ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4o01 |
|---|---|
| Clone Library Name | barley_pub |
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 205 bits (521), Expect = 1e-52 Identities = 99/134 (73%), Positives = 118/134 (88%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G MS+++EAE AVE F+RYD+NGRLLTVNKAAPRG+R ER PR +FR+YVGNLPW Sbjct: 194 GFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPW 253 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 VD+ RL +LFSEHGKVV+ARVVYDR+TGRSRGFGFVTM+ +EL++AI+ALDGQ+LEGR Sbjct: 254 DVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGR 313 Query: 251 ALRVNVAEERPPRR 210 A+RVNVAEERPPRR Sbjct: 314 AIRVNVAEERPPRR 327 Score = 71.2 bits (173), Expect = 2e-12 Identities = 36/82 (43%), Positives = 51/82 (62%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +++VGNL + V+ L LF + G V A V+Y+R+T +SRGFGFVTM+S +E + A+ Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 278 LDGQSLEGRALRVNVAEERPPR 213 + L GR L VN A R R Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSR 232
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 203 bits (517), Expect = 3e-52 Identities = 100/133 (75%), Positives = 114/133 (85%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G MST+EEAEKAVEM++RYDVNGRLLTVNKAA RG R ERPPR S+RIYVGN+PW Sbjct: 180 GFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPW 239 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +DD+RL +LFSEHGKVV ARVVYDR+TGRSRGFGFVTMAS+ E+ DAIA LDGQSL+GR Sbjct: 240 GIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGR 299 Query: 251 ALRVNVAEERPPR 213 +RVNVAE+R R Sbjct: 300 TIRVNVAEDRSRR 312 Score = 83.6 bits (205), Expect = 4e-16 Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 6/101 (5%) Frame = -2 Query: 491 ERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMA 312 + PP D+ +++VGNLP+ VD L LF + G V A V+Y+RDT +SRGFGFVTM+ Sbjct: 130 QEPPEDA----KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMS 185 Query: 311 SQEELDDAIAALDGQSLEGRALRVNVA------EERPPRRF 207 + EE + A+ + + GR L VN A ERPPR F Sbjct: 186 TVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTF 226
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 192 bits (489), Expect = 5e-49 Identities = 90/133 (67%), Positives = 114/133 (85%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G MST+EEA+KAVE++ +YD+NGRLLTVNKAAPRG+R ER PR ++RIYVGN+PW Sbjct: 141 GFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPW 200 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +DD+RL ++FSEHGKVV ARVV+DR++GRSRGFGFVTM+S+ E+ +AIA LDGQ+L+GR Sbjct: 201 DIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGR 260 Query: 251 ALRVNVAEERPPR 213 +RVN AEERP R Sbjct: 261 TIRVNAAEERPRR 273 Score = 80.1 bits (196), Expect = 5e-15 Identities = 42/90 (46%), Positives = 55/90 (61%), Gaps = 6/90 (6%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +++VGNLP+ +D L +LF + G V A V+Y+R+T RSRGFGFVTM++ EE D A+ Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157 Query: 278 LDGQSLEGRALRVNVA------EERPPRRF 207 L GR L VN A ER PR F Sbjct: 158 YSQYDLNGRLLTVNKAAPRGSRPERAPRTF 187
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 189 bits (479), Expect = 7e-48 Identities = 95/135 (70%), Positives = 111/135 (82%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G MST+EEAEKAVE+ + YD++GR LTVNKAAPRG+ P D S R+YVGNLPW Sbjct: 99 GFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPW 158 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 VD SRL +LFSEHGKVV ARVV DR+TGRSRGFGFVTM+S+ E++DAIAALDGQ+L+GR Sbjct: 159 DVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGR 218 Query: 251 ALRVNVAEERPPRRF 207 A+RVNVAEERP R F Sbjct: 219 AVRVNVAEERPRRAF 233 Score = 82.4 bits (202), Expect = 1e-15 Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 5/102 (4%) Frame = -2 Query: 503 GARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGF 324 G PP ++ +++VGNLP+ VD +L +F G V A V+Y+R+T RSRGFGF Sbjct: 45 GQGFSEPPEEA----KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGF 100 Query: 323 VTMASQEELDDAIAALDGQSLEGRALRVNVA-----EERPPR 213 VTM++ EE + A+ L+G ++GR L VN A ER PR Sbjct: 101 VTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPR 142
