ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaak4p05 |
|---|---|
| Clone Library Name | barley_pub |
>CR14_HORVU (P26154) Cold-regulated protein BLT14| Length = 88 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 1/31 (3%) Frame = -3 Query: 232 NRYRYQYH*RPAGGDSWGP-YSCMIILCACA 143 NRYR ++H RPAGGD W P Y MII +CA Sbjct: 53 NRYRNKHHYRPAGGDPWDPCYRPMIISTSCA 83
>CR2_HORVU (P23252) Cold-regulated protein 2 (Fragment)| Length = 202 Score = 36.6 bits (83), Expect = 0.016 Identities = 17/25 (68%), Positives = 17/25 (68%) Frame = -3 Query: 232 NRYRYQYH*RPAGGDSWGPYSCMII 158 N Y YQYH RP GG S GP S MII Sbjct: 168 NHYGYQYHYRPGGGASGGPCSPMII 192
>KLHL4_HUMAN (Q9C0H6) Kelch-like protein 4| Length = 718 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -1 Query: 228 GTGTSTINGPLVVIPGVPTHA*SSCVHVLTCIHTYKLKLNLW 103 G G +T NG L V+ G A + C + C+ Y K + W Sbjct: 609 GVGVATYNGFLYVVGGHDAPASNHCSRLSDCVERYDPKGDSW 650
>PHXR5_MOUSE (P08399) Per-hexamer repeat protein 5| Length = 672 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 211 GTGTGTGSHHRQVRQPRTRRSLGLGDAT-SGAGT 309 GTGTGTG+ +V T R G G T +G GT Sbjct: 256 GTGTGTGTGTAKVTGTGTDRGTGTGTGTGTGTGT 289 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +1 Query: 211 GTGTGTGSHHRQVRQPRTRRSLGLGDAT-SGAGT 309 GTGTGTG+ +V T R G G T +G GT Sbjct: 154 GTGTGTGTGTAKVTGTGTDRGTGTGTGTGTGTGT 187
>Y032_TREPA (O83075) Hypothetical UPF0088 protein TP0032| Length = 266 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 75 DAGYRNLVKPTSSASACMYVCKSAHAHKMIMHE*GPQESP 194 D G R L T++ +AC V +AHA K + G + SP Sbjct: 221 DMGRRTLRTETAACAACAVVLANAHAWKRKIPRPGKRSSP 260
>NHR47_CAEEL (Q17370) Nuclear hormone receptor family member nhr-47| Length = 579 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 Query: 163 IILCACADLHTYIQAEAELVGFTRFL*PAS 74 ++L CADLH+Y E L +RF+ P S Sbjct: 158 LLLSRCADLHSYATLEDALNAPSRFMQPIS 187
>LIX1L_HUMAN (Q8IVB5) LIX1-like protein| Length = 337 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/43 (32%), Positives = 16/43 (37%) Frame = +2 Query: 182 PGITTSGXXXXXXXXXXXTTGKSGNPEPEEALDSATPPPAPAP 310 PG+ TSG T + P A PPPAP P Sbjct: 11 PGVGTSGRGTLRALRPGVTGAAAATATPPAGPPPAPPPPAPPP 53
>GLE_CHLRE (P31178) Autolysin precursor (EC 3.4.24.38) (Gametolysin) (Gamete| lytic enzyme) (GLE) Length = 638 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Frame = +3 Query: 9 KRIQTLIEERGHERNAGVFLPGD----AGYRNLVKPTSSASACMYVCKSAHAHKMIMHE 173 K++Q +++ R RN + PG +GY ++ +++ SA + +A ++IMHE Sbjct: 339 KKLQGILQWRERRRNIYILPPGVKCSWSGYADVTCTSATCSAYVRGYSDTNAMQVIMHE 397
>TAF12_YEAST (Q03761) Transcription initiation factor TFIID subunit 12| (TBP-associated factor 12) (TBP-associated factor 61 kDa) (TAFII-61) (TAFII61) (TAFII-68) (TAFII68) Length = 539 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 5/36 (13%) Frame = +1 Query: 169 MSRDPRNHHQRAVNGTGTG-----TGSHHRQVRQPR 261 MS +P N A N TGTG TG+ V QPR Sbjct: 1 MSSNPENSGVNANNNTGTGNADAITGAQQNMVLQPR 36
>LATS1_MOUSE (Q8BYR2) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large| tumor suppressor homolog 1) (WARTS protein kinase) Length = 1129 Score = 27.7 bits (60), Expect = 7.6 Identities = 16/49 (32%), Positives = 20/49 (40%) Frame = +2 Query: 158 DDHA*VGTPGITTSGXXXXXXXXXXXTTGKSGNPEPEEALDSATPPPAP 304 + A VG P SG + G+ NP P + S TPPP P Sbjct: 206 NSQADVGRP---LSGSGIAAFAQAHPSNGQRVNPPPPPQVRSVTPPPPP 251
