ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4o04 |
|---|---|
| Clone Library Name | barley_pub |
>RBS1_WHEAT (P00871) Ribulose bisphosphate carboxylase small chain PWS4.3,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit PWS4.3) Length = 174 Score = 45.1 bits (105), Expect = 5e-05 Identities = 19/19 (100%), Positives = 19/19 (100%) Frame = -2 Query: 201 QCVSFIAFRPPGCEESGKA 145 QCVSFIAFRPPGCEESGKA Sbjct: 156 QCVSFIAFRPPGCEESGKA 174
>RBS2_WHEAT (P26667) Ribulose bisphosphate carboxylase small chain PW9,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit PW9) Length = 175 Score = 45.1 bits (105), Expect = 5e-05 Identities = 19/19 (100%), Positives = 19/19 (100%) Frame = -2 Query: 201 QCVSFIAFRPPGCEESGKA 145 QCVSFIAFRPPGCEESGKA Sbjct: 157 QCVSFIAFRPPGCEESGKA 175
>RBS3_WHEAT (P07398) Ribulose bisphosphate carboxylase small chain clone 512| (EC 4.1.1.39) (RuBisCO small subunit) (Fragment) Length = 113 Score = 43.9 bits (102), Expect = 1e-04 Identities = 18/19 (94%), Positives = 19/19 (100%) Frame = -2 Query: 201 QCVSFIAFRPPGCEESGKA 145 QCVSFIAF+PPGCEESGKA Sbjct: 95 QCVSFIAFKPPGCEESGKA 113
>RBS_HORVU (Q40004) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 174 Score = 42.7 bits (99), Expect = 3e-04 Identities = 17/19 (89%), Positives = 19/19 (100%) Frame = -2 Query: 201 QCVSFIAFRPPGCEESGKA 145 QCVSFIAF+PPGC+ESGKA Sbjct: 156 QCVSFIAFKPPGCQESGKA 174
>RBS_AEGTA (Q38793) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 175 Score = 37.0 bits (84), Expect = 0.014 Identities = 16/19 (84%), Positives = 17/19 (89%) Frame = -2 Query: 201 QCVSFIAFRPPGCEESGKA 145 Q VSFIA +PPGCEESGKA Sbjct: 157 QSVSFIASKPPGCEESGKA 175
>RBS3_ORYSA (P18567) Ribulose bisphosphate carboxylase small chain C,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit C) Length = 175 Score = 35.0 bits (79), Expect = 0.054 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -2 Query: 201 QCVSFIAFRPPGCEESG 151 Q +SFIA++PPGCEESG Sbjct: 157 QLISFIAYKPPGCEESG 173
>RBS2_ORYSA (P18566) Ribulose bisphosphate carboxylase small chain A,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit A) Length = 175 Score = 35.0 bits (79), Expect = 0.054 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -2 Query: 201 QCVSFIAFRPPGCEESG 151 Q +SFIA++PPGCEESG Sbjct: 157 QLISFIAYKPPGCEESG 173
>RBS3_AMAHP (Q9XGX4) Ribulose bisphosphate carboxylase small chain 3,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3) Length = 180 Score = 29.3 bits (64), Expect = 3.0 Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = -2 Query: 201 QCVSFIAFRPPG 166 QCVSFIAF+PPG Sbjct: 168 QCVSFIAFKPPG 179
>RBS_MAIZE (P05348) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 170 Score = 28.5 bits (62), Expect = 5.0 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = -2 Query: 201 QCVSFIAFRPPGCE 160 QCVSFIA++PPG + Sbjct: 157 QCVSFIAYKPPGSD 170
>RBS2_PETHY (P04715) Ribulose bisphosphate carboxylase small chain SSU11A,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit SSU11A) Length = 180 Score = 27.7 bits (60), Expect = 8.6 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = -2 Query: 201 QCVSFIAFRPPG 166 QC+SFIA++PPG Sbjct: 168 QCISFIAYKPPG 179
>RBS1_SOYBN (P00865) Ribulose bisphosphate carboxylase small chain 1,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1) Length = 178 Score = 27.7 bits (60), Expect = 8.6 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = -2 Query: 201 QCVSFIAFRPPG 166 QC+SFIA++PPG Sbjct: 166 QCISFIAYKPPG 177
>RBS1_PETHY (P04714) Ribulose bisphosphate carboxylase small chain SSU8,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit SSU8) Length = 180 Score = 27.7 bits (60), Expect = 8.6 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = -2 Query: 201 QCVSFIAFRPPG 166 QC+SFIA++PPG Sbjct: 168 QCISFIAYKPPG 179 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,543,875 Number of Sequences: 219361 Number of extensions: 373988 Number of successful extensions: 809 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 799 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 809 length of database: 80,573,946 effective HSP length: 42 effective length of database: 71,360,784 effective search space used: 1712658816 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
