Clone Information

BLAST Search Result

Clone Name	rbaak4o23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_188414.1\| Oryza sativa (japonica cultivar-group), Ozsa814...	404	e-109
2	dbj\|AK066468.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	404	e-109
3	gb\|AY108872.1\| Zea mays PCO108167 mRNA sequence	367	3e-98
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	250	5e-63
5	dbj\|AP002092.1\| Oryza sativa (japonica cultivar-group) genomic D...	250	5e-63
6	ref\|XM_464813.1\| Oryza sativa (japonica cultivar-group), mRNA	105	2e-19
7	dbj\|AP003104.2\| Oryza sativa (japonica cultivar-group) genomic D...	72	2e-09
8	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	68	4e-08
9	dbj\|AP005511.3\| Oryza sativa (japonica cultivar-group) genomic D...	68	4e-08
10	dbj\|AP005614.2\| Oryza sativa (japonica cultivar-group) genomic D...	68	4e-08
11	ref\|XM_363303.1\| Magnaporthe grisea 70-15 hypothetical protein (...	48	0.034
12	gb\|AC166937.2\| Mus musculus BAC clone RP24-121A12 from chromosom...	48	0.034
13	dbj\|AK220271.1\| Mus musculus premature mRNA for mKIAA1814 protein	48	0.034
14	gb\|AC152413.5\| Mus musculus BAC clone RP23-431A21 from chromosom...	48	0.034
15	emb\|BX088594.5\| Zebrafish DNA sequence from clone RP71-1G17 in l...	44	0.54
16	gb\|AC005368.1\| Homo sapiens chromosome 5, BAC clone 194j18 (LBNL...	42	2.1
17	gb\|AC008781.7\| Homo sapiens chromosome 5 clone CTD-2024I7, compl...	42	2.1
18	ref\|NM_122383.2\| Arabidopsis thaliana unknown protein AT5G24740 ...	40	8.4
19	ref\|XM_483110.1\| Oryza sativa (japonica cultivar-group), mRNA	40	8.4
20	gb\|AC104192.11\| Mus musculus chromosome 5, clone RP24-439L10, co...	40	8.4
21	gb\|BC081611.1\| Danio rerio zgc:92159, mRNA (cDNA clone MGC:92159...	40	8.4
22	gb\|U41553.1\| Caenorhabditis elegans cosmid ZK1193, complete sequ...	40	8.4
23	emb\|AL139041.17\| Human DNA sequence from clone RP11-408O19 on ch...	40	8.4
24	emb\|AL392145.1\|ATT4C12 Arabidopsis thaliana DNA chromosome 5, BA...	40	8.4
25	ref\|NM_001004590.1\| Danio rerio zgc:92159 (zgc:92159), mRNA	40	8.4
26	gb\|AY119124.1\| Drosophila melanogaster RE27864 full insert cDNA	40	8.4
27	ref\|NM_206141.1\| Drosophila melanogaster CG33456-PA (CG33456) mR...	40	8.4
28	gb\|AC025538.6\| Homo sapiens BAC clone RP11-274J2 from 4, complet...	40	8.4
29	dbj\|AK169827.1\| Mus musculus 2 days neonate thymus thymic cells ...	40	8.4
30	gb\|AC099030.1\| Drosophila melanogaster, chromosome 2R, region 53...	40	8.4
31	gb\|AC118231.9\| Mus musculus chromosome 5, clone RP23-462J24, com...	40	8.4
32	emb\|BX248230.21\| Zebrafish DNA sequence from clone CH211-213O11 ...	40	8.4
33	dbj\|AK084473.1\| Mus musculus 13 days embryo heart cDNA, RIKEN fu...	40	8.4
34	gb\|BC096689.1\| Mus musculus cDNA clone IMAGE:3825518	40	8.4
35	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
36	gb\|BC030470.1\| Mus musculus, Similar to ring finger protein 4, c...	40	8.4
37	dbj\|AB013392.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	40	8.4
38	dbj\|AP004762.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
39	gb\|AC154822.2\| Mus musculus BAC clone RP24-537L18 from 13, compl...	40	8.4
40	dbj\|AK065316.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.4
41	gb\|AF030104.1\|MMCLCNVI4 Mus musculus putative chloride channel p...	40	8.4
42	gb\|AE003805.3\| Drosophila melanogaster chromosome 2R, section 45...	40	8.4
43	gb\|AC004641.1\|AC004641 Drosophila melanogaster DNA sequence (P1s...	40	8.4
44	emb\|AL662809.14\| Mouse DNA sequence from clone RP23-441I8 on chr...	40	8.4
45	emb\|CT009718.13\| Mouse DNA sequence from clone RP23-95L9 on chro...	40	8.4
46	dbj\|D83997.1\| Capparis masaikai mRNA for mabinlin, complete cds	40	8.4

