ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4o17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_471731.1| Oryza sativa (japonica cultivar-group), predic... 88 6e-15
2emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4,... 88 6e-15
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 88 6e-15
4dbj|AK103443.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 6e-15
5gb|AY826894.1| Isochrysis galbana clone IGRPI1 chloroplast ribos... 52 3e-04
6dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.083
7gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 44 0.083
8gb|AY541063.1| Nocardia uniformis subsp. tsuyamanensis monocycli... 42 0.33
9gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 geno... 40 1.3
10gb|AY907424.1| Rhizobium etli bv. phaseoli strain IE2755 glutami... 40 1.3
11gb|AY907423.1| Rhizobium etli bv. mimosae strain IE4771 glutamin... 40 1.3
12gb|AY907422.1| Rhizobium etli bv. phaseoli strain IE4837 glutami... 40 1.3
13gb|AY907421.1| Rhizobium etli bv. phaseoli strain IE4874 glutami... 40 1.3
14gb|AY907420.1| Rhizobium etli bv. phaseoli strain IE1004 glutami... 40 1.3
15gb|AY907419.1| Rhizobium etli bv. phaseoli strain IE2704 glutami... 40 1.3
16gb|AY907418.1| Rhizobium etli bv. phaseoli strain IE950 glutamin... 40 1.3
17gb|AY907415.1| Rhizobium etli bv. phaseoli strain IE1009 glutami... 40 1.3
18gb|AY907414.1| Rhizobium etli bv. phaseoli strain IE4877 glutami... 40 1.3
19gb|AY907413.1| Rhizobium etli bv. phaseoli strain IE4804 glutami... 40 1.3
20gb|AY907412.1| Rhizobium etli bv. phaseoli strain IE2730 glutami... 40 1.3
21gb|AY907411.1| Rhizobium etli bv. phaseoli strain IE963 glutamin... 40 1.3
22gb|AY907410.1| Rhizobium etli bv. phaseoli strain IE4777 glutami... 40 1.3
23gb|AY907409.1| Rhizobium etli bv. phaseoli strain IE954 glutamin... 40 1.3
24gb|AY907408.1| Rhizobium etli bv. phaseoli strain IE4876 glutami... 40 1.3
25gb|AY907407.1| Rhizobium etli bv. phaseoli strain IE4815 glutami... 40 1.3
26gb|AY907405.1| Rhizobium etli bv. phaseoli strain IE4794 glutami... 40 1.3
27gb|AY907404.1| Rhizobium etli bv. phaseoli strain IE4813 glutami... 40 1.3
28gb|AY907403.1| Rhizobium etli bv. phaseoli strain IE4810 glutami... 40 1.3
29gb|AY929465.1| Rhizobium etli bv. phaseoli strain 4PR-2 glutamin... 40 1.3
30gb|AY929464.1| Rhizobium etli bv. phaseoli strain GR-12 glutamin... 40 1.3
31gb|AY929463.1| Rhizobium etli bv. phaseoli strain KIM5S glutamin... 40 1.3
32ref|XM_469458.1| Oryza sativa (japonica cultivar-group), mRNA 40 1.3
33gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 1.3
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 1.3
35gb|DQ118643.1| Pavlova lutheri isolate 3028 chloroplast ribulose... 40 1.3
36gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 1.3
37dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.3
38gb|AY826893.1| Heterocapsa triquetra clone HTRPI1 chloroplast ri... 40 1.3
39gb|AF529014.1| Rhizobium etli bv. phaseoli IE2730 glutamine synt... 40 1.3
40dbj|AK120249.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.3
41gb|AF169587.1|AF169587 Rhizobium galegae glutamine synthetase II... 40 1.3
42gb|AF169586.1|AF169586 Rhizobium leguminosarum bv. viciae glutam... 40 1.3
43dbj|AK102312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.3
44gb|AF063974.1|AF063974 Rhizobium sp. 2M164 glutamine synthetase ... 40 1.3
45gb|AF063960.1|AF063960 Rhizobium sp. CIAM540 glutamine synthetas... 40 1.3
46gb|AF063956.1|AF063956 Rhizobium sp. CIAM1141 glutamine syntheta... 40 1.3
47gb|AY494799.1| Bradyrhizobium sp. ICMP 12835 glutamine synthetas... 40 1.3
48gb|AY494795.1| Rhizobium leguminosarum ICMP 14642 glutamine synt... 40 1.3
49gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 38 5.1
50ref|XM_657815.1| Aspergillus nidulans FGSC A4 hypothetical prote... 38 5.1
51gb|AF532989.1| Mus musculus phosphoinositide 3 kinase P110delta ... 38 5.1
52gb|AF169585.1|AF169585 Rhizobium etli glutamine synthetase II (g... 38 5.1
53gb|AF063957.1|AF063957 Rhizobium sp. CIAM1143 glutamine syntheta... 38 5.1
54gb|AE017221.1| Thermus thermophilus HB27, complete genome 38 5.1 
>ref|XM_471731.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 828

