ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4o14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470091.1| Oryza sativa (japonica cultivar-group), mRNA 80 6e-12
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 80 6e-12
3gb|AC139172.2| Oryza sativa chromosome 3 BAC OSJNBb0042K11 genom... 80 6e-12
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
5gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom... 80 6e-12
6dbj|AK065405.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
7gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, com... 42 1.3
8gb|AC113190.8| Homo sapiens chromosome 15, clone RP11-186H10, co... 42 1.3
9gb|AC026742.3| Homo sapiens chromosome 5 clone CTD-3103E19, comp... 42 1.3
10gb|AC093633.3| Homo sapiens BAC clone RP11-157M22 from 2, comple... 42 1.3
11gb|AC153357.4| Mus musculus BAC clone RP24-124N8 from chromosome... 40 5.1
12emb|AL360182.15| Human DNA sequence from clone RP11-549L6 on chr... 40 5.1
13gb|AC096677.2| Homo sapiens chromosome 1 clone RP11-134G8, compl... 40 5.1
14gb|AC092116.3| Homo sapiens chromosome 16 clone CTD-2133M23, com... 40 5.1
15gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, com... 40 5.1
16gb|AC160568.2| Pan troglodytes BAC clone CH251-293A11 from chrom... 40 5.1
17emb|AJ251973.1|HSA251973 Homo sapiens partial steerin-1 gene 40 5.1
18gb|AC140381.3| Mus musculus BAC clone RP23-176M4 from 10, comple... 40 5.1 
>ref|XM_470091.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1344

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 80/89 (89%), Gaps = 7/89 (7%)
 Strand = Plus / Minus

                                                                        
Query: 122  tgtcatggagataacctaccatcatagcaccacattactagggttaacagtcaattaaca 181
            |||||||||||||||||||   |||||||||||| ||||||||||||||||||| |||||
Sbjct: 1195 tgtcatggagataacctac---catagcaccaca-tactagggttaacagtcaa-taaca 1141

                                         
Query: 182  aataaagcgaatgttct--agaccttaca 208
            |||||| | ||||||||  ||||||||||
Sbjct: 1140 aataaaacaaatgttcttgagaccttaca 1112
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 80/89 (89%), Gaps = 7/89 (7%)
 Strand = Plus / Minus

                                                                            
Query: 122      tgtcatggagataacctaccatcatagcaccacattactagggttaacagtcaattaaca 181
                |||||||||||||||||||   |||||||||||| ||||||||||||||||||| |||||
Sbjct: 33886709 tgtcatggagataacctac---catagcaccaca-tactagggttaacagtcaa-taaca 33886655

                                             
Query: 182      aataaagcgaatgttct--agaccttaca 208
                |||||| | ||||||||  ||||||||||
Sbjct: 33886654 aataaaacaaatgttcttgagaccttaca 33886626
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>gb|AC139172.2| Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete
             sequence
          Length = 27024

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 80/89 (89%), Gaps = 7/89 (7%)
 Strand = Plus / Minus

                                                                         
Query: 122   tgtcatggagataacctaccatcatagcaccacattactagggttaacagtcaattaaca 181
             |||||||||||||||||||   |||||||||||| ||||||||||||||||||| |||||
Sbjct: 20911 tgtcatggagataacctac---catagcaccaca-tactagggttaacagtcaa-taaca 20857

                                          
Query: 182   aataaagcgaatgttct--agaccttaca 208
             |||||| | ||||||||  ||||||||||
Sbjct: 20856 aataaaacaaatgttcttgagaccttaca 20828
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 80/89 (89%), Gaps = 7/89 (7%)
 Strand = Plus / Minus

                                                                            
Query: 122      tgtcatggagataacctaccatcatagcaccacattactagggttaacagtcaattaaca 181
                |||||||||||||||||||   |||||||||||| ||||||||||||||||||| |||||
Sbjct: 33977181 tgtcatggagataacctac---catagcaccaca-tactagggttaacagtcaa-taaca 33977127

                                             
Query: 182      aataaagcgaatgttct--agaccttaca 208
                |||||| | ||||||||  ||||||||||
Sbjct: 33977126 aataaaacaaatgttcttgagaccttaca 33977098
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>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete
              sequence
          Length = 172337

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 80/89 (89%), Gaps = 7/89 (7%)
 Strand = Plus / Plus

                                                                          
Query: 122    tgtcatggagataacctaccatcatagcaccacattactagggttaacagtcaattaaca 181
              |||||||||||||||||||   |||||||||||| ||||||||||||||||||| |||||
Sbjct: 170982 tgtcatggagataacctac---catagcaccaca-tactagggttaacagtcaa-taaca 171036