>ref|NM_188414.1| Oryza sativa (japonica cultivar-group), Ozsa8140 predicted mRNA
          Length = 2007

 Score =  404 bits (204), Expect = e-109
 Identities = 423/496 (85%)
 Strand = Plus / Minus

                                                                        
Query: 120  tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 179
            |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 2006 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 1947

                                                                        
Query: 180  aggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaagaggccc 239
            | ||||||||||||||||||||||||||||||  |||| | ||||||||||||||| |||
Sbjct: 1946 atgtacgccaccagacaggtccagagcgggaatgtggttctgaagcttgtgaagagtccc 1887

                                                                        
Query: 240  atgatgacacaggcgagcaggatgacgagcacctccgaagagaagtcccacgtcagctcc 299
            |||||||||||| ||||||| |||| |||||||||||| ||||||||||| ||||| | |
Sbjct: 1886 atgatgacacagacgagcagtatgatgagcacctccgatgagaagtcccatgtcaggttc 1827

                                                                        
Query: 300  ctgaagtagatgagcgccaagaacacgcccagacacagcgtgttgttcatggtcacgcca 359
            |||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||
Sbjct: 1826 ctgatgtagatgagcgccaagaacacgcccaagcacagcgtgttgttcatggtcacacca 1767

                                                                        
Query: 360  ccgtatacctctgagaaagtgagggagcaagtcctctgcttcttcctgctggcgaagatg 419
            || |||||||| |||||||| ||||| |  ||||   ||||||||||||| |||||||||
Sbjct: 1766 ccatatacctcagagaaagtaagggaactggtccgtagcttcttcctgctagcgaagatg 1707

                                                                        
Query: 420  atggctgagacagcctcgctggaattggttgccagaggcaggccgatgaacgagacaaag 479
            ||||| || |||||||||||||| ||||| ||||| || ||| |||||||||| |  |||
Sbjct: 1706 atggcagacacagcctcgctggagttggtcgccagcgggagggcgatgaacgaaatgaag 1647

                                                                        
Query: 480  aaggacgggatgtgtgtggcattagaaaagttgtggacagcatcaacgagcgggtctgca 539
            ||||| |||||||| | ||| || || |||||||||||||||||||| ||||||||||| 
Sbjct: 1646 aaggatgggatgtgcgaggcgttggagaagttgtggacagcatcaacaagcgggtctgcg 1587

                                                                        
Query: 540  aatgcggcacaaatggtagcaccgagaagcaggtaccccacagctttggcaatacaccag 599
            ||||| |||  ||||| |   ||||||||||||   ||||| |||||||  || ||||||
Sbjct: 1586 aatgcagcagcaatggcactgccgagaagcaggagtcccacggctttggtgatgcaccag 1527

                            
Query: 600  ccagggttctcgacgc 615
            ||||||||||| ||||
Sbjct: 1526 ccagggttctcaacgc 1511

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>dbj|AK066468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066B01, full
            insert sequence
          Length = 2023

 Score =  404 bits (204), Expect = e-109
 Identities = 423/496 (85%)
 Strand = Plus / Minus

                                                                        
Query: 120  tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 179
            |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 1791 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 1732

                                                                        
Query: 180  aggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaagaggccc 239
            | ||||||||||||||||||||||||||||||  |||| | ||||||||||||||| |||
Sbjct: 1731 atgtacgccaccagacaggtccagagcgggaatgtggttctgaagcttgtgaagagtccc 1672

                                                                        
Query: 240  atgatgacacaggcgagcaggatgacgagcacctccgaagagaagtcccacgtcagctcc 299
            |||||||||||| ||||||| |||| |||||||||||| ||||||||||| ||||| | |
Sbjct: 1671 atgatgacacagacgagcagtatgatgagcacctccgatgagaagtcccatgtcaggttc 1612

                                                                        
Query: 300  ctgaagtagatgagcgccaagaacacgcccagacacagcgtgttgttcatggtcacgcca 359
            |||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||
Sbjct: 1611 ctgatgtagatgagcgccaagaacacgcccaagcacagcgtgttgttcatggtcacacca 1552

                                                                        
Query: 360  ccgtatacctctgagaaagtgagggagcaagtcctctgcttcttcctgctggcgaagatg 419
            || |||||||| |||||||| ||||| |  ||||   ||||||||||||| |||||||||
Sbjct: 1551 ccatatacctcagagaaagtaagggaactggtccgtagcttcttcctgctagcgaagatg 1492