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 139 bits (350), Expect = 7e-33 Identities = 76/141 (53%), Positives = 92/141 (65%), Gaps = 7/141 (4%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSG-------SSFRI 453 G MS+ EE E A + F+ Y+++GR L VN P R R SS R+ Sbjct: 131 GFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRV 190 Query: 452 YVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALD 273 YVGNL W VD L LFSE GKVVDA+VVYDRD+GRSRGFGFVT +S EE+++AI +LD Sbjct: 191 YVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLD 250 Query: 272 GQSLEGRALRVNVAEERPPRR 210 G L GRA+RV+ AE RPPRR Sbjct: 251 GVDLNGRAIRVSPAEARPPRR 271 Score = 86.7 bits (213), Expect = 5e-17 Identities = 42/81 (51%), Positives = 55/81 (67%) Frame = -2 Query: 479 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 300 R+ +I+VGNLP+ D + L ELF G V V+YD+ TGRSRGFGFVTM+S+EE Sbjct: 81 RNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 299 LDDAIAALDGQSLEGRALRVN 237 ++ A +G L+GRALRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 138 bits (348), Expect = 1e-32 Identities = 76/147 (51%), Positives = 94/147 (63%), Gaps = 13/147 (8%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGS----------- 465 G MS+ EE E A + F+ Y+++GR L VN P R R++ S Sbjct: 131 GFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSF 190 Query: 464 --SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 291 S R+YVGNL W VD L LFSE GKVVDA+VVYDRD+GRSRGFGFVT +S EE+++ Sbjct: 191 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 250 Query: 290 AIAALDGQSLEGRALRVNVAEERPPRR 210 AI +LDG L GRA+RV+ AE RPPRR Sbjct: 251 AIESLDGVDLNGRAIRVSPAEARPPRR 277 Score = 82.8 bits (203), Expect = 8e-16 Identities = 41/81 (50%), Positives = 54/81 (66%) Frame = -2 Query: 479 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 300 R+ +I+VGNL + D + L ELF G V V+YD+ TGRSRGFGFVTM+S+EE Sbjct: 81 RNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 299 LDDAIAALDGQSLEGRALRVN 237 ++ A +G L+GRALRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 137 bits (344), Expect = 3e-32 Identities = 75/153 (49%), Positives = 95/153 (62%), Gaps = 19/153 (12%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVE---RPPRDS---------- 471 G MS++ E E A + F+ Y+++GR L VN P R + R PR S Sbjct: 135 GFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGG 194 Query: 470 ------GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 309 GS R+YVGNL W VDD L LFSE GKVV+ARV+YDRD+GRS+GFGFVT S Sbjct: 195 GGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDS 254 Query: 308 QEELDDAIAALDGQSLEGRALRVNVAEERPPRR 210 +E+ +AI +LDG L+GR +RV+ AE RPPRR Sbjct: 255 SQEVQNAIKSLDGADLDGRQIRVSEAEARPPRR 287 Score = 87.0 bits (214), Expect = 4e-17 Identities = 45/94 (47%), Positives = 62/94 (65%), Gaps = 2/94 (2%) Frame = -2 Query: 485 PPRDSGSS--FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMA 312 PP++ S +++VGNLP+ VD ++L +LF G V V+YD+ TGRSRGFGFVTM+ Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMS 140 Query: 311 SQEELDDAIAALDGQSLEGRALRVNVAEERPPRR 210 S E++ A +G L+GR LRVN A PP+R Sbjct: 141 SVSEVEAAAQQFNGYELDGRPLRVN-AGPPPPKR 173
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 136 bits (343), Expect = 4e-32 Identities = 79/162 (48%), Positives = 100/162 (61%), Gaps = 27/162 (16%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--------------RD 474 G MST EE E A + F+ Y+++GR + VN A P A+ E RD Sbjct: 131 GFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN-AGPAPAKRENSSFGGGRGGNSSYGGGRD 189 Query: 473 SGSSF-------------RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRG 333 SSF R+YVGNL W VDD L ELFSE G VVDA+VVYDRD+GRSRG Sbjct: 190 GNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRG 249 Query: 332 FGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEERPPRRF 207 FGFVT +S +E++DAI +L+G L+GR++RV+ AEERP R+F Sbjct: 250 FGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRRQF 291 Score = 81.6 bits (200), Expect = 2e-15 Identities = 44/95 (46%), Positives = 61/95 (64%) Frame = -2 Query: 494 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 315 V PR S +++VGNLP+ VD + L LF G V V+YD+ TGRSRGFGFVTM Sbjct: 77 VAEQPRFS-EDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTM 135 Query: 314 ASQEELDDAIAALDGQSLEGRALRVNVAEERPPRR 210 +++EE++ A +G ++GRA+RVN A P +R Sbjct: 136 STKEEVEAAEQQFNGYEIDGRAIRVN-AGPAPAKR 169
