ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4o17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RPIA_THEVO (Q97AU2) Ribose-5-phosphate isomerase A (EC 5.3.1.6) ... 28 5.5
2RPIA_ARATH (Q9ZU38) Probable ribose-5-phosphate isomerase (EC 5.... 28 9.4

>RPIA_THEVO (Q97AU2) Ribose-5-phosphate isomerase A (EC 5.3.1.6)|
           (Phosphoriboisomerase A) (PRI)
          Length = 241

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 65  LFLTDNGNYIVEMFF 21
           LF+TDNGNYI +M F
Sbjct: 168 LFITDNGNYIADMKF 182



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>RPIA_ARATH (Q9ZU38) Probable ribose-5-phosphate isomerase (EC 5.3.1.6)|
           (Phosphoriboisomerase)
          Length = 265

 Score = 27.7 bits (60), Expect = 9.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 62  FLTDNGNYIVEMFFDD 15
           F+TDNGNYIV+M  ++
Sbjct: 205 FVTDNGNYIVDMHVEE 220


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,715,908
Number of Sequences: 219361
Number of extensions: 68835
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 80,573,946
effective HSP length: 12
effective length of database: 77,941,614
effective search space used: 1870598736
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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