                                                                        
Query: 420  atggctgagacagcctcgctggaattggttgccagaggcaggccgatgaacgagacaaag 479
            ||||| || |||||||||||||| ||||| ||||| || ||| |||||||||| |  |||
Sbjct: 1491 atggcagacacagcctcgctggagttggtcgccagcgggagggcgatgaacgaaatgaag 1432

                                                                        
Query: 480  aaggacgggatgtgtgtggcattagaaaagttgtggacagcatcaacgagcgggtctgca 539
            ||||| |||||||| | ||| || || |||||||||||||||||||| ||||||||||| 
Sbjct: 1431 aaggatgggatgtgcgaggcgttggagaagttgtggacagcatcaacaagcgggtctgcg 1372

                                                                        
Query: 540  aatgcggcacaaatggtagcaccgagaagcaggtaccccacagctttggcaatacaccag 599
            ||||| |||  ||||| |   ||||||||||||   ||||| |||||||  || ||||||
Sbjct: 1371 aatgcagcagcaatggcactgccgagaagcaggagtcccacggctttggtgatgcaccag 1312

                            
Query: 600  ccagggttctcgacgc 615
            ||||||||||| ||||
Sbjct: 1311 ccagggttctcaacgc 1296

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>gb|AY108872.1| Zea mays PCO108167 mRNA sequence
          Length = 805

 Score =  367 bits (185), Expect = 3e-98
 Identities = 362/421 (85%)
 Strand = Plus / Minus

                                                                       
Query: 115 gagcctatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggt 174
           ||||||||||||| || |||||| ||||||||| ||| |||| | |||| |  |  ||||
Sbjct: 565 gagcctatgaccagccaaagacgtagtcgaggatgtagacgaggaccagcgagaacgggt 506

                                                                       
Query: 175 acagcaggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaaga 234
           | |||| ||| || || || |||||||||||||||||  ||||||||||||| |||||||
Sbjct: 505 agagcatgtaggcgacgaggcaggtccagagcgggaacgtggtccggaagctggtgaaga 446

                                                                       
Query: 235 ggcccatgatgacacaggcgagcaggatgacgagcacctccgaagagaagtcccacgtca 294
           || |||||| ||| ||| |||||||||||| |||||||||||| ||||||||||| ||||
Sbjct: 445 gggccatgacgacgcagacgagcaggatgatgagcacctccgacgagaagtcccatgtca 386

                                                                       
Query: 295 gctccctgaagtagatgagcgccaagaacacgcccagacacagcgtgttgttcatggtca 354
           | | |||||||||||||||||||| ||||||||| || ||||||||||||||||| ||||
Sbjct: 385 ggttcctgaagtagatgagcgccaggaacacgccgaggcacagcgtgttgttcatcgtca 326

                                                                       
Query: 355 cgccaccgtatacctctgagaaagtgagggagcaagtcctctgcttcttcctgctggcga 414
           |||| || || ||||| ||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct: 325 cgccgccatacacctcggagaatgtgagggagcaggtccgctgcttcttcctgctggcga 266

                                                                       
Query: 415 agatgatggctgagacagcctcgctggaattggttgccagaggcaggccgatgaacgaga 474
           |||||||||| ||||| ||||||||||| ||||| || || || ||| ||||||| ||||
Sbjct: 265 agatgatggcggagacggcctcgctggagttggtcgcgagcggaagggcgatgaaggaga 206

                                                                       
Query: 475 caaagaaggacgggatgtgtgtggcattagaaaagttgtggacagcatcaacgagcgggt 534
             ||||||||||||||||| ||||| || || ||||||||||| || || ||||||||||
Sbjct: 205 tgaagaaggacgggatgtgcgtggcgttggagaagttgtggacggcgtccacgagcgggt 146

            
Query: 535 c 535
           |
Sbjct: 145 c 145

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  250 bits (126), Expect = 5e-63
 Identities = 219/250 (87%)
 Strand = Plus / Minus

                                                                           
Query: 120     tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 179
               |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 6137904 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 6137845

                                                                           
Query: 180     aggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaagaggccc 239
               | ||||||||||||||||||||||||||||||  |||| | ||||||||||||||| |||
Sbjct: 6137844 atgtacgccaccagacaggtccagagcgggaatgtggttctgaagcttgtgaagagtccc 6137785

                                                                           
Query: 240     atgatgacacaggcgagcaggatgacgagcacctccgaagagaagtcccacgtcagctcc 299
               |||||||||||| ||||||| |||| |||||||||||| ||||||||||| ||||| | |
Sbjct: 6137784 atgatgacacagacgagcagtatgatgagcacctccgatgagaagtcccatgtcaggttc 6137725