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 135 bits (341), Expect = 7e-32 Identities = 79/162 (48%), Positives = 100/162 (61%), Gaps = 27/162 (16%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--------------RD 474 G MST EE E A + F+ Y+++GR + VN A P A+ E RD Sbjct: 132 GFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN-AGPAPAKRENSSFGGGRGGNSSYGGGRD 190 Query: 473 SGSSF-------------RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRG 333 SSF R+YVGNL W VDD L ELFSE G VVDA+VVYDRD+GRSRG Sbjct: 191 GNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRG 250 Query: 332 FGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEERPPRRF 207 FGFVT +S +E++DAI +L+G L+GR++RV+ AEERP R+F Sbjct: 251 FGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRRQF 292 Score = 80.1 bits (196), Expect = 5e-15 Identities = 43/95 (45%), Positives = 61/95 (64%) Frame = -2 Query: 494 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 315 V PR S +++VGNLP+ VD + L LF G V V+YD+ +GRSRGFGFVTM Sbjct: 78 VAEQPRFS-EDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTM 136 Query: 314 ASQEELDDAIAALDGQSLEGRALRVNVAEERPPRR 210 +++EE++ A +G ++GRA+RVN A P +R Sbjct: 137 STKEEVEAAEQQFNGYEIDGRAIRVN-AGPAPAKR 170
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 114 bits (286), Expect = 2e-25 Identities = 54/87 (62%), Positives = 69/87 (79%) Frame = -2 Query: 473 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 294 SGS R+YVGNL W VDD L LF+E GKVV+ARV+YDRD+GRS+GFGFVT++S +E+ Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312 Query: 293 DAIAALDGQSLEGRALRVNVAEERPPR 213 AI +L+G L+GR +RV+ AE RPPR Sbjct: 313 KAINSLNGADLDGRQIRVSEAEARPPR 339 Score = 79.7 bits (195), Expect = 6e-15 Identities = 40/83 (48%), Positives = 55/83 (66%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +++VGNL + VD ++L +LF G V V+YD+ TGRSRGFGFVTM++ E++ A Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 278 LDGQSLEGRALRVNVAEERPPRR 210 +G EGR LRVN A PP+R Sbjct: 160 FNGYEFEGRPLRVN-AGPPPPKR 181
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 93.2 bits (230), Expect = 6e-19 Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 9/137 (6%) Frame = -2 Query: 599 MSTIEEAEKAVEMFHRYDVNGRLLTVN-KAAPRGARVERPPRDSGSSF--------RIYV 447 M ++EEA++A+ +F V GR + VN PRG E S++ ++YV Sbjct: 162 MGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYV 221 Query: 446 GNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQ 267 NL W + L + F++ + A+V+YDR +GRSRGFGF+T +S E ++ A+ ++ Sbjct: 222 ANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEV 281 Query: 266 SLEGRALRVNVAEERPP 216 LEGR LR+NVA ++ P Sbjct: 282 ELEGRPLRLNVAGQKAP 298 Score = 89.0 bits (219), Expect = 1e-17 Identities = 49/124 (39%), Positives = 67/124 (54%) Frame = -2 Query: 599 MSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDD 420 +ST VE+ D L+ + + ER +S R+YVGNLP+ + Sbjct: 68 LSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTS 127 Query: 419 SRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 240 S+L E+F+E G V + +VYDR T RSRGF FVTM S EE +AI DG + GR ++V Sbjct: 128 SQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKV 187 Query: 239 NVAE 228 N E Sbjct: 188 NFPE 191
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 89.7 bits (221), Expect = 6e-18 Identities = 38/80 (47%), Positives = 58/80 (72%) Frame = -2 Query: 461 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 +R +VG L W DD L FS++G+V+D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 8 YRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 281 ALDGQSLEGRALRVNVAEER 222 ++GQ L+GR++ VN A+ R Sbjct: 68 GMNGQDLDGRSITVNEAQSR 87
