>PO4F2_MOUSE (Q63934) POU domain, class 4, transcription factor 2|
           (Brain-specific homeobox/POU domain protein 3B) (Brn-3B)
           (Brn-3.2)
          Length = 411

 Score = 23.9 bits (50), Expect(2) = 5.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 30  HPYYLNKTEIIHHHHH 77
           HP  L  T   HHHHH
Sbjct: 165 HPSALAGTHHHHHHHH 180



 Score = 23.1 bits (48), Expect(2) = 5.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 63  HHHHHDPGES 92
           HHHHH P ++
Sbjct: 180 HHHHHQPHQA 189

>PO4F2_HUMAN (Q12837) POU domain, class 4, transcription factor 2|
           (Brain-specific homeobox/POU domain protein 3B) (Brn-3B)
          Length = 410

 Score = 23.9 bits (50), Expect(2) = 5.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 30  HPYYLNKTEIIHHHHH 77
           HP  L  T   HHHHH
Sbjct: 164 HPCALAGTHHHHHHHH 179



 Score = 23.1 bits (48), Expect(2) = 5.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 63  HHHHHDPGES 92
           HHHHH P ++
Sbjct: 179 HHHHHQPHQA 188

>VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C|
           subunit) (Vacuolar proton pump C subunit)
          Length = 714

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 18  QRERHPYYLNKTEIIHHHHH 77
           ++ +H ++ NK +  HHHHH
Sbjct: 122 RKHQHTHHQNKPQHYHHHHH 141

>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)|
          Length = 624

 Score = 24.6 bits (52), Expect(2) = 8.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 63  HHHHHDPG 86
           HHHHH PG
Sbjct: 529 HHHHHHPG 536



 Score = 21.6 bits (44), Expect(2) = 8.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 18  QRERHPYYLNKTEIIHHHHH 77
           QR R      +T   HHHHH
Sbjct: 496 QRRRPRSPPPRTPSCHHHHH 515


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.133    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,517,892
Number of Sequences: 219361
Number of extensions: 223157
Number of successful extensions: 964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 80,573,946
effective HSP length: 20
effective length of database: 76,186,726
effective search space used: 1828481424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)