                                                                           
Query: 300     ctgaagtagatgagcgccaagaacacgcccagacacagcgtgttgttcatggtcacgcca 359
               |||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||
Sbjct: 6137724 ctgatgtagatgagcgccaagaacacgcccaagcacagcgtgttgttcatggtcacacca 6137665

                         
Query: 360     ccgtatacct 369
               || |||||||
Sbjct: 6137664 ccatatacct 6137655



 Score =  165 bits (83), Expect = 2e-37
 Identities = 185/219 (84%)
 Strand = Plus / Minus

                                                                           
Query: 397     gcttcttcctgctggcgaagatgatggctgagacagcctcgctggaattggttgccagag 456
               ||||||||||||| |||||||||||||| || |||||||||||||| ||||| ||||| |
Sbjct: 6137529 gcttcttcctgctagcgaagatgatggcagacacagcctcgctggagttggtcgccagcg 6137470

                                                                           
Query: 457     gcaggccgatgaacgagacaaagaaggacgggatgtgtgtggcattagaaaagttgtgga 516
               | ||| |||||||||| |  |||||||| |||||||| | ||| || || ||||||||||
Sbjct: 6137469 ggagggcgatgaacgaaatgaagaaggatgggatgtgcgaggcgttggagaagttgtgga 6137410

                                                                           
Query: 517     cagcatcaacgagcgggtctgcaaatgcggcacaaatggtagcaccgagaagcaggtacc 576
               |||||||||| ||||||||||| ||||| |||  ||||| |   ||||||||||||   |
Sbjct: 6137409 cagcatcaacaagcgggtctgcgaatgcagcagcaatggcactgccgagaagcaggagtc 6137350

                                                      
Query: 577     ccacagctttggcaatacaccagccagggttctcgacgc 615
               |||| |||||||  || ||||||||||||||||| ||||
Sbjct: 6137349 ccacggctttggtgatgcaccagccagggttctcaacgc 6137311

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>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0031E09
          Length = 176349

 Score =  250 bits (126), Expect = 5e-63
 Identities = 219/250 (87%)
 Strand = Plus / Minus

                                                                          
Query: 120    tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 179
              |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 162261 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 162202

                                                                          
Query: 180    aggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaagaggccc 239
              | ||||||||||||||||||||||||||||||  |||| | ||||||||||||||| |||
Sbjct: 162201 atgtacgccaccagacaggtccagagcgggaatgtggttctgaagcttgtgaagagtccc 162142

                                                                          
Query: 240    atgatgacacaggcgagcaggatgacgagcacctccgaagagaagtcccacgtcagctcc 299
              |||||||||||| ||||||| |||| |||||||||||| ||||||||||| ||||| | |
Sbjct: 162141 atgatgacacagacgagcagtatgatgagcacctccgatgagaagtcccatgtcaggttc 162082

                                                                          
Query: 300    ctgaagtagatgagcgccaagaacacgcccagacacagcgtgttgttcatggtcacgcca 359
              |||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||
Sbjct: 162081 ctgatgtagatgagcgccaagaacacgcccaagcacagcgtgttgttcatggtcacacca 162022

                        
Query: 360    ccgtatacct 369
              || |||||||
Sbjct: 162021 ccatatacct 162012



 Score =  165 bits (83), Expect = 2e-37
 Identities = 185/219 (84%)
 Strand = Plus / Minus

                                                                          
Query: 397    gcttcttcctgctggcgaagatgatggctgagacagcctcgctggaattggttgccagag 456
              ||||||||||||| |||||||||||||| || |||||||||||||| ||||| ||||| |
Sbjct: 161886 gcttcttcctgctagcgaagatgatggcagacacagcctcgctggagttggtcgccagcg 161827

                                                                          
Query: 457    gcaggccgatgaacgagacaaagaaggacgggatgtgtgtggcattagaaaagttgtgga 516
              | ||| |||||||||| |  |||||||| |||||||| | ||| || || ||||||||||
Sbjct: 161826 ggagggcgatgaacgaaatgaagaaggatgggatgtgcgaggcgttggagaagttgtgga 161767

                                                                          
Query: 517    cagcatcaacgagcgggtctgcaaatgcggcacaaatggtagcaccgagaagcaggtacc 576
              |||||||||| ||||||||||| ||||| |||  ||||| |   ||||||||||||   |
Sbjct: 161766 cagcatcaacaagcgggtctgcgaatgcagcagcaatggcactgccgagaagcaggagtc 161707

                                                     
Query: 577    ccacagctttggcaatacaccagccagggttctcgacgc 615
              |||| |||||||  || ||||||||||||||||| ||||
Sbjct: 161706 ccacggctttggtgatgcaccagccagggttctcaacgc 161668

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>ref|XM_464813.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1716