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 88.2 bits (217), Expect = 2e-17 Identities = 37/80 (46%), Positives = 57/80 (71%) Frame = -2 Query: 461 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 +R +VG L W DD L F+++G V+D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67 Query: 281 ALDGQSLEGRALRVNVAEER 222 ++GQ L+GR++ VN A+ R Sbjct: 68 GMNGQDLDGRSITVNEAQSR 87
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 87.0 bits (214), Expect = 4e-17 Identities = 37/80 (46%), Positives = 57/80 (71%) Frame = -2 Query: 461 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 +R +VG L W D+ L FS+ G++VD++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 8 YRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 281 ALDGQSLEGRALRVNVAEER 222 ++GQ L+GR++ VN A+ R Sbjct: 68 GMNGQDLDGRSITVNEAQSR 87 Score = 29.3 bits (64), Expect = 9.9 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -2 Query: 572 AVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFR 456 A+E + D++GR +TVN+A RG+ R G +R Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYR 103
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 85.5 bits (210), Expect = 1e-16 Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 2/88 (2%) Frame = -2 Query: 464 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 S ++++G L W DD+ L + F+ G VVDA+V+ DR+TGRSRGFGFV + AI Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 284 AALDGQSLEGRALRVNVAEERP--PRRF 207 + +DG+ L GR +RVN A +RP PR + Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAPRAY 121
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 85.5 bits (210), Expect = 1e-16 Identities = 36/80 (45%), Positives = 56/80 (70%) Frame = -2 Query: 461 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 +R +VG L W D+ L FS+ G+V+D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65 Query: 281 ALDGQSLEGRALRVNVAEER 222 ++G+ L+GR + VN A+ R Sbjct: 66 EMNGKELDGRTITVNEAQSR 85
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 85.1 bits (209), Expect = 2e-16 Identities = 36/80 (45%), Positives = 55/80 (68%) Frame = -2 Query: 461 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 +R +VG L W +D L + FS+ G + D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 6 YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65 Query: 281 ALDGQSLEGRALRVNVAEER 222 ++GQ L+GR + VN A+ R Sbjct: 66 GMNGQELDGRNITVNEAQSR 85
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 83.6 bits (205), Expect = 4e-16 Identities = 36/80 (45%), Positives = 58/80 (72%) Frame = -2 Query: 461 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 +R +VG L W ++ L + F+ G+V+D++V+ DR+TGRSRGFGFVT +S++ + DAI Sbjct: 8 YRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIE 67 Query: 281 ALDGQSLEGRALRVNVAEER 222 ++G+ L+GR + VN A+ R Sbjct: 68 NMNGKELDGRNITVNQAQSR 87
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 82.4 bits (202), Expect = 1e-15 Identities = 35/80 (43%), Positives = 55/80 (68%) Frame = -2 Query: 461 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 +R +VG L W +D L FS+ G V+D++++ DR++GRSRGFGFVT ++ + DAI Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65 Query: 281 ALDGQSLEGRALRVNVAEER 222 ++G+ L+GR + VN A+ R Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 82.0 bits (201), Expect = 1e-15 Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 6/133 (4%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVN--KAAPRGARVERPPRDSG----SSFRIY 450 G M T+E+A +E + ++ GR + VN + G + + S +++Y Sbjct: 128 GFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVY 187 Query: 449 VGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 270 +GNL V + L + FSE GKV+ A+V T +S GFGFV+ +S+EE++ AI AL+ Sbjct: 188 IGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNN 247 Query: 269 QSLEGRALRVNVA 231 LEG+ +RVN A Sbjct: 248 SVLEGQKIRVNKA 260 Score = 70.5 bits (171), Expect = 4e-12 Identities = 33/84 (39%), Positives = 53/84 (63%) Frame = -2 Query: 476 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 297 D + R+YVGN+P +++ L + EHG + A V+YD+ +GRSR FGFVTM + E+ Sbjct: 79 DGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDA 138 Query: 296 DDAIAALDGQSLEGRALRVNVAEE 225 + I L+ + GR ++VN+ E+ Sbjct: 139 NAVIEKLNDTEIGGRKIKVNITEK 162
