ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4o05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1G3PB_ARATH (P25857) Glyceraldehyde-3-phosphate dehydrogenase B, ... 37 0.013
2G3PB_PEA (P12859) Glyceraldehyde-3-phosphate dehydrogenase B, ch... 34 0.11
3G3PB_SPIOL (P12860) Glyceraldehyde-3-phosphate dehydrogenase B, ... 32 0.42
4HYFJ_ECOLI (P77453) Hydrogenase-4 component J (EC 1.-.-.-) 29 3.6
5LIPA_BACTN (Q8A029) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid sy... 28 4.7
6MYSN_ACACA (P05659) Myosin-2 heavy chain, non muscle (Myosin II ... 28 8.0

>G3PB_ARATH (P25857) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast|
           precursor (EC 1.2.1.13) (NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B)
          Length = 447

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = -3

Query: 271 DPLEDYCKTDPNAVECKVFD 212
           DPLED+CKT+P   ECKV+D
Sbjct: 428 DPLEDFCKTNPADEECKVYD 447



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>G3PB_PEA (P12859) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast|
           precursor (EC 1.2.1.13) (NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B)
          Length = 451

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -3

Query: 271 DPLEDYCKTDPNAVECKVFD 212
           DPLED+C+T+P   ECKV++
Sbjct: 432 DPLEDFCETNPADEECKVYE 451



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>G3PB_SPIOL (P12860) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast|
           precursor (EC 1.2.1.13) (NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B)
          Length = 451

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 271 DPLEDYCKTDPNAVECKVFD 212
           DPLED+CK +P   ECK+++
Sbjct: 432 DPLEDFCKDNPADEECKLYE 451



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>HYFJ_ECOLI (P77453) Hydrogenase-4 component J (EC 1.-.-.-)|
          Length = 137

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = -3

Query: 184 WLDRSRLIRKRNE----ATTVHYYRLSIAYNMDLLDCVSFVSRL-LAELAAWCSIYQTGF 20
           W  R + +   +E    ++ V YY L+I +++ ++DC++   R  L E   W ++ +   
Sbjct: 11  WTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVEEEQ 70

Query: 19  GQNKL 5
            + K+
Sbjct: 71  ARRKM 75



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>LIPA_BACTN (Q8A029) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)|
           (Lipoate synthase) (Lipoyl-acyl-carrier protein
           synthase) (Sulfur insertion protein lipA) (Lip-syn)
          Length = 282

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 214 DE*TELGAGCWLDRSRLIRKRNEATTVHYYRLSIAYNMDLLDCV 83
           D+  +LGAG W    R I++ N  TT+          M+L+D V
Sbjct: 108 DDLPDLGAGHWAHTIREIKRLNPQTTIEVLIPDFQGRMELVDLV 151



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>MYSN_ACACA (P05659) Myosin-2 heavy chain, non muscle (Myosin II heavy chain,|
           non muscle)
          Length = 1509

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 225 ARCSTSERSSELVAGLTGRG*SENATKQLQYIIIV 121
           A  +T +  S L+ G +G G +EN  K +QY+  +
Sbjct: 168 AMLNTRQNQSMLITGESGAGKTENTKKVIQYLTAI 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,294,606
Number of Sequences: 219361
Number of extensions: 477800
Number of successful extensions: 1090
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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