ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4o20 |
|---|---|
| Clone Library Name | barley_pub |
>ALA2_PANMI (P34106) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT)| (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2) Length = 482 Score = 128 bits (322), Expect = 8e-30 Identities = 56/105 (53%), Positives = 79/105 (75%) Frame = -1 Query: 511 MTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTV 332 + D FN+ + CN EGAMY FPQI LP++A++ AK+A K PD +Y L+LLE+TGI V Sbjct: 378 LEDAFNNLEGISCNKAEGAMYLFPQIHLPKKAIEAAKAANKAPDAFYALRLLESTGIVVV 437 Query: 331 PGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQYQD 197 PGSGFGQ G +H+R TILP E+ +PA+++ FK F+++FM +Y+D Sbjct: 438 PGSGFGQVPGTWHIRCTILPQEDKIPAVITRFKAFHEAFMAEYRD 482
>ALA2_HORVU (P52894) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT)| (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2) Length = 482 Score = 125 bits (313), Expect = 9e-29 Identities = 56/101 (55%), Positives = 74/101 (73%) Frame = -1 Query: 499 FNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSG 320 FN + CN EGAMY FPQI LPQ+A++ AK+A K PD +Y L+LLE+TGI VPGSG Sbjct: 382 FNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSG 441 Query: 319 FGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQYQD 197 FGQ G +H R TILP E+ +PA++S F F+++FM +Y+D Sbjct: 442 FGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEYRD 482
>ALAT_HUMAN (P24298) Alanine aminotransferase (EC 2.6.1.2) (Glutamic--pyruvic| transaminase) (GPT) (Glutamic--alanine transaminase) Length = 495 Score = 107 bits (267), Expect = 2e-23 Identities = 47/99 (47%), Positives = 67/99 (67%) Frame = -1 Query: 499 FNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSG 320 FN + CN +GAMYSFP+++LP RA++ A+ G PD+++CL+LLE TGI VPGSG Sbjct: 396 FNEAPGISCNPVQGAMYSFPRVQLPPRAVERAQELGLAPDMFFCLRLLEETGICVVPGSG 455 Query: 319 FGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQY 203 FGQ+EG +H R TILP E + ++ +F+ F +Y Sbjct: 456 FGQREGTYHFRMTILPPLEKLRLLLEKLSRFHAKFTLEY 494
>ALAT_MOUSE (Q8QZR5) Alanine aminotransferase (EC 2.6.1.2) (Glutamic--pyruvic| transaminase) (GPT) (Glutamic--alanine transaminase) Length = 495 Score = 105 bits (263), Expect = 6e-23 Identities = 48/99 (48%), Positives = 65/99 (65%) Frame = -1 Query: 499 FNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSG 320 FN + CN +GAMYSFPQI+LP +A+ A+ G PD+++CL LLE TGI VPGSG Sbjct: 396 FNEAPGIRCNPVQGAMYSFPQIQLPLKAVQRAQDLGLAPDMFFCLCLLEETGICVVPGSG 455 Query: 319 FGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQY 203 FGQ+EG +H R TILP E + ++ + F+ F +Y Sbjct: 456 FGQQEGTYHFRMTILPPMEKLRVLLEKLRHFHAKFTHEY 494
>ALAT_RAT (P25409) Alanine aminotransferase (EC 2.6.1.2) (Glutamic--pyruvic| transaminase) (GPT) (Glutamic--alanine transaminase) Length = 495 Score = 104 bits (259), Expect = 2e-22 Identities = 47/99 (47%), Positives = 64/99 (64%) Frame = -1 Query: 499 FNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSG 320 FN + CN +GAMYSFPQ++LP +A+ A+ G PD+++CL LLE TGI VPGSG Sbjct: 396 FNEAPGIRCNPVQGAMYSFPQVQLPLKAVQRAQELGLAPDMFFCLCLLEETGICVVPGSG 455 Query: 319 FGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQY 203 FGQ+EG +H R TILP E + ++ F+ F +Y Sbjct: 456 FGQQEGTYHFRMTILPPMEKLRLLLEKLSHFHAKFTHEY 494