 Score =  105 bits (53), Expect = 2e-19
 Identities = 260/329 (79%)
 Strand = Plus / Minus

                                                                        
Query: 216  gtccggaagcttgtgaagaggcccatgatgacacaggcgagcaggatgacgagcacctcc 275
            ||||||||||| |||||||||||||| ||||  ||  |||| ||||||| ||| ||||||
Sbjct: 1619 gtccggaagctggtgaagaggcccattatgatgcacacgaggaggatgatgagtacctcc 1560

                                                                        
Query: 276  gaagagaagtcccacgtcagctccctgaagtagatgagcgccaagaacacgcccagacac 335
            || ||||| ||||| || |   |||| | ||| |  || |||||||||||| | || || 
Sbjct: 1559 gatgagaaatcccaggttaagcccctcacgtaaacaagggccaagaacacggcgaggcag 1500

                                                                        
Query: 336  agcgtgttgttcatggtcacgccaccgtatacctctgagaaagtgagggagcaagtcctc 395
            || ||||||||||||||||| ||||| || ||||| ||||| || || ||  ||||||  
Sbjct: 1499 agtgtgttgttcatggtcactccaccatagacctcagagaaggttagtgacaaagtccgt 1440

                                                                        
Query: 396  tgcttcttcctgctggcgaagatgatggctgagacagcctcgctggaattggttgccaga 455
            | |||||||| ||| || || || || ||||||||||||||||||||||| || ||||  
Sbjct: 1439 ttcttcttccggctagcaaatataattgctgagacagcctcgctggaattagtagccaag 1380

                                                                        
Query: 456  ggcaggccgatgaacgagacaaagaaggacgggatgtgtgtggcattagaaaagttgtgg 515
            ||||   | ||||| ||||  || ||||| || || ||||| ||||| || || ||||| 
Sbjct: 1379 ggcattacaatgaaggagatgaaaaaggagggaatatgtgtagcatttgagaaattgtgc 1320

                                         
Query: 516  acagcatcaacgagcgggtctgcaaatgc 544
            ||||||||||| || || |||||| ||||
Sbjct: 1319 acagcatcaacaagaggatctgcagatgc 1291

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>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           BAC clone:OSJNBa0038J17
          Length = 180186

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 120 tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 179
           |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 102 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 43

                                           
Query: 180 aggtacgccaccagacaggtccagagcgggaa 211
           | ||||||||||||||||||||||||||||||
Sbjct: 42  atgtacgccaccagacaggtccagagcgggaa 11

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                           
Query: 216     gtccggaagcttgtgaagaggcccatgatgacacaggcgagcaggatgacgagcacctcc 275
               ||||||||||| |||||||||||||| ||||  ||  |||| ||||||| ||| ||||||
Sbjct: 8361416 gtccggaagctggtgaagaggcccattatgatgcacacgaggaggatgatgagtacctcc 8361357

                                                                           
Query: 276     gaagagaagtcccacgtcagctccctgaagtagatgagcgccaagaacacgcccagacac 335
               || ||||| ||||| || |   |||| | ||| |  || |||||||||||| | || || 
Sbjct: 8361356 gatgagaaatcccaggttaagcccctcacgtaaacaagggccaagaacacggcgaggcag 8361297

                                         
Query: 336     agcgtgttgttcatggtcacgccacc 361
               || ||||||||||||||||| |||||
Sbjct: 8361296 agtgtgttgttcatggtcactccacc 8361271



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 117/147 (79%)
 Strand = Plus / Minus

                                                                           
Query: 398     cttcttcctgctggcgaagatgatggctgagacagcctcgctggaattggttgccagagg 457
               |||||||| ||| || || || || ||||||||||||||||||||||| || ||||  ||
Sbjct: 8361023 cttcttccggctagcaaatataattgctgagacagcctcgctggaattagtagccaaggg 8360964

                                                                           
Query: 458     caggccgatgaacgagacaaagaaggacgggatgtgtgtggcattagaaaagttgtggac 517
               ||   | ||||| ||||  || ||||| || || ||||| ||||| || || ||||| ||
Sbjct: 8360963 cattacaatgaaggagatgaaaaaggagggaatatgtgtagcatttgagaaattgtgcac 8360904

                                          
Query: 518     agcatcaacgagcgggtctgcaaatgc 544
               ||||||||| || || |||||| ||||
Sbjct: 8360903 agcatcaacaagaggatctgcagatgc 8360877

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>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0011N12
          Length = 158586

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                         
Query: 216   gtccggaagcttgtgaagaggcccatgatgacacaggcgagcaggatgacgagcacctcc 275
             ||||||||||| |||||||||||||| ||||  ||  |||| ||||||| ||| ||||||
Sbjct: 14266 gtccggaagctggtgaagaggcccattatgatgcacacgaggaggatgatgagtacctcc 14207

