ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4o15 |
|---|---|
| Clone Library Name | barley_pub |
>DNAK2_SYNY3 (P22358) Chaperone protein dnaK2 (Heat shock protein 70-2) (Heat| shock 70 kDa protein 2) (HSP70-2) Length = 636 Score = 35.4 bits (80), Expect = 0.15 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Frame = -2 Query: 578 TARTCIGKRRKIMFYILHWSRPLTRARTSGILG----DGMIAPVINEGPPSSQITDDLKP 411 T T + + + ++L R + S LG DG+ P G P ++T D+ Sbjct: 420 TFSTAVDGQSNVEIHVLQGEREMANDNKS--LGTFRLDGI--PPAPRGVPQIEVTFDIDA 475 Query: 410 NAVINSTQEDEQAKEVENKSVTDADTVPAQSPAVPGSAKQQGEERYADKIR 258 N ++N T +D + ++ S+T A T+P V K+ ADK R Sbjct: 476 NGILNVTAKDRGTGKEQSISITGASTLP--DTEVDRMVKEAESNAAADKER 524
>XE7_HUMAN (Q02040) B-lymphocyte antigen precursor (B-lymphocyte surface| antigen) (721P) (Protein XE7) Length = 695 Score = 33.9 bits (76), Expect = 0.43 Identities = 21/69 (30%), Positives = 32/69 (46%) Frame = -1 Query: 510 DKSPYVRHPWRRNDSPGHKRRPPFQPDHR*SETKRRDKQHTRR*TSQGSGEQERHGCRHS 331 ++ P+ +H ++ +DSP RR PDH S +H R + + G R RH Sbjct: 620 ERRPHKKHAYK-DDSP---RRRSTSPDHTRSRRSHSKDRHRRERSRERRGSASRKHSRHR 675 Query: 330 ARSKPCSSR 304 RS+ SR Sbjct: 676 RRSERSRSR 684
>DNAK2_SYNEL (Q8DI58) Chaperone protein dnaK2 (Heat shock protein 70-2) (Heat| shock 70 kDa protein 2) (HSP70-2) Length = 640 Score = 33.5 bits (75), Expect = 0.57 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 4/87 (4%) Frame = -2 Query: 569 TCIGKRRKIMFYILHWSRPLTRARTSGILG----DGMIAPVINEGPPSSQITDDLKPNAV 402 T + + + ++L R + S LG DG+ P G P ++T D+ N + Sbjct: 422 TAVDGQTNVEIHVLQGEREMAADNKS--LGTFRLDGI--PPAPRGVPQIEVTFDIDANGI 477 Query: 401 INSTQEDEQAKEVENKSVTDADTVPAQ 321 +N T D+ + ++ S+T A T+P + Sbjct: 478 LNVTARDKGTGKQQSISITGASTLPKE 504
>PP2C1_CAEEL (P49595) Probable protein phosphatase 2C F42G9.1 (EC 3.1.3.16)| (PP2C) Length = 491 Score = 32.3 bits (72), Expect = 1.3 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = -2 Query: 377 QAKEVENKSVTDADTVPAQSPAVPGSAKQQGEERYADK 264 Q++ ++KS TDA+T P+ S V G A ++ +E +DK Sbjct: 234 QSEAKKSKSETDAETAPSSSSGVDGVATEEEDEDDSDK 271
>TOM22_SCHPO (O13813) Mitochondrial import receptor subunit tom22 (Mitochondrial| 22 kDa outer membrane protein) (Translocase of outer membrane 22 kDa subunit) Length = 144 Score = 32.0 bits (71), Expect = 1.7 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -2 Query: 266 KIRDAIAPVKRSLSKLTRYQGRSVWLLAYVALVTSWPLLGSL 141 KI D LSKL ++ G+S+W+++ AL+ P + SL Sbjct: 69 KIADGAKTATTGLSKLAQFGGKSMWVISTSALLLGVPFMMSL 110
>GCP6_HUMAN (Q96RT7) Gamma-tubulin complex component 6 (GCP-6)| Length = 1819 Score = 31.2 bits (69), Expect = 2.8 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 4/73 (5%) Frame = -2 Query: 449 GPPSSQITDDLKPNAVINSTQEDEQAKEV----ENKSVTDADTVPAQSPAVPGSAKQQGE 282 GP S T+DL PN +NS QED A+ E + A+ + + G A Q Sbjct: 1370 GPGRSGDTEDLSPNWPLNS-QEDTAAQSSPGRGEEAEASAAEAQGGEQAYLAGLAGQYHL 1428 Query: 281 ERYADKIRDAIAP 243 ERY D P Sbjct: 1429 ERYPDSYESMSEP 1441
>TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 972 Score = 31.2 bits (69), Expect = 2.8 Identities = 31/125 (24%), Positives = 41/125 (32%), Gaps = 4/125 (3%) Frame = -1 Query: 576 SSYMHRQKAEDHV----LHSSLESSIDKSPYVRHPWRRNDSPGHKRRPPFQPDHR*SETK 409 SS HR K ++ H S SS K + S GH +R + + Sbjct: 90 SSSKHRDKDKERDGSSNSHRSGSSSSHKDKDGSSSSKHKSSSGHHKRSS-------KDKE 142 Query: 408 RRDKQHTRR*TSQGSGEQERHGCRHSARSKPCSSRVRKAAXXXXXXXXXXXXXXXRQEIL 229 RRDK R GS RH S+R K SS K++ Sbjct: 143 RRDKDKDR-----GSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHSSSRHSSSSS 197 Query: 228 EQAHP 214 + HP Sbjct: 198 SKDHP 202
>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4 kinase) Length = 1007 Score = 30.8 bits (68), Expect = 3.7 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Frame = -2 Query: 467 APVINEGPPSSQITDDLKPNAVINSTQEDEQAKEVENKSV---TDADTVPAQSPAVPGSA 297 +P+INE + P + +D +++ E KS TD + P +SP+ S+ Sbjct: 277 SPIINESRSRDRGKKSRSP-VDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASS 335 Query: 296 KQQGEERYADKIRDAIAPVKRSLSKLTRYQGR 201 G+E + R +P +RSLS R + R Sbjct: 336 ---GKENRSPSRRPGRSPKRRSLSPKPRDKSR 364
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 30.8 bits (68), Expect = 3.7 Identities = 26/87 (29%), Positives = 34/87 (39%) Frame = -1 Query: 588 ALHDSSYMHRQKAEDHVLHSSLESSIDKSPYVRHPWRRNDSPGHKRRPPFQPDHR*SETK 409 +L D S+ + DH LHS SS S Y H S ++ +Q DHR S + Sbjct: 1622 SLKDRSHSDHRSHSDHRLHSDHRSS---SEYTHH----KSSRDYRYHSDWQMDHRASSSG 1674 Query: 408 RRDKQHTRR*TSQGSGEQERHGCRHSA 328 R R S GS H H + Sbjct: 1675 PRSPLDQR---SYGSRSPFEHSVEHKS 1698
>C5AP_STRP3 (Q8K5Q0) C5a peptidase precursor (EC 3.4.21.-) (SCP)| Length = 1169 Score = 30.4 bits (67), Expect = 4.8 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Frame = -2 Query: 422 DLKPNAVINSTQEDEQAKEVENKSVTDADTVPAQSPAV-PGSAKQQGEERYADKIRDAIA 246 D+K N V T EQA EV ++ + + S P EE ADK D +A Sbjct: 28 DIKANTVTEDTPATEQAVEVPQQTAVSEEAPSSSSKETNPPQTPDDAEETVADKAND-LA 86 Query: 245 P 243 P Sbjct: 87 P 87
>SC10A_RAT (Q62968) Sodium channel protein type 10 alpha subunit (Sodium channel| protein type X alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.8) (Peripheral nerve sodium channel 3) (Sensory neuron sodium channel) Length = 1956 Score = 30.4 bits (67), Expect = 4.8 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Frame = -1 Query: 558 QKAEDHVLH---SSLESSIDKSPYVRHPWRRNDSP 463 QK E+H +S+ SS D +PY+ W+R DSP Sbjct: 1038 QKCENHQAARSPASMMSSEDLAPYLGESWKRKDSP 1072
>COML_NEIMB (Q9K0B1) Competence lipoprotein comL precursor| Length = 267 Score = 30.4 bits (67), Expect = 4.8 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = -1 Query: 525 LESSIDKSPYVRHPWRRNDSP 463 LE++ KSP+++ PWR +D P Sbjct: 241 LETNFPKSPFLKQPWRSDDMP 261
>TTKA_DROME (P42282) Protein tramtrack, alpha isoform (Tramtrack p88)| (Repressor protein fushi tarazu) Length = 813 Score = 30.0 bits (66), Expect = 6.3 Identities = 14/34 (41%), Positives = 24/34 (70%) Frame = -2 Query: 452 EGPPSSQITDDLKPNAVINSTQEDEQAKEVENKS 351 E PP+++IT + PNA +N+ +EQ+KE+ K+ Sbjct: 399 EVPPATRITGAVTPNAALNA---EEQSKEMPKKN 429