>ALAM_YEAST (P52893) Putative alanine aminotransferase, mitochondrial precursor| (EC 2.6.1.2) (Glutamic--pyruvic transaminase) (GPT) (Glutamic--alanine transaminase) Length = 592 Score = 97.4 bits (241), Expect = 2e-20 Identities = 48/101 (47%), Positives = 64/101 (63%) Frame = -1 Query: 499 FNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSG 320 FNS + C +GAMY FP+I LP +A+ A+ PD +YC KLLE+TGI TVPGSG Sbjct: 495 FNSLEGIECQKPQGAMYLFPKIDLPFKAVQEARHLELTPDEFYCKKLLESTGICTVPGSG 554 Query: 319 FGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQYQD 197 FGQ+ G +HLRTT L + + ++ F+ F DQY+D Sbjct: 555 FGQEPGTYHLRTTFLAPGLEW---IKKWESFHKEFFDQYRD 592
>ALAT_YEAST (P52892) Putative alanine aminotransferase (EC 2.6.1.2)| (Glutamic--pyruvic transaminase) (GPT) (Glutamic--alanine transaminase) Length = 507 Score = 91.3 bits (225), Expect = 1e-18 Identities = 42/106 (39%), Positives = 66/106 (62%) Frame = -1 Query: 514 IMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGIST 335 ++ + F + C +GAMY FP++ LP++A+ ++ G EPD +YC LLE+TGI T Sbjct: 405 LLYETFKELEGIECQKPQGAMYLFPRLVLPKKALCESERLGIEPDEFYCTSLLESTGICT 464 Query: 334 VPGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQYQD 197 VPGSGFGQ+ G +H+RTT L + +K+F+ F +Y++ Sbjct: 465 VPGSGFGQRPGTYHVRTTFLAPGTKW---IQDWKEFHQDFFSKYRN 507
>ALAT_SCHPO (Q10334) Putative alanine aminotransferase (EC 2.6.1.2)| (Glutamic--pyruvic transaminase) (GPT) (Glutamic--alanine transaminase) Length = 505 Score = 76.3 bits (186), Expect = 5e-14 Identities = 38/102 (37%), Positives = 58/102 (56%) Frame = -1 Query: 505 DGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPG 326 +G + V C GAMY P + LP++ + AK+ +PD +Y ++LL+ +GI VPG Sbjct: 407 EGTKRMKRVSCLEPHGAMYLHPSVSLPEKLITTAKAQKIQPDEFYAIELLKRSGICVVPG 466 Query: 325 SGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQYQ 200 SGFGQ EG +H+R T L + + F K ++ MD Y+ Sbjct: 467 SGFGQPEGDYHIRITFLAKGTE---YIERFVKAHNEIMDLYE 505
>AAT_SULTO (Q972A2) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 399 Score = 39.3 bits (90), Expect = 0.006 Identities = 27/101 (26%), Positives = 47/101 (46%) Frame = -1 Query: 514 IMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGIST 335 IM + + + + ++GA Y FP I ++ K A + LKL+E G++T Sbjct: 304 IMYEELKKIKGIQVHKSQGAFYMFPFIG------EILKKANLSVKDF-SLKLIEEKGVTT 356 Query: 334 VPGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFM 212 +PG F + G +R + E+D+ + K+F D M Sbjct: 357 IPGEVFPLEVGKDFVRLSFAVKEDDIREGIKRMKEFIDMLM 397
>AATB2_RHIME (Q06191) Aspartate aminotransferase B (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 410 Score = 38.9 bits (89), Expect = 0.008 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = -1 Query: 514 IMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGK--EPDVYYCLKLLEATGI 341 ++ +G N+ + C EGA Y+F R + +GK E D +C LLE + + Sbjct: 314 LVVNGLNAIEGLDCRVPEGAFYTFSGCAGVARRVT---PSGKRIESDTDFCAYLLEDSHV 370 Query: 340 STVPGSGFG 314 + VPGS FG Sbjct: 371 AVVPGSAFG 379
>AAT1_BACSU (P53001) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 393 Score = 37.4 bits (85), Expect = 0.024 Identities = 23/59 (38%), Positives = 29/59 (49%) Frame = -1 Query: 475 CNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGFGQKEGV 299 C EGA Y FP A + A+S G + + LLE ++ VPGSGFG E V Sbjct: 315 CVKPEGAFYLFPN------AKEAAQSCGFKDVDEFVKALLEEEKVAIVPGSGFGSPENV 367
>AAT_RHILP (O86459) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 400 Score = 36.2 bits (82), Expect = 0.054 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = -1 Query: 496 NSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGK--EPDVYYCLKLLEATGISTVPGS 323 N + +VC EGA Y +P + + +GK E D + +LLE+ G++ V GS Sbjct: 310 NQAKGIVCPVPEGAFYVYPSCK---GLIGKTAPSGKVIETDEDFVSELLESEGVAVVHGS 366 Query: 322 GFG 314 FG Sbjct: 367 AFG 369
