatcgcgtcccagatcg 792
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 ctgcccggtgccgctgccga 349 |||||||||||||||||||| Sbjct: 31884 ctgcccggtgccgctgccga 31903
>emb|Z18809.1|OSELIMR O.sensibilis mRNA for early light inducible protein (partial) Length = 774 Score = 40.1 bits (20), Expect = 6.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 195 catggcgaaacggccattccagagctccgcgttggc 230 |||||||| |||||||||||| ||||||| ||||| Sbjct: 650 catggcgaggcggccattccagcgctccgccttggc 615
>dbj|AK098844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B24, full insert sequence Length = 1902 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 cgccatcgcgtcccagatcg 475 |||||||||||||||||||| Sbjct: 799 cgccatcgcgtcccagatcg 780
>dbj|AK065047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I08, full insert sequence Length = 1915 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 cgccatcgcgtcccagatcg 475 |||||||||||||||||||| Sbjct: 811 cgccatcgcgtcccagatcg 792
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 cgccatcgcgtcccagatcg 475 |||||||||||||||||||| Sbjct: 100979 cgccatcgcgtcccagatcg 100960 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,646,743 Number of Sequences: 3902068 Number of extensions: 2646743 Number of successful extensions: 59849 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59481 Number of HSP's gapped (non-prelim): 356 length of query: 502 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 480 effective length of database: 17,147,199,772 effective search space: 8230655890560 effective search space used: 8230655890560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