                                                                         
Query: 276   gaagagaagtcccacgtcagctccctgaagtagatgagcgccaagaacacgcccagacac 335
             || ||||| ||||| || |   |||| | ||| |  || |||||||||||| | || || 
Sbjct: 14206 gatgagaaatcccaggttaagcccctcacgtaaacaagggccaagaacacggcgaggcag 14147

                                       
Query: 336   agcgtgttgttcatggtcacgccacc 361
             || ||||||||||||||||| |||||
Sbjct: 14146 agtgtgttgttcatggtcactccacc 14121



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 117/147 (79%)
 Strand = Plus / Minus

                                                                         
Query: 398   cttcttcctgctggcgaagatgatggctgagacagcctcgctggaattggttgccagagg 457
             |||||||| ||| || || || || ||||||||||||||||||||||| || ||||  ||
Sbjct: 13873 cttcttccggctagcaaatataattgctgagacagcctcgctggaattagtagccaaggg 13814

                                                                         
Query: 458   caggccgatgaacgagacaaagaaggacgggatgtgtgtggcattagaaaagttgtggac 517
             ||   | ||||| ||||  || ||||| || || ||||| ||||| || || ||||| ||
Sbjct: 13813 cattacaatgaaggagatgaaaaaggagggaatatgtgtagcatttgagaaattgtgcac 13754

                                        
Query: 518   agcatcaacgagcgggtctgcaaatgc 544
             ||||||||| || || |||||| ||||
Sbjct: 13753 agcatcaacaagaggatctgcagatgc 13727

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>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0090H18
          Length = 174842

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 118/146 (80%)
 Strand = Plus / Minus

                                                                          
Query: 216    gtccggaagcttgtgaagaggcccatgatgacacaggcgagcaggatgacgagcacctcc 275
              ||||||||||| |||||||||||||| ||||  ||  |||| ||||||| ||| ||||||
Sbjct: 138087 gtccggaagctggtgaagaggcccattatgatgcacacgaggaggatgatgagtacctcc 138028

                                                                          
Query: 276    gaagagaagtcccacgtcagctccctgaagtagatgagcgccaagaacacgcccagacac 335
              || ||||| ||||| || |   |||| | ||| |  || |||||||||||| | || || 
Sbjct: 138027 gatgagaaatcccaggttaagcccctcacgtaaacaagggccaagaacacggcgaggcag 137968

                                        
Query: 336    agcgtgttgttcatggtcacgccacc 361
              || ||||||||||||||||| |||||
Sbjct: 137967 agtgtgttgttcatggtcactccacc 137942



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 117/147 (79%)
 Strand = Plus / Minus

                                                                          
Query: 398    cttcttcctgctggcgaagatgatggctgagacagcctcgctggaattggttgccagagg 457
              |||||||| ||| || || || || ||||||||||||||||||||||| || ||||  ||
Sbjct: 137694 cttcttccggctagcaaatataattgctgagacagcctcgctggaattagtagccaaggg 137635

                                                                          
Query: 458    caggccgatgaacgagacaaagaaggacgggatgtgtgtggcattagaaaagttgtggac 517
              ||   | ||||| ||||  || ||||| || || ||||| ||||| || || ||||| ||
Sbjct: 137634 cattacaatgaaggagatgaaaaaggagggaatatgtgtagcatttgagaaattgtgcac 137575

                                         
Query: 518    agcatcaacgagcgggtctgcaaatgc 544
              ||||||||| || || |||||| ||||
Sbjct: 137574 agcatcaacaagaggatctgcagatgc 137548

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>ref|XM_363303.1| Magnaporthe grisea 70-15 hypothetical protein (MG01229.4) partial
           mRNA
          Length = 810

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 398 cttcttcctgctggcgaagatgat 421
           ||||||||||||||||||||||||
Sbjct: 294 cttcttcctgctggcgaagatgat 317

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>gb|AC166937.2| Mus musculus BAC clone RP24-121A12 from chromosome 10, complete
             sequence
          Length = 183115

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 390   gtcctctgcttcttcctgctggcg 413
             ||||||||||||||||||||||||
Sbjct: 92661 gtcctctgcttcttcctgctggcg 92638

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>dbj|AK220271.1| Mus musculus premature mRNA for mKIAA1814 protein
          Length = 7688

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 390  gtcctctgcttcttcctgctggcg 413
            ||||||||||||||||||||||||
Sbjct: 5296 gtcctctgcttcttcctgctggcg 5319

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>gb|AC152413.5| Mus musculus BAC clone RP23-431A21 from chromosome 10, complete
             sequence
          Length = 195951