>AATB1_RHIME (P58350) Aspartate aminotransferase B (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 410 Score = 35.8 bits (81), Expect = 0.070 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = -1 Query: 514 IMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGK--EPDVYYCLKLLEATGI 341 ++ +G N+ + C EGA Y+F + +GK + D +C LLE + Sbjct: 314 LVVNGLNAIDGLDCRVPEGAFYTFSGCA---GVLGKVTPSGKRIKTDTDFCAYLLEDAHV 370 Query: 340 STVPGSGFG 314 + VPGS FG Sbjct: 371 AVVPGSAFG 379
>AAT_BACST (Q59228) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 393 Score = 35.0 bits (79), Expect = 0.12 Identities = 25/71 (35%), Positives = 31/71 (43%) Frame = -1 Query: 475 CNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGFGQKEGVF 296 C +GA Y FP R + A AG + LLE ++ VPGSGFG + V Sbjct: 315 CVKPQGAFYLFPNAR------EAAAMAGCRTVDEFVAALLEEAKVALVPGSGFGAPDNVR 368 Query: 295 HLRTTILPAEE 263 T L A E Sbjct: 369 LSYATSLDALE 379
>AATA_RHIME (Q02635) Aspartate aminotransferase A (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 400 Score = 32.7 bits (73), Expect = 0.60 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Frame = -1 Query: 496 NSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSA--GK--EPDVYYCLKLLEATGISTVP 329 N + + C EGA Y +P A + K+A GK E D + +LLE G++ V Sbjct: 310 NQAKGISCPTPEGAFYVYPSC-----AGLIGKTAPSGKVIETDEDFVSELLETEGVAVVH 364 Query: 328 GSGFG 314 GS FG Sbjct: 365 GSAFG 369
>AAT_STRVG (Q60013) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 397 Score = 32.3 bits (72), Expect = 0.78 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Frame = -1 Query: 511 MTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEP--DVYYCLKLLEATGIS 338 M N V C EGA Y++P + + + + GK P V +L+ ++ Sbjct: 302 MVKMLNEIDGVFCPTPEGAFYAYPSV----KELLGKEIRGKRPQSSVELAALILDEVEVA 357 Query: 337 TVPGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKK 230 VPG FG +LR + +ED+ +S +K Sbjct: 358 VVPGEAFGTPG---YLRLSYALGDEDLVEGVSRIQK 390
>AAT_MYCTU (P63498) Probable aspartate aminotransferase (EC 2.6.1.1)| (Transaminase A) (ASPAT) Length = 429 Score = 31.6 bits (70), Expect = 1.3 Identities = 28/94 (29%), Positives = 37/94 (39%) Frame = -1 Query: 496 NSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGF 317 N V C GA+Y+FP RL D+ + D L LL + I G+GF Sbjct: 343 NEIPGVSCVKPAGALYAFP--RLDPEVYDI------DDDEQLVLDLLLSEKILVTQGTGF 394 Query: 316 GQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSF 215 HLR LP D+ A + F S+ Sbjct: 395 NW-PAPDHLRLVTLPWSRDLAAAIERLGNFLVSY 427
>AAT_MYCBO (P63499) Probable aspartate aminotransferase (EC 2.6.1.1)| (Transaminase A) (ASPAT) Length = 429 Score = 31.6 bits (70), Expect = 1.3 Identities = 28/94 (29%), Positives = 37/94 (39%) Frame = -1 Query: 496 NSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGF 317 N V C GA+Y+FP RL D+ + D L LL + I G+GF Sbjct: 343 NEIPGVSCVKPAGALYAFP--RLDPEVYDI------DDDEQLVLDLLLSEKILVTQGTGF 394 Query: 316 GQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSF 215 HLR LP D+ A + F S+ Sbjct: 395 NW-PAPDHLRLVTLPWSRDLAAAIERLGNFLVSY 427
>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit| 4) (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit) (Proximal sequence element-binding transcription factor alpha subunit) (PSE-binding factor alpha Length = 1469 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/35 (51%), Positives = 21/35 (60%) Frame = -3 Query: 377 LLLPQASGSHWNIHCSRLRFWSERRGVPSEDNDPA 273 +L P +SGSH I S L SE +PSED DPA Sbjct: 20 ILDPGSSGSHVEISESSLESDSEADSLPSEDLDPA 54