 Score = 87.7 bits (44), Expect = 6e-15
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                   
Query: 3   gccgtgtatgccgtcgtcgaagaacatctcgacgatgtagttgccgttgtcggtga 58
           |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gccgcgtatgccatcctcgaagaacatctcgacgatgtagttgccgttgtcggtga 638
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>emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0023J03,
             complete sequence
          Length = 175555

 Score = 87.7 bits (44), Expect = 6e-15
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                     
Query: 3     gccgtgtatgccgtcgtcgaagaacatctcgacgatgtagttgccgttgtcggtga 58
             |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 69109 gccgcgtatgccatcctcgaagaacatctcgacgatgtagttgccgttgtcggtga 69054
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 87.7 bits (44), Expect = 6e-15
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                        
Query: 3        gccgtgtatgccgtcgtcgaagaacatctcgacgatgtagttgccgttgtcggtga 58
                |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 13855450 gccgcgtatgccatcctcgaagaacatctcgacgatgtagttgccgttgtcggtga 13855395
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>dbj|AK103443.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129E13, full
           insert sequence
          Length = 1182

 Score = 87.7 bits (44), Expect = 6e-15
 Identities = 53/56 (94%)
 Strand = Plus / Minus

                                                                   
Query: 3   gccgtgtatgccgtcgtcgaagaacatctcgacgatgtagttgccgttgtcggtga 58
           |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gccgcgtatgccatcctcgaagaacatctcgacgatgtagttgccgttgtcggtga 748
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>gb|AY826894.1| Isochrysis galbana clone IGRPI1 chloroplast ribose-5-phosphate
           isomerase mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 689

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 31  tcgacgatgtagttgccgttgtcggt 56
           ||||||||||||||||||||||||||
Sbjct: 352 tcgacgatgtagttgccgttgtcggt 327
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.083
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 32      cgacgatgtagttgccgttgtcggtg 57
               ||||||||||| ||||||||||||||
Sbjct: 1437222 cgacgatgtagatgccgttgtcggtg 1437197
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 44.1 bits (22), Expect = 0.083
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 31     tcgacgatgtagttgccgttgtcggt 56
              |||| |||||||||||||||||||||
Sbjct: 858684 tcgaagatgtagttgccgttgtcggt 858709
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>gb|AY541063.1| Nocardia uniformis subsp. tsuyamanensis monocyclic beta-lactam
             antibiotic nocardicin A biosynthesis gene cluster, partial
             sequence
          Length = 33451

 Score = 42.1 bits (21), Expect = 0.33
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    gccgtcgtcgaagaacatctc 32
             |||||||||||||||||||||
Sbjct: 32973 gccgtcgtcgaagaacatctc 32953
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>gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete
             sequence
          Length = 139074

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    cggtgaggaagaggtcctcc 72
             ||||||||||||||||||||
Sbjct: 86333 cggtgaggaagaggtcctcc 86352
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>gb|AY907424.1| Rhizobium etli bv. phaseoli strain IE2755 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907423.1| Rhizobium etli bv. mimosae strain IE4771 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907422.1| Rhizobium etli bv. phaseoli strain IE4837 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907421.1| Rhizobium etli bv. phaseoli strain IE4874 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907420.1| Rhizobium etli bv. phaseoli strain IE1004 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907419.1| Rhizobium etli bv. phaseoli strain IE2704 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907418.1| Rhizobium etli bv. phaseoli strain IE950 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907415.1| Rhizobium etli bv. phaseoli strain IE1009 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907414.1| Rhizobium etli bv. phaseoli strain IE4877 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907413.1| Rhizobium etli bv. phaseoli strain IE4804 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907412.1| Rhizobium etli bv. phaseoli strain IE2730 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907411.1| Rhizobium etli bv. phaseoli strain IE963 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907410.1| Rhizobium etli bv. phaseoli strain IE4777 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907409.1| Rhizobium etli bv. phaseoli strain IE954 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907408.1| Rhizobium etli bv. phaseoli strain IE4876 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907407.1| Rhizobium etli bv. phaseoli strain IE4815 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907405.1| Rhizobium etli bv. phaseoli strain IE4794 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907404.1| Rhizobium etli bv. phaseoli strain IE4813 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY907403.1| Rhizobium etli bv. phaseoli strain IE4810 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY929465.1| Rhizobium etli bv. phaseoli strain 4PR-2 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY929464.1| Rhizobium etli bv. phaseoli strain GR-12 glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>gb|AY929463.1| Rhizobium etli bv. phaseoli strain KIM5S glutamine synthetase II
           (glnII) gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>ref|XM_469458.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2973

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  cggtgaggaagaggtcctcc 72
           ||||||||||||||||||||
Sbjct: 911 cggtgaggaagaggtcctcc 930
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 14      cgtcgtcgaagaacatctcg 33
               ||||||||||||||||||||
Sbjct: 2989879 cgtcgtcgaagaacatctcg 2989860
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 53       cggtgaggaagaggtcctcc 72
                ||||||||||||||||||||
Sbjct: 28066772 cggtgaggaagaggtcctcc 28066753
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>gb|DQ118643.1| Pavlova lutheri isolate 3028 chloroplast ribulose phosphate
           isomerase mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 1069