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 30.0 bits (66), Expect = 6.3 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 3/105 (2%) Frame = -2 Query: 506 RARTSGILGDGMIAPVINEGPPSSQITDDLKPNAVINSTQEDEQAKEVENKSVT---DAD 336 ++ G + D +P++NE S + K + +D +++ E KS D + Sbjct: 265 KSEEKGKIKDRKKSPIVNER--SRDRSKKSKSPVDLRDKSKDRRSRSKERKSKRSEIDKE 322 Query: 335 TVPAQSPAVPGSAKQQGEERYADKIRDAIAPVKRSLSKLTRYQGR 201 P +SP+ S+ G+E + R +P +RSLS R + R Sbjct: 323 KKPIKSPSKDASS---GKENRSPSRRPGRSPKRRSLSPKLRDKSR 364
>GAGB1_HUMAN (O75459) G antigen family B 1 protein (Prostate-associated gene 1| protein) (PAGE-1) (GAGE-9) (AL5) Length = 146 Score = 30.0 bits (66), Expect = 6.3 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%) Frame = -2 Query: 416 KPNAVINSTQE--DEQAKEVENKSVTDADTVPAQSPAVPGSAKQQGEERYAD 267 +P + S++E DEQ EVE+ + + D+ PA+ G++ QG+E AD Sbjct: 12 RPMIYVESSEESSDEQPDEVESPTQSQ-DSTPAEEREDEGASAAQGQEPEAD 62
>CD2L5_HUMAN (Q14004) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)| (CDC2-related protein kinase 5) (Cholinesterase-related cell division controller) Length = 1512 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Frame = -1 Query: 561 RQKAEDHVLHSSLE--SSIDKSPYVRHPWRRNDSPGHKRRPPFQPDHR*S-ETKRRDKQH 391 R+++ + HSS E + SPY WRR+ R P+ P R S +++ R Sbjct: 364 RRRSPSYSRHSSYERGGDVSPSPYSSSSWRRS-------RSPYSPVLRRSGKSRSRSPYS 416 Query: 390 TRR*TSQGSGEQERHGCRHSARS 322 +R S+ R RHS+ S Sbjct: 417 SRHSRSRSRHRLSRSRSRHSSIS 439
>NQO3_THET8 (Q56223) NADH-quinone oxidoreductase subunit 3 (EC 1.6.99.5) (NADH| dehydrogenase I chain 3) (NDH-1 subunit 3) Length = 783 Score = 30.0 bits (66), Expect = 6.3 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%) Frame = +3 Query: 18 HSLLXLY-HMILPTLLFFAKKHHMILLSGQRISGLFP---EHHESQGAKQ 155 H L Y H++LP F+ K+ H++ L G R+ L P E+ E++GA Q Sbjct: 591 HPLAERYAHVVLPAPTFYEKRGHLVNLEG-RVLPLSPAPIENGEAEGALQ 639
>CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)| (CDC2-related protein kinase 5) Length = 1511 Score = 30.0 bits (66), Expect = 6.3 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Frame = -1 Query: 561 RQKAEDHVLHSSLE--SSIDKSPYVRHPWRRNDSPGHKRRPPFQPD-HR*SETKRRDKQH 391 R+++ + HSS E + SPY WRR+ R P+ P R ++++ R Sbjct: 365 RRRSPSYSRHSSYERGGDVSPSPYSSSSWRRS-------RSPYSPVLRRSAKSRSRSPYS 417 Query: 390 TRR*TSQGSGEQERHGCRHSARS 322 +R S+ R RHS+ S Sbjct: 418 SRHSRSRSRHRLSRSRSRHSSIS 440
>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament| protein) (Neurofilament heavy polypeptide) (NF-H) Length = 1072 Score = 29.6 bits (65), Expect = 8.2 Identities = 14/52 (26%), Positives = 28/52 (53%) Frame = -2 Query: 437 SQITDDLKPNAVINSTQEDEQAKEVENKSVTDADTVPAQSPAVPGSAKQQGE 282 S + +++KP A + S ++ + + E KS A T+ +SP AK++ + Sbjct: 788 SPVKEEIKPPAEVKSPEKAKSPMKEEAKSPEKAKTLDVKSPEAKTPAKEEAK 839