>FIN15_MOUSE (Q61075) Fibroblast growth factor-inducible protein 15 (FIN15)| Length = 87 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -3 Query: 175 YSCMIILCACADLHTYIQAEAELVGFTRF 89 Y+C + C C D+HT+ + EL +T F Sbjct: 20 YTCSFV-CVCMDIHTHTVLQNELFMYTYF 47
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 242 GKSGNPEPEEALDSATPPPAPAP 310 G G P P A A+P P+PAP Sbjct: 89 GSGGPPTPAAAAQPASPAPSPAP 111
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 242 GKSGNPEPEEALDSATPPPAPAP 310 G G P P A A+P P+PAP Sbjct: 89 GSGGPPTPAAAAQPASPAPSPAP 111
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 242 GKSGNPEPEEALDSATPPPAPAP 310 G G P P A A+P P+PAP Sbjct: 89 GSGGPPTPAAAAQPASPAPSPAP 111
>FLO_ANTMA (P23915) Floricaula protein| Length = 396 Score = 27.3 bits (59), Expect = 10.0 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +2 Query: 257 PEPEEALDSATPPPAPAP 310 P+P LD+ PPP P P Sbjct: 17 PQPNRLLDAVAPPPPPPP 34
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +1 Query: 193 HQRAVNGTGTGTGSHHRQVRQPRTRRSLGLGDATS 297 H++A + G GSHH+Q +G G A+S Sbjct: 3615 HEQARSSAGERHGSHHQQSADSSRHSGIGHGQASS 3649 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +1 Query: 193 HQRAVNGTGTGTGSHHRQVRQPRTRRSLGLGDATS 297 H++A + G GSHH+Q +G G A+S Sbjct: 2967 HEQARSSAGERHGSHHQQSADSSRHSGIGHGQASS 3001 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +1 Query: 193 HQRAVNGTGTGTGSHHRQVRQPRTRRSLGLGDATS 297 H++A + G GSHH+Q +G G A+S Sbjct: 2643 HEQARSSAGERHGSHHQQSADSSRHSGIGHGQASS 2677 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +1 Query: 193 HQRAVNGTGTGTGSHHRQVRQPRTRRSLGLGDATS 297 H++A + G GSHH+Q +G G A+S Sbjct: 2319 HEQARSSAGERHGSHHQQSADSSRHSGIGHGQASS 2353
>SOPE2_SALPA (Q5PHN0) Guanine nucleotide exchange factor sopE2 (Effector protein| sopE2) (Toxin sopE2) Length = 239 Score = 27.3 bits (59), Expect = 10.0 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 10/52 (19%) Frame = +3 Query: 57 GVFLPGDAGYRNLVKPTSSASACMY----------VCKSAHAHKMIMHE*GP 182 GVF PG AG V P +A++ Y V A+A K++M E P Sbjct: 159 GVFTPGGAGANPFVVPLIAAASIKYPHMFINHNQQVSFKAYAEKIVMKEVTP 210
>ILRL2_RAT (Q62929) Interleukin-1 receptor-like 2 precursor (Interleukin-1| receptor-related protein 2) (IL1R-rp2) Length = 561 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/42 (28%), Positives = 24/42 (57%) Frame = -1 Query: 153 VHVLTCIHTYKLKLNLWVLLDFYSRHRPEEKHLRFAHVHVPQ 28 V +L +T+K+ + LW F++ P+++ L A+V P+ Sbjct: 353 VSILYIYNTFKVDIVLWYRSTFHTAQAPDDEKLYDAYVLYPK 394
>RW1_DROME (Q9V7H4) RW1 protein homolog| Length = 1567 Score = 27.3 bits (59), Expect = 10.0 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +1 Query: 175 RDPRNHHQRAVNGTGTGTGSHHRQVRQPRTRRSLGLGDATS 297 R+ R+ Q+ NGTG G G + +Q R+ L G T+ Sbjct: 1290 RERRSKDQKLTNGTGAGVGFRKPERKQ---RQKLNFGQTTN 1327 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,260,761 Number of Sequences: 219361 Number of extensions: 911631 Number of successful extensions: 3660 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3154 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3622 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