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 31  tcgacgatgtagttgccgttgtcggtga 58
           ||||||||||| ||| ||||||||||||
Sbjct: 685 tcgacgatgtaattgtcgttgtcggtga 658
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 15      gtcgtcgaagaacatctcga 34
               ||||||||||||||||||||
Sbjct: 2992184 gtcgtcgaagaacatctcga 2992165
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 53       cggtgaggaagaggtcctcc 72
                ||||||||||||||||||||
Sbjct: 28158096 cggtgaggaagaggtcctcc 28158077
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>gb|AY826893.1| Heterocapsa triquetra clone HTRPI1 chloroplast ribose-5-phosphate
           isomerase mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 1177

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 31  tcgacgatgtagttgccgttgtcggtga 58
           |||||||||||||||| |||||| ||||
Sbjct: 843 tcgacgatgtagttgctgttgtccgtga 816
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>gb|AF529014.1| Rhizobium etli bv. phaseoli IE2730 glutamine synthetase II (glnII)
           gene, partial cds
          Length = 540

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 371 tcgtcgaagaacatctcgac 390
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>dbj|AK120249.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045D05, full
           insert sequence
          Length = 2962

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  cggtgaggaagaggtcctcc 72
           ||||||||||||||||||||
Sbjct: 913 cggtgaggaagaggtcctcc 932
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>gb|AF169587.1|AF169587 Rhizobium galegae glutamine synthetase II (glnII) gene, partial cds
          Length = 828

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 332 tcgtcgaagaacatctcgac 351
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>gb|AF169586.1|AF169586 Rhizobium leguminosarum bv. viciae glutamine synthetase II (glnII)
           gene, partial cds
          Length = 828

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 332 tcgtcgaagaacatctcgac 351
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>dbj|AK102312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090E08, full
           insert sequence
          Length = 2458

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  cggtgaggaagaggtcctcc 72
           ||||||||||||||||||||
Sbjct: 403 cggtgaggaagaggtcctcc 422
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>gb|AF063974.1|AF063974 Rhizobium sp. 2M164 glutamine synthetase II gene, partial cds
          Length = 888

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 392 tcgtcgaagaacatctcgac 411
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>gb|AF063960.1|AF063960 Rhizobium sp. CIAM540 glutamine synthetase II gene, partial cds
          Length = 884

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 392 tcgtcgaagaacatctcgac 411
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>gb|AF063956.1|AF063956 Rhizobium sp. CIAM1141 glutamine synthetase II gene, partial cds
          Length = 875

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 391 tcgtcgaagaacatctcgac 410
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>gb|AY494799.1| Bradyrhizobium sp. ICMP 12835 glutamine synthetase II (glnII) gene,
           partial cds
          Length = 828

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 332 tcgtcgaagaacatctcgac 351
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>gb|AY494795.1| Rhizobium leguminosarum ICMP 14642 glutamine synthetase II (glnII)
           gene, partial cds
          Length = 828

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 16  tcgtcgaagaacatctcgac 35
           ||||||||||||||||||||
Sbjct: 332 tcgtcgaagaacatctcgac 351
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 31      tcgacgatgtagttgccgt 49
               |||||||||||||||||||
Sbjct: 2840318 tcgacgatgtagttgccgt 2840336
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>ref|XM_657815.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5303.2), mRNA
          Length = 1788

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 45  gccgttgtcggtgaggaagaggt 67
           ||||| |||||||||||||||||
Sbjct: 945 gccgtcgtcggtgaggaagaggt 923
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>gb|AF532989.1| Mus musculus phosphoinositide 3 kinase P110delta (Pik3cd) gene,
             complete cds
          Length = 21152

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 57    gaggaagaggtcctcctgg 75
             |||||||||||||||||||
Sbjct: 17448 gaggaagaggtcctcctgg 17466
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>gb|AF169585.1|AF169585 Rhizobium etli glutamine synthetase II (glnII) gene, partial cds
          Length = 828

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 16  tcgtcgaagaacatctcga 34
           |||||||||||||||||||
Sbjct: 332 tcgtcgaagaacatctcga 350
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>gb|AF063957.1|AF063957 Rhizobium sp. CIAM1143 glutamine synthetase II gene, partial cds
          Length = 888

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 16  tcgtcgaagaacatctcga 34
           |||||||||||||||||||
Sbjct: 392 tcgtcgaagaacatctcga 410
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 57      gaggaagaggtcctcctgg 75
               |||||||||||||||||||
Sbjct: 1451538 gaggaagaggtcctcctgg 1451556


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 693,805
Number of Sequences: 3902068
Number of extensions: 693805
Number of successful extensions: 48074
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47573
Number of HSP's gapped (non-prelim): 501
length of query: 112
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 91
effective length of database: 17,151,101,840
effective search space: 1560750267440
effective search space used: 1560750267440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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