ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4p06 |
|---|---|
| Clone Library Name | barley_pub |
>FLGE_AQUAE (O67711) Flagellar hook protein flgE| Length = 482 Score = 31.2 bits (69), Expect = 0.73 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 156 PYELYITQTGHTGWLVMFLAEPSQSYVHVD 245 P ++Y +TG W V FLA + Y++VD Sbjct: 214 PADIYFVKTGTNQWKVYFLASLKERYINVD 243
>Y456_MYCPN (P75327) Lipoprotein MG321 homolog precursor (H08_orf1005)| Length = 1005 Score = 31.2 bits (69), Expect = 0.73 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 39 WXDNNGRPKVYALQTDKQSHAKSFYRELPAYVVS 140 W DNNG+P A D + +K F R AY++S Sbjct: 185 WVDNNGKPVKDASGNDVKLSSKDFERGFEAYILS 218
>FZD2_HUMAN (Q14332) Frizzled 2 precursor (Frizzled-2) (Fz-2) (hFz2) (FzE2)| Length = 565 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLP 259 G S+ +P T+ I +Y R HW V KS+ PC + + P Sbjct: 463 GVFSVLYTVPATIVIACYFYEQAFREHWERSWVSQHCKSLAIPCPAHYTP 512
>FZD7_HUMAN (O75084) Frizzled 7 precursor (Frizzled-7) (Fz-7) (hFz7) (FzE3)| Length = 574 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLPP 262 G S+ +P T+ + +Y R HW + KS PC H PP Sbjct: 472 GVFSVLYTVPATIVLACYFYEQAFREHWERTWLLQTCKSYAVPCPPGHFPP 522
>FZD2_RAT (Q08464) Frizzled 2 precursor (Frizzled-2) (Fz-2) (rFz2)| Length = 570 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLP 259 G S+ +P T+ I +Y R HW V KS+ PC + + P Sbjct: 468 GVFSVLYTVPATIVIACYFYEQAFREHWERSWVSQHCKSLAIPCPAHYTP 517
>FZD2_MOUSE (Q9JIP6) Frizzled 2 precursor (Frizzled-2) (Fz-2) (mFz2) (mFz10)| Length = 570 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLP 259 G S+ +P T+ I +Y R HW V KS+ PC + + P Sbjct: 468 GVFSVLYTVPATIVIACYFYEQAFREHWERSWVSQHCKSLAIPCPAHYTP 517
>FZD2_CHICK (Q9IA06) Frizzled 2 (Frizzled-2) (Fz-2) (cFz-2) (Fragment)| Length = 523 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLPPR 265 G S+ +P T+ I +Y R HW + KS+ PC H PR Sbjct: 421 GVFSVLYTVPATIVIACYFYEQAFRQHWERSWISQHCKSLAIPC-PLHFTPR 471
>FZD2_XENLA (Q9PUU6) Frizzled 2 precursor (Frizzled-2) (Fz-2) (Xfz2)| Length = 551 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLP 259 G S+ +P T+ I +Y R HW V KS+ PC + P Sbjct: 449 GVFSVLYTVPATIVIACYFYEQAFREHWERSWVSQNCKSLAIPCPLQYTP 498
>Y498_BUCBP (Q89A47) Hypothetical protein bbp_498| Length = 374 Score = 29.3 bits (64), Expect = 2.8 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 5/44 (11%) Frame = -3 Query: 176 CNIQLVWRQFPVGNYVCWQ-----FPVETFSVTLFVCLESIHFW 60 CN+ ++W+ F G + + + + ++S T + CL ++++W Sbjct: 209 CNLNIIWKIFLQGEKLLKKSGYKKYEISSYSKTNYQCLHNLNYW 252
>PGMP_ARATH (Q9SCY0) Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)| (Glucose phosphomutase) (PGM) Length = 623 Score = 28.9 bits (63), Expect = 3.6 Identities = 9/30 (30%), Positives = 20/30 (66%) Frame = +1 Query: 31 YKHGTIITGGQKCMLSKQTNKVTLKVSTGN 120 YK+ T++ GG +K+ +++ +K++ GN Sbjct: 116 YKNATLVLGGDGRYFNKEASQIIIKIAAGN 145
>PRP46_YARLI (Q6C709) Pre-mRNA-splicing factor PRP46 (Pre-mRNA-processing| protein 46) Length = 472 Score = 28.5 bits (62), Expect = 4.7 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +3 Query: 153 SPYELYITQTGHTGWLVMFLAEPSQSY 233 +P+E+Y TGH GW+ EP + Sbjct: 151 APWEIYRVITGHQGWVRSVCVEPENQW 177
>FZD1_XENLA (Q9I9M5) Frizzled 1 precursor (Frizzled-1) (Fz-1) (Xfz1)| Length = 559 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLPP 262 G S+ +P T+ I +Y R W + K+ PC ST PP Sbjct: 457 GIFSVLYTVPATIVIACYFYEQAFREQWEKSWISQSCKTYAIPCPSTGHPP 507
>PGMP_BRANA (Q9SMM0) Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)| (Glucose phosphomutase) (PGM) Length = 629 Score = 28.1 bits (61), Expect = 6.2 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = +1 Query: 31 YKHGTIITGGQKCMLSKQTNKVTLKVSTGN 120 YK T++ GG +K+ +++ +K++ GN Sbjct: 122 YKDATLVLGGDGRYFNKEASQIIIKIAAGN 151
>AMT3_CAEEL (Q21565) Putative ammonium transporter 3| Length = 687 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/51 (27%), Positives = 23/51 (45%) Frame = -3 Query: 191 SVTCLCNIQLVWRQFPVGNYVCWQFPVETFSVTLFVCLESIHFWPPVIIVP 39 S+T +C + W +G+ FS+ + L+ +H PV IVP Sbjct: 312 SITAICAVSRPWHALVIGSIS------SVFSIAVLPLLDRLHIDDPVGIVP 356
>RGYR2_AQUAE (O67226) Reverse gyrase 2 [Includes: Helicase (EC 3.6.1.-);| Topoisomerase (EC 5.99.1.3)] Length = 1159 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 84 DKQSHAKSFYRELPAYVVSYRELSPYELY 170 DK K FYR+ VSY + P ELY Sbjct: 324 DKVQEVKEFYRKHGINAVSYLDYKPEELY 352
>PGMP_PEA (Q9SM59) Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)| (Glucose phosphomutase) (PGM) Length = 626 Score = 27.7 bits (60), Expect = 8.1 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = +1 Query: 31 YKHGTIITGGQKCMLSKQTNKVTLKVSTGN 120 YK+G ++ GG +K+ ++ +K++ GN Sbjct: 119 YKNGLLVLGGDGRYFNKEAAQIIIKIAAGN 148 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,771,877 Number of Sequences: 219361 Number of extensions: 672136 Number of successful extensions: 1741 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1703 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1741 length of database: 80,573,946 effective HSP length: 63 effective length of database: 66,754,203 effective search space used: 1602100872 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
