Clone Name | rbaak4p06 |
---|---|
Clone Library Name | barley_pub |
>gb|BC004909.1| Homo sapiens aldehyde dehydrogenase 6 family, member A1, mRNA (cDNA clone MGC:4657 IMAGE:3530715), complete cds Length = 1854 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 103 aaagtttctacagggaactgcc 124 |||||||||||||||||||||| Sbjct: 1784 aaagtttctacagggaactgcc 1805
>ref|XM_821979.1| Trypanosoma brucei TREU927 hypothetical protein (Tb09.160.5230) partial mRNA Length = 618 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 237 catgtcgatcaacgcatcttcc 258 |||||||||||||||||||||| Sbjct: 216 catgtcgatcaacgcatcttcc 195
>gb|AF130089.1|AF130089 Homo sapiens clone FLB9440 PRO2550 mRNA, complete cds Length = 2144 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 103 aaagtttctacagggaactgcc 124 |||||||||||||||||||||| Sbjct: 1450 aaagtttctacagggaactgcc 1429
>emb|AL844608.18| Mouse DNA sequence from clone RP23-27L22 on chromosome 2, complete sequence Length = 207035 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Plus Query: 74 tctccaaacagacaaacaaagtcac 98 |||||||||| |||||||||||||| Sbjct: 201622 tctccaaacaaacaaacaaagtcac 201646
>dbj|AP003043.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-617B3, complete sequence Length = 180648 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 ctctccaaacagacaaacaaa 93 ||||||||||||||||||||| Sbjct: 145184 ctctccaaacagacaaacaaa 145204
>gb|AC158308.4| Mus musculus chromosome 3, clone RP23-182M12, complete sequence Length = 176856 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ctctccaaacagacaaacaa 92 |||||||||||||||||||| Sbjct: 121878 ctctccaaacagacaaacaa 121897
>ref|XM_924200.2| PREDICTED: Mus musculus alpha-kinase 1, transcript variant 6 (Alpk1), mRNA Length = 6505 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ctctccaaacagacaaacaa 92 |||||||||||||||||||| Sbjct: 6322 ctctccaaacagacaaacaa 6303
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 catgtcgatcaacgcatcttcctc 260 |||||||||| ||||||||||||| Sbjct: 1987228 catgtcgatcgacgcatcttcctc 1987251
>gb|AC102600.11| Mus musculus chromosome 3, clone RP23-376E16, complete sequence Length = 131703 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ctctccaaacagacaaacaa 92 |||||||||||||||||||| Sbjct: 79231 ctctccaaacagacaaacaa 79212
>dbj|AK173191.1| Mus musculus mRNA for mKIAA1527 protein Length = 6402 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ctctccaaacagacaaacaa 92 |||||||||||||||||||| Sbjct: 6308 ctctccaaacagacaaacaa 6289
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 gtcacactggttggttggtcatgt 207 ||||||||||||||||| |||||| Sbjct: 906541 gtcacactggttggttgctcatgt 906518
>gb|M63149.1|TOVM1P Ustilago maydis virus P1 (M1) gene, complete cds Length = 1504 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tcacgctaaaagtttctaca 114 |||||||||||||||||||| Sbjct: 187 tcacgctaaaagtttctaca 168 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,005,454 Number of Sequences: 3902068 Number of extensions: 2005454 Number of successful extensions: 36640 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36620 Number of HSP's gapped (non-prelim): 20 length of query: 265 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 243 effective length of database: 17,147,199,772 effective search space: 4166769544596 effective search space used: 4166769544596 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)