>DNAK_STAS1 (Q49Y22) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 614 Score = 29.6 bits (65), Expect = 8.2 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 2/106 (1%) Frame = -2 Query: 569 TCIGKRRKIMFYILHWSRPLTRARTSGILGDGMIA--PVINEGPPSSQITDDLKPNAVIN 396 T + + ++L RP+ A + LG + P G P ++T D+ N ++N Sbjct: 398 TAADNQPAVDIHVLQGERPM--AADNKTLGRFQLTDIPAAPRGVPQIEVTFDIDKNGIVN 455 Query: 395 STQEDEQAKEVENKSVTDADTVPAQSPAVPGSAKQQGEERYADKIR 258 T +D + +N ++ + + + K E ADK R Sbjct: 456 VTAKDLGTNKEQNITIQSSSAL--SDDEIDRMVKDAEENAEADKKR 499
>DNAK_STAES (Q8CP17) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 609 Score = 29.6 bits (65), Expect = 8.2 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 2/106 (1%) Frame = -2 Query: 569 TCIGKRRKIMFYILHWSRPLTRARTSGILGDGMIA--PVINEGPPSSQITDDLKPNAVIN 396 T + + ++L RP+ A + LG + P G P ++T D+ N ++N Sbjct: 398 TAADNQPAVDIHVLQGERPM--ASDNKTLGRFQLTDIPPAPRGVPQIEVTFDIDKNGIVN 455 Query: 395 STQEDEQAKEVENKSVTDADTVPAQSPAVPGSAKQQGEERYADKIR 258 T +D + +N ++ + ++ + + K E ADK R Sbjct: 456 VTAKDLGTNKEQNITIQSSSSLSDEE--IDRMVKDAEENAEADKKR 499
>DNAK_STAEQ (Q5HNW6) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 609 Score = 29.6 bits (65), Expect = 8.2 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 2/106 (1%) Frame = -2 Query: 569 TCIGKRRKIMFYILHWSRPLTRARTSGILGDGMIA--PVINEGPPSSQITDDLKPNAVIN 396 T + + ++L RP+ A + LG + P G P ++T D+ N ++N Sbjct: 398 TAADNQPAVDIHVLQGERPM--ASDNKTLGRFQLTDIPPAPRGVPQIEVTFDIDKNGIVN 455 Query: 395 STQEDEQAKEVENKSVTDADTVPAQSPAVPGSAKQQGEERYADKIR 258 T +D + +N ++ + ++ + + K E ADK R Sbjct: 456 VTAKDLGTNKEQNITIQSSSSLSDEE--IDRMVKDAEENAEADKKR 499
>DDIT3_MOUSE (P35639) DNA damage-inducible transcript 3 (DDIT-3) (Growth arrest| and DNA-damage-inducible protein GADD153) (C/EBP-homologous protein) (CHOP) Length = 168 Score = 29.6 bits (65), Expect = 8.2 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 4/101 (3%) Frame = -2 Query: 503 ARTSGILGDGMIAPVINEGPPSSQITDDLKPNAVINSTQEDEQAKEVENKSVTDADTVPA 324 ++T L +A + E P+ P + +S Q +E E + T Sbjct: 49 SKTFTTLDPASLAWLTEEPGPTEVTRTSQSPRSPDSSQSSMAQEEEEEEQGRTRKRKQSG 108 Query: 323 QSPAVPGSA----KQQGEERYADKIRDAIAPVKRSLSKLTR 213 Q PA PG K+Q ER ++ + +K+ + +LTR Sbjct: 109 QCPARPGKQRMKEKEQENERKVAQLAEENERLKQEIERLTR 149
>ATG18_PICPA (Q8X1F5) Autophagy-related protein 18 (Glucose-induced selective| autophagy protein 12) Length = 543 Score = 29.6 bits (65), Expect = 8.2 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 8/91 (8%) Frame = -2 Query: 443 PSSQITDDLKPNA---VINSTQEDEQAKE-----VENKSVTDADTVPAQSPAVPGSAKQQ 288 PSS + D P+ V N +D++ +E + + + TVP + + Sbjct: 337 PSSLVDSDSDPDVDELVENDNSDDDELEEDIDDELAEERFNSSLTVPRRVSSTTSLGSYG 396 Query: 287 GEERYADKIRDAIAPVKRSLSKLTRYQGRSV 195 +E DKI + +RS++++ R +S+ Sbjct: 397 SQESIGDKIEPHVDSARRSVARMIRRTSQSL 427 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,266,709 Number of Sequences: 219361 Number of extensions: 2339999 Number of successful extensions: 7948 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 7543 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7941 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