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 390   gtcctctgcttcttcctgctggcg 413
             ||||||||||||||||||||||||
Sbjct: 42153 gtcctctgcttcttcctgctggcg 42176

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>emb|BX088594.5| Zebrafish DNA sequence from clone RP71-1G17 in linkage group 1,
             complete sequence
          Length = 144022

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 586   tggcaatacaccagccagggtt 607
             ||||||||||||||||||||||
Sbjct: 87425 tggcaatacaccagccagggtt 87446

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>gb|AC005368.1| Homo sapiens chromosome 5, BAC clone 194j18 (LBNL H158), complete
            sequence
          Length = 118995

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 366  acctctgagaaagtgagggagcaag 390
            |||||| ||||||||||||||||||
Sbjct: 3377 acctcttagaaagtgagggagcaag 3401

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>gb|AC008781.7| Homo sapiens chromosome 5 clone CTD-2024I7, complete sequence
          Length = 205516

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 366    acctctgagaaagtgagggagcaag 390
              |||||| ||||||||||||||||||
Sbjct: 114434 acctcttagaaagtgagggagcaag 114410

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>ref|NM_122383.2| Arabidopsis thaliana unknown protein AT5G24740 mRNA, complete cds
          Length = 10043

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 387  caagtcctctgcttcttcct 406
            ||||||||||||||||||||
Sbjct: 9834 caagtcctctgcttcttcct 9815

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>ref|XM_483110.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 992

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 gtacagcaggtacgccacca 192
           ||||||||||||||||||||
Sbjct: 221 gtacagcaggtacgccacca 202

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>gb|AC104192.11| Mus musculus chromosome 5, clone RP24-439L10, complete sequence
          Length = 155839

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 498    gcattagaaaagttgtggac 517
              ||||||||||||||||||||
Sbjct: 141565 gcattagaaaagttgtggac 141584

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>gb|BC081611.1| Danio rerio zgc:92159, mRNA (cDNA clone MGC:92159 IMAGE:7049991),
           complete cds
          Length = 1410

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 176 cagcaggtacgccaccagac 195
           ||||||||||||||||||||
Sbjct: 790 cagcaggtacgccaccagac 771

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>gb|U41553.1| Caenorhabditis elegans cosmid ZK1193, complete sequence
          Length = 33075

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 62    aaattacaatgagtcaaaaatcaa 85
             ||||||| ||||||||||||||||
Sbjct: 28693 aaattactatgagtcaaaaatcaa 28716

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>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21
             Contains the 3' end of the gene for a novel protein
             similar to sorting nexin 7 (SNX7), the TSCOT gene for
             thymic stromal co-transporter, a pseudogene similar to Mus
             musculus major urinary proteins and a CpG island, complete
             sequence
          Length = 141659

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 492   tgtgtggcattagaaaagtt 511
             ||||||||||||||||||||
Sbjct: 85543 tgtgtggcattagaaaagtt 85562

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>emb|AL392145.1|ATT4C12 Arabidopsis thaliana DNA chromosome 5, BAC clone T4C12 (ESSA project)
          Length = 87871

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 387  caagtcctctgcttcttcct 406
            ||||||||||||||||||||
Sbjct: 4265 caagtcctctgcttcttcct 4284

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>ref|NM_001004590.1| Danio rerio zgc:92159 (zgc:92159), mRNA
          Length = 1410

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 176 cagcaggtacgccaccagac 195
           ||||||||||||||||||||
Sbjct: 790 cagcaggtacgccaccagac 771

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>gb|AY119124.1| Drosophila melanogaster RE27864 full insert cDNA
          Length = 3346

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 407  gctggcgaagatgatggctgagac 430
            |||||||||||||| |||||||||
Sbjct: 2312 gctggcgaagatgaaggctgagac 2289

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>ref|NM_206141.1| Drosophila melanogaster CG33456-PA (CG33456) mRNA, complete cds
          Length = 3329

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 407  gctggcgaagatgatggctgagac 430
            |||||||||||||| |||||||||
Sbjct: 2312 gctggcgaagatgaaggctgagac 2289

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>gb|AC025538.6| Homo sapiens BAC clone RP11-274J2 from 4, complete sequence
          Length = 161478

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   agaaagtgagggagcaagtc 392
             ||||||||||||||||||||
Sbjct: 42705 agaaagtgagggagcaagtc 42724

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>dbj|AK169827.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430029O17
           product:hypothetical protein, full insert sequence
          Length = 1365

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 501 ttagaaaagttgtggacagc 520
           ||||||||||||||||||||
Sbjct: 512 ttagaaaagttgtggacagc 531