>AAT_SYNY3 (Q55128) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 389 Score = 31.2 bits (69), Expect = 1.7 Identities = 18/72 (25%), Positives = 35/72 (48%) Frame = -1 Query: 514 IMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGIST 335 ++ +G N + C +GA Y F +D+AK+ + + +LLE+ ++ Sbjct: 303 VIVEGINQIAGLSCPNPKGAFYVF---------VDIAKTGLNSLE--FSARLLESHQVAV 351 Query: 334 VPGSGFGQKEGV 299 +PG+ FG + V Sbjct: 352 IPGAAFGADDCV 363
>YARA_PROST (P46117) Putative HTH-type transcriptional regulator in aarA| 3'region Length = 282 Score = 30.8 bits (68), Expect = 2.3 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -1 Query: 394 GKEPDVYYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILP 272 G PD+ + LKL G ST+ + FGQ E V L +LP Sbjct: 190 GNTPDINHMLKLANKKGCSTIVLTRFGQDEAV-RLADLVLP 229
>THIC_RHILO (Q98AZ3) Thiamine biosynthesis protein thiC| Length = 619 Score = 30.4 bits (67), Expect = 3.0 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = -1 Query: 442 PQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEE 263 PQIR+P R + V +AG+ P + Y + +G T P ++G+ LR + A Sbjct: 35 PQIRVPMREISVHPTAGEPPVIVY-----DPSGPYTDPTVETSIEKGLARLRHEWITARG 89 Query: 262 DMPA 251 D+ A Sbjct: 90 DVEA 93
>HAGA1_PORGI (P59915) Hemagglutinin A precursor| Length = 2164 Score = 30.0 bits (66), Expect = 3.9 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Frame = +3 Query: 213 MNESLNFLKLDMIAGMSSSA-GRIVVLRWNTPSF*PKPEPGTVDI 344 +N +++ ++ + + ++ SA G+ V L+W+ P+ P P PGT + Sbjct: 1369 VNVTVDPVQFNPVQNLTGSAVGQKVTLKWDAPNGTPNPNPGTTTL 1413 Score = 30.0 bits (66), Expect = 3.9 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Frame = +3 Query: 213 MNESLNFLKLDMIAGMSSSA-GRIVVLRWNTPSF*PKPEPGTVDI 344 +N +++ ++ + + ++ SA G+ V L+W+ P+ P P PGT + Sbjct: 917 VNVTVDPVQFNPVQNLTGSAVGQKVTLKWDAPNGTPNPNPGTTTL 961 Score = 29.6 bits (65), Expect = 5.0 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +3 Query: 264 SSAGRIVVLRWNTPSF*PKPEPGTVDI 344 S+ G+ V L+W+ P+ P P PGT + Sbjct: 483 SAVGQKVTLKWDAPNGTPNPNPGTTTL 509
>NUOL_CAMJE (Q9PMA7) NADH-quinone oxidoreductase chain L (EC 1.6.99.5) (NADH| dehydrogenase I, chain L) (NDH-1, chain L) Length = 596 Score = 29.6 bits (65), Expect = 5.0 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = +1 Query: 40 ISPLYISSIATSFLHHSYSSQLINQLQLLVEKSSIILIC 156 +SPL + +I F HS+ L +L + ++ I++IC Sbjct: 446 MSPLMVLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMIC 484
>HAGA2_PORGI (Q51845) Hemagglutinin A precursor| Length = 2628 Score = 29.6 bits (65), Expect = 5.0 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +3 Query: 264 SSAGRIVVLRWNTPSF*PKPEPGTVDI 344 S+ G+ V L+W+ P+ P P PGT + Sbjct: 483 SAVGQKVTLKWDAPNGTPNPNPGTTTL 509
>PSD9_YEAST (P40555) Probable 26S proteasome regulatory subunit p27 (Proteasome| non-ATPase subunit 2) Length = 220 Score = 28.9 bits (63), Expect = 8.6 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -3 Query: 314 SERRGVPSEDNDPACGGGHAGNHVELQEVQRLVHGPVPRPL 192 S++ + +D + G HA NH +LQ +Q +V RPL Sbjct: 146 SDKADIKVDDKLISIGNVHAANHSKLQNIQMVVMKNEDRPL 186 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,560,613 Number of Sequences: 219361 Number of extensions: 1582688 Number of successful extensions: 4484 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4346 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4479 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
