ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4p06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC004909.1| Homo sapiens aldehyde dehydrogenase 6 family, mem... 44 0.22
2ref|XM_821979.1| Trypanosoma brucei TREU927 hypothetical protein... 44 0.22
3gb|AF130089.1|AF130089 Homo sapiens clone FLB9440 PRO2550 mRNA, ... 44 0.22
4emb|AL844608.18| Mouse DNA sequence from clone RP23-27L22 on chr... 42 0.87
5dbj|AP003043.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 0.87
6gb|AC158308.4| Mus musculus chromosome 3, clone RP23-182M12, com... 40 3.4
7ref|XM_924200.2| PREDICTED: Mus musculus alpha-kinase 1, transcr... 40 3.4
8gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 3.4
9gb|AC102600.11| Mus musculus chromosome 3, clone RP23-376E16, co... 40 3.4
10dbj|AK173191.1| Mus musculus mRNA for mKIAA1527 protein 40 3.4
11emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 3.4
12gb|M63149.1|TOVM1P Ustilago maydis virus P1 (M1) gene, complete cds 40 3.4

>gb|BC004909.1| Homo sapiens aldehyde dehydrogenase 6 family, member A1, mRNA (cDNA
            clone MGC:4657 IMAGE:3530715), complete cds
          Length = 1854

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 103  aaagtttctacagggaactgcc 124
            ||||||||||||||||||||||
Sbjct: 1784 aaagtttctacagggaactgcc 1805



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>ref|XM_821979.1| Trypanosoma brucei TREU927 hypothetical protein (Tb09.160.5230)
           partial mRNA
          Length = 618

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 237 catgtcgatcaacgcatcttcc 258
           ||||||||||||||||||||||
Sbjct: 216 catgtcgatcaacgcatcttcc 195



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>gb|AF130089.1|AF130089 Homo sapiens clone FLB9440 PRO2550 mRNA, complete cds
          Length = 2144

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 103  aaagtttctacagggaactgcc 124
            ||||||||||||||||||||||
Sbjct: 1450 aaagtttctacagggaactgcc 1429



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>emb|AL844608.18| Mouse DNA sequence from clone RP23-27L22 on chromosome 2, complete
              sequence
          Length = 207035

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 74     tctccaaacagacaaacaaagtcac 98
              |||||||||| ||||||||||||||
Sbjct: 201622 tctccaaacaaacaaacaaagtcac 201646



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>dbj|AP003043.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-617B3, complete
              sequence
          Length = 180648

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 73     ctctccaaacagacaaacaaa 93
              |||||||||||||||||||||
Sbjct: 145184 ctctccaaacagacaaacaaa 145204



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>gb|AC158308.4| Mus musculus chromosome 3, clone RP23-182M12, complete sequence
          Length = 176856

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     ctctccaaacagacaaacaa 92
              ||||||||||||||||||||
Sbjct: 121878 ctctccaaacagacaaacaa 121897



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>ref|XM_924200.2| PREDICTED: Mus musculus alpha-kinase 1, transcript variant 6 (Alpk1),
            mRNA
          Length = 6505

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 73   ctctccaaacagacaaacaa 92
            ||||||||||||||||||||
Sbjct: 6322 ctctccaaacagacaaacaa 6303



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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 237     catgtcgatcaacgcatcttcctc 260
               |||||||||| |||||||||||||
Sbjct: 1987228 catgtcgatcgacgcatcttcctc 1987251



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>gb|AC102600.11| Mus musculus chromosome 3, clone RP23-376E16, complete sequence
          Length = 131703

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    ctctccaaacagacaaacaa 92
             ||||||||||||||||||||
Sbjct: 79231 ctctccaaacagacaaacaa 79212



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>dbj|AK173191.1| Mus musculus mRNA for mKIAA1527 protein
          Length = 6402

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 73   ctctccaaacagacaaacaa 92
            ||||||||||||||||||||
Sbjct: 6308 ctctccaaacagacaaacaa 6289



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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 184    gtcacactggttggttggtcatgt 207
              ||||||||||||||||| ||||||
Sbjct: 906541 gtcacactggttggttgctcatgt 906518



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>gb|M63149.1|TOVM1P Ustilago maydis virus P1 (M1) gene, complete cds
          Length = 1504

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 95  tcacgctaaaagtttctaca 114
           ||||||||||||||||||||
Sbjct: 187 tcacgctaaaagtttctaca 168


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,005,454
Number of Sequences: 3902068
Number of extensions: 2005454
Number of successful extensions: 36640
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36620
Number of HSP's gapped (non-prelim): 20
length of query: 265
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 243
effective length of database: 17,147,199,772
effective search space: 4166769544596
effective search space used: 4166769544596
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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