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>gb|AC099030.1| Drosophila melanogaster, chromosome 2R, region 53F-54X, BAC clone
             BACR09M08, complete sequence
          Length = 179283

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 407   gctggcgaagatgatggctgagac 430
             |||||||||||||| |||||||||
Sbjct: 98490 gctggcgaagatgaaggctgagac 98513

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>gb|AC118231.9| Mus musculus chromosome 5, clone RP23-462J24, complete sequence
          Length = 186083

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 498    gcattagaaaagttgtggac 517
              ||||||||||||||||||||
Sbjct: 162487 gcattagaaaagttgtggac 162468

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>emb|BX248230.21| Zebrafish DNA sequence from clone CH211-213O11 in linkage group 11,
             complete sequence
          Length = 217432

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   cagcaggtacgccaccagac 195
             ||||||||||||||||||||
Sbjct: 12978 cagcaggtacgccaccagac 12997

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>dbj|AK084473.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:D330004F12 product:unclassifiable, full
           insert sequence
          Length = 993

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 501 ttagaaaagttgtggacagc 520
           ||||||||||||||||||||
Sbjct: 140 ttagaaaagttgtggacagc 159

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>gb|BC096689.1| Mus musculus cDNA clone IMAGE:3825518
          Length = 1084

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 501 ttagaaaagttgtggacagc 520
           ||||||||||||||||||||
Sbjct: 577 ttagaaaagttgtggacagc 558

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 173      gtacagcaggtacgccacca 192
                ||||||||||||||||||||
Sbjct: 24329567 gtacagcaggtacgccacca 24329586

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>gb|BC030470.1| Mus musculus, Similar to ring finger protein 4, clone
           IMAGE:5366420, mRNA
          Length = 1107

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 501 ttagaaaagttgtggacagc 520
           ||||||||||||||||||||
Sbjct: 546 ttagaaaagttgtggacagc 565

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>dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19
          Length = 84129

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    aacacaacaaacacctcgaa 49
             ||||||||||||||||||||
Sbjct: 58252 aacacaacaaacacctcgaa 58271

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>dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0686H11
          Length = 135273

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   gtacagcaggtacgccacca 192
             ||||||||||||||||||||
Sbjct: 69871 gtacagcaggtacgccacca 69890

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>gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, complete sequence
          Length = 167628

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    gtcaaaaatcaaactcaagc 93
             ||||||||||||||||||||
Sbjct: 71144 gtcaaaaatcaaactcaagc 71163

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>dbj|AK065316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P08, full
           insert sequence
          Length = 992

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 gtacagcaggtacgccacca 192
           ||||||||||||||||||||
Sbjct: 221 gtacagcaggtacgccacca 202

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>gb|AF030104.1|MMCLCNVI4 Mus musculus putative chloride channel protein CLC6 (Clc6), exons 5-18
          Length = 14925

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 578   cacagctttggcaatacaccagcc 601
             |||||| |||||||||||||||||
Sbjct: 13932 cacagccttggcaatacaccagcc 13955

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>gb|AE003805.3| Drosophila melanogaster chromosome 2R, section 45 of 73 of the complete
              sequence
          Length = 272948

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 407    gctggcgaagatgatggctgagac 430
              |||||||||||||| |||||||||
Sbjct: 216987 gctggcgaagatgaaggctgagac 217010

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>gb|AC004641.1|AC004641 Drosophila melanogaster DNA sequence (P1s DS07321 (D175), DS05993
            (D241), and DS06306 (D173)), complete sequence
          Length = 154985

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 407  gctggcgaagatgatggctgagac 430
            |||||||||||||| |||||||||
Sbjct: 7307 gctggcgaagatgaaggctgagac 7284

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>emb|AL662809.14| Mouse DNA sequence from clone RP23-441I8 on chromosome 11, complete
             sequence
          Length = 103129

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 501   ttagaaaagttgtggacagc 520
             ||||||||||||||||||||
Sbjct: 62014 ttagaaaagttgtggacagc 61995

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>emb|CT009718.13| Mouse DNA sequence from clone RP23-95L9 on chromosome 13, complete
             sequence
          Length = 206707

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 567   agcaggtaccccacagctttggca 590
             |||||||||||||||||| |||||
Sbjct: 20857 agcaggtaccccacagctctggca 20880

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>dbj|D83997.1| Capparis masaikai mRNA for mabinlin, complete cds
          Length = 630

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 131 gaagacgaagtcgaggacgtaaacgatg 158
           |||||||||||||||||||  |||||||
Sbjct: 236 gaagacgaagtcgaggacgacaacgatg 263


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,828,355
Number of Sequences: 3902068
Number of extensions: 4828355
Number of successful extensions: 86578
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86427
Number of HSP's gapped (non-prelim): 140
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result