>gb|BT016814.1| Zea mays clone Contig647 mRNA sequence
          Length = 1009

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 103/123 (83%)
 Strand = Plus / Minus

                                                                       
Query: 266 ggagaggcgcctgcactggctgctcgcgctgatcctggtggactgcatcattgtggggag 325
           ||||| ||||||||||||||||||||||||||||||| ||| |||    |  ||||| ||
Sbjct: 673 ggagatgcgcctgcactggctgctcgcgctgatcctgttgggctgtgctagcgtgggcag 614

                                                                       
Query: 326 gatagggaaggacttgggccggatgttcaggggcgagaacagcatcttcccgcttgagtc 385
            |  ||||||  ||||||||  ||||| ||| |||||||||||||||||||||| |||||
Sbjct: 613 aaccgggaagtgcttgggcccaatgttgaggcgcgagaacagcatcttcccgctggagtc 554

              
Query: 386 gtg 388
           |||
Sbjct: 553 gtg 551

>gb|AY107697.1| Zea mays PCO107081 mRNA sequence
          Length = 1041

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 103/123 (83%)
 Strand = Plus / Minus

                                                                       
Query: 266 ggagaggcgcctgcactggctgctcgcgctgatcctggtggactgcatcattgtggggag 325
           ||||| ||||||||||||||||||||||||||||||| ||| |||    |  ||||| ||
Sbjct: 698 ggagaagcgcctgcactggctgctcgcgctgatcctgttgggctgtgctagcgtgggcag 639

                                                                       
Query: 326 gatagggaaggacttgggccggatgttcaggggcgagaacagcatcttcccgcttgagtc 385
            |  ||||||  ||||||||  ||||| ||| |||||||||||||||||||||| |||||
Sbjct: 638 aaccgggaagtgcttgggcccaatgttgaggcgcgagaacagcatcttcccgctggagtc 579

              
Query: 386 gtg 388
           |||
Sbjct: 578 gtg 576



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 177 ccttacaccattagctgggcaatgtccttccggaagacgccct 219
           ||||||||||| ||||| ||||||||||  |||||||| ||||
Sbjct: 781 ccttacaccatcagctgtgcaatgtcctcgcggaagacaccct 739

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                           
Query: 273     cgcctgcactggctgctcgcgctgatcctggtggactgcatcattgtggggaggataggg 332
               ||||| ||||||||||| || || || ||||||| |||||||||||| || || | ||||
Sbjct: 1449046 cgcctacactggctgctagcactaattctggtgggctgcatcattgtcggtagaacaggg 1448987

                                      
Query: 333     aaggacttgggccggatgttcag 355
               ||||||||||| || ||||||||
Sbjct: 1448986 aaggacttgggtcgaatgttcag 1448964

>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0482F12
          Length = 147735

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                          
Query: 273    cgcctgcactggctgctcgcgctgatcctggtggactgcatcattgtggggaggataggg 332
              ||||| ||||||||||| || || || ||||||| |||||||||||| || || | ||||
Sbjct: 130318 cgcctacactggctgctagcactaattctggtgggctgcatcattgtcggtagaacaggg 130259

                                     
Query: 333    aaggacttgggccggatgttcag 355
              ||||||||||| || ||||||||
Sbjct: 130258 aaggacttgggtcgaatgttcag 130236

>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                         
Query: 273   cgcctgcactggctgctcgcgctgatcctggtggactgcatcattgtggggaggataggg 332
             ||||| ||||||||||| || || || ||||||| |||||||||||| || || | ||||
Sbjct: 12467 cgcctacactggctgctagcactaattctggtgggctgcatcattgtcggtagaacaggg 12408

                                    
Query: 333   aaggacttgggccggatgttcag 355
             ||||||||||| || ||||||||
Sbjct: 12407 aaggacttgggtcgaatgttcag 12385

>dbj|AK102783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107K13, full
            insert sequence
          Length = 2448

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                        
Query: 273  cgcctgcactggctgctcgcgctgatcctggtggactgcatcattgtggggaggataggg 332
            ||||| ||||||||||| || || || ||||||| |||||||||||| || || | ||||
Sbjct: 1909 cgcctacactggctgctagcactaattctggtgggctgcatcattgtcggtagaacaggg 1850

                                   
Query: 333  aaggacttgggccggatgttcag 355
            ||||||||||| || ||||||||
Sbjct: 1849 aaggacttgggtcgaatgttcag 1827

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 284     gctgctcgcgctgatcctggtg 305
               ||||||||||||||||||||||
Sbjct: 3170523 gctgctcgcgctgatcctggtg 3170544

>emb|AL929226.7| Mouse DNA sequence from clone RP23-368N20 on chromosome X, complete
            sequence
          Length = 79248