                                           
Query: 182    aataaagcgaatgttct--agaccttaca 208
              |||||| | ||||||||  ||||||||||
Sbjct: 171037 aataaaacaaatgttcttgagaccttaca 171065
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>dbj|AK065405.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013007I03, full
            insert sequence
          Length = 1521

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 80/89 (89%), Gaps = 7/89 (7%)
 Strand = Plus / Minus

                                                                        
Query: 122  tgtcatggagataacctaccatcatagcaccacattactagggttaacagtcaattaaca 181
            |||||||||||||||||||   |||||||||||| ||||||||||||||||||| |||||
Sbjct: 1377 tgtcatggagataacctac---catagcaccaca-tactagggttaacagtcaa-taaca 1323

                                         
Query: 182  aataaagcgaatgttct--agaccttaca 208
            |||||| | ||||||||  ||||||||||
Sbjct: 1322 aataaaacaaatgttcttgagaccttaca 1294
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>gb|AC073585.8| Homo sapiens chromosome 10 clone RP11-564D11, complete sequence
          Length = 197295

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 62     ctaaaagggggtgaaaaggaaaaca 86
              |||||||||||| ||||||||||||
Sbjct: 190083 ctaaaagggggtaaaaaggaaaaca 190107
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>gb|AC113190.8| Homo sapiens chromosome 15, clone RP11-186H10, complete sequence
          Length = 161765

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 70     gggtgaaaaggaaaacatgaaagct 94
              |||||||||||||||||| ||||||
Sbjct: 130993 gggtgaaaaggaaaacataaaagct 130969
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>gb|AC026742.3| Homo sapiens chromosome 5 clone CTD-3103E19, complete sequence
          Length = 149710

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 165  ttaacagtcaattaacaaata 185
            |||||||||||||||||||||
Sbjct: 2017 ttaacagtcaattaacaaata 1997
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>gb|AC093633.3| Homo sapiens BAC clone RP11-157M22 from 2, complete sequence
          Length = 173066

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   ttaacagtcaattaacaaata 185
             |||||||||||||||||||||
Sbjct: 11935 ttaacagtcaattaacaaata 11915
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>gb|AC153357.4| Mus musculus BAC clone RP24-124N8 from chromosome 10, complete sequence
          Length = 189789

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     gaaaaggaaaacatgaaagc 93
              ||||||||||||||||||||
Sbjct: 163584 gaaaaggaaaacatgaaagc 163603
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>emb|AL360182.15| Human DNA sequence from clone RP11-549L6 on chromosome 10 Contains the
             MXI1 gene for MAX interacting protein 1 (MAD2,MXD2), a
             ribosomal protein L21 (RPL21) pseudogene, a novel gene,
             the SPF30 gene for splicing factor 30, survival of motor
             neuron-related (SMNR) and three CpG islands, complete
             sequence
          Length = 145256

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    gaaaaggaaaacatgaaagc 93
             ||||||||||||||||||||
Sbjct: 20943 gaaaaggaaaacatgaaagc 20962
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>gb|AC096677.2| Homo sapiens chromosome 1 clone RP11-134G8, complete sequence
          Length = 223735

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 274    cattgtcccagaggtttctccttg 297
              |||||||||||||| |||||||||
Sbjct: 197181 cattgtcccagagggttctccttg 197158
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>gb|AC092116.3| Homo sapiens chromosome 16 clone CTD-2133M23, complete sequence
          Length = 61373

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  taacagtcaattaacaaata 185
            ||||||||||||||||||||
Sbjct: 4613 taacagtcaattaacaaata 4594
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>gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, complete sequence
          Length = 181955

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    taacagtcaattaacaaata 185
              ||||||||||||||||||||
Sbjct: 168139 taacagtcaattaacaaata 168120
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>gb|AC160568.2| Pan troglodytes BAC clone CH251-293A11 from chromosome unknown, complete
              sequence
          Length = 159393

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    taacagtcaattaacaaata 185
              ||||||||||||||||||||
Sbjct: 113088 taacagtcaattaacaaata 113069
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>emb|AJ251973.1|HSA251973 Homo sapiens partial steerin-1 gene
          Length = 200033

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 274   cattgtcccagaggtttctccttg 297
             |||||||||||||| |||||||||
Sbjct: 35430 cattgtcccagagggttctccttg 35407
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>gb|AC140381.3| Mus musculus BAC clone RP23-176M4 from 10, complete sequence
          Length = 223470

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     gaaaaggaaaacatgaaagc 93
              ||||||||||||||||||||
Sbjct: 100807 gaaaaggaaaacatgaaagc 100826


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,691,080
Number of Sequences: 3902068
Number of extensions: 2691080
Number of successful extensions: 43978
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43921
Number of HSP's gapped (non-prelim): 45
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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