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 112  ccaaattccagtcaagtaaaca 133
            ||||||||||||||||||||||
Sbjct: 3419 ccaaattccagtcaagtaaaca 3398

>emb|AL929461.3| Zebrafish DNA sequence from clone BUSM1-180O5 in linkage group 7
             Contains two novel genes similar to cdh1 (E-cadherin) and
             a novel gene for a DNA polymerase, complete sequence
          Length = 58622

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     tatgatgatttgtngaaaatgtat 27
             ||||||||||||| ||||||||||
Sbjct: 38331 tatgatgatttgttgaaaatgtat 38308

>emb|BX005388.20| Zebrafish DNA sequence from clone DKEY-164M7, complete sequence
          Length = 220740

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 4      tatgatgatttgtngaaaatgtat 27
              ||||||||||||| ||||||||||
Sbjct: 178856 tatgatgatttgttgaaaatgtat 178879

>emb|BX294377.10| Zebrafish DNA sequence from clone DKEY-21K19 in linkage group 8, complete
              sequence
          Length = 197191

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 4      tatgatgatttgtngaaaatgtat 27
              ||||||||||||| ||||||||||
Sbjct: 103063 tatgatgatttgttgaaaatgtat 103086

>emb|BX255879.6| Zebrafish DNA sequence from clone CH211-232P17 in linkage group 18,
             complete sequence
          Length = 173755

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     tatgatgatttgtngaaaatgtat 27
             ||||||||||||| ||||||||||
Sbjct: 76316 tatgatgatttgttgaaaatgtat 76293

>ref|XM_566216.1| Anopheles gambiae str. PEST ENSANGP00000027604
           (ENSANGG00000006107), partial mRNA
          Length = 1869

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 359 cgagaacagcatcttcccgct 379
           |||||||||||||||||||||
Sbjct: 270 cgagaacagcatcttcccgct 290

>ref|XM_310950.2| Anopheles gambiae str. PEST ENSANGP00000008096
           (ENSANGG00000006107), partial mRNA
          Length = 1854

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 359 cgagaacagcatcttcccgct 379
           |||||||||||||||||||||
Sbjct: 288 cgagaacagcatcttcccgct 308

>dbj|AP001157.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-658F2, complete
              sequence
          Length = 200458

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 224    catgtccttcctcctggcggt 244
              |||||||||||||||||||||
Sbjct: 113494 catgtccttcctcctggcggt 113474

>gb|AY596295.1| Haloarcula marismortui ATCC 43049 plasmid pNG600, complete sequence
          Length = 155300

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 204    ttccggaagacgccctccatcatgtcct 231
              |||||||||||| ||||||||| |||||
Sbjct: 112774 ttccggaagacgtcctccatcaagtcct 112801

>gb|AC135104.22| Mus musculus strain C57BL/6J clone rp23-206l6, complete sequence
          Length = 198294

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 217    cctccatcatgtccttcctcctgg 240
              ||||||||||| ||||||||||||
Sbjct: 108677 cctccatcatggccttcctcctgg 108700

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 274     gcctgcactggctgctcgcg 293
               ||||||||||||||||||||
Sbjct: 3012542 gcctgcactggctgctcgcg 3012561

>gb|AC011825.13| Homo sapiens chromosome 18, clone RP11-53I6, complete sequence
          Length = 176222

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   ccgggctgccgcctggcggg 480
             ||||||||||||||||||||
Sbjct: 51611 ccgggctgccgcctggcggg 51630

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 289     tcgcgctgatcctggtggac 308
               ||||||||||||||||||||
Sbjct: 2617638 tcgcgctgatcctggtggac 2617619

>dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-732G1, complete
             sequences
          Length = 195800

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   gtcaagtaaacagtgttcaa 141
             ||||||||||||||||||||
Sbjct: 89310 gtcaagtaaacagtgttcaa 89329

>gb|AY762621.1| Rhizoscyphus ericae strain UAMH 8680 18S ribosomal RNA gene,
           partial sequence
          Length = 3136

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  aaaatgtatattggccaaaa 38
           ||||||||||||||||||||
Sbjct: 983 aaaatgtatattggccaaaa 964

>emb|AL645684.16| Mouse DNA sequence from clone RP23-35E7 on chromosome 11, complete
             sequence
          Length = 122461

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 217   cctccatcatgtccttcctcctgg 240
             ||||||||||| ||||||||||||
Sbjct: 30778 cctccatcatggccttcctcctgg 30755


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,884,368
Number of Sequences: 3902068
Number of extensions: 3884368
Number of successful extensions: 65129
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64939
Number of HSP's gapped (non-prelim): 190
length of query: 494
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 472
effective length of database: 17,147,199,772
effective search space: 8093478292384
effective search space used: 8093478292384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)