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 81.6 bits (200), Expect = 2e-15 Identities = 35/80 (43%), Positives = 56/80 (70%) Frame = -2 Query: 461 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 +R +VG L W + L F+ +G+++D++V+ DR+TGRSRGFGFVT +S+ + DAI Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67 Query: 281 ALDGQSLEGRALRVNVAEER 222 ++G+ L+GR + VN A+ R Sbjct: 68 NMNGKELDGRNITVNQAQSR 87
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 79.3 bits (194), Expect = 8e-15 Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 4/137 (2%) Frame = -2 Query: 617 DSGLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAP----RGARVERPPRDSGSSFRIY 450 +SG S S+ E+E + E D R KA P R A++ +P +DS + ++ Sbjct: 217 ESGDSDSSSDSESESSSE-----DEKKR-----KAEPASEERPAKITKPSQDSNETCTVF 266 Query: 449 VGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 270 VG L W VDD L + F E+G +V ARV+ D +GRS+G+G+V + E A+AA Sbjct: 267 VGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGT 326 Query: 269 QSLEGRALRVNVAEERP 219 + ++GR + ++++ RP Sbjct: 327 KEIDGRMVNLDLSNPRP 343 Score = 49.3 bits (116), Expect = 9e-06 Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 9/139 (6%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF--------- 459 G T E A+ AV +++GR++ ++ + PR A + + +F Sbjct: 307 GYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSD 366 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++VGNL + + L F G + R+ D +GR +GFG+VT + + + Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-E 425 Query: 278 LDGQSLEGRALRVNVAEER 222 ++G + GR R++ + R Sbjct: 426 MNGHFIAGRPCRLDFSTPR 444
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 74.7 bits (182), Expect = 2e-13 Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Frame = -2 Query: 488 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 309 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 308 QEELDDAIAALDGQSLEGRALRV-NVAEER 222 QE A+ L+G+ GRALRV N A E+ Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEK 96
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 74.7 bits (182), Expect = 2e-13 Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Frame = -2 Query: 488 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 309 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 308 QEELDDAIAALDGQSLEGRALRV-NVAEER 222 QE A+ L+G+ GRALRV N A E+ Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEK 96
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 74.3 bits (181), Expect = 3e-13 Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Frame = -2 Query: 488 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 309 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 308 QEELDDAIAALDGQSLEGRALRV-NVAEER 222 QE A+ L+G+ GRALRV N A E+ Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEK 96
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 74.3 bits (181), Expect = 3e-13 Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Frame = -2 Query: 488 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 309 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 308 QEELDDAIAALDGQSLEGRALRV-NVAEER 222 QE A+ L+G+ GRALRV N A E+ Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEK 96
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 74.3 bits (181), Expect = 3e-13 Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Frame = -2 Query: 488 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 309 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 308 QEELDDAIAALDGQSLEGRALRV-NVAEER 222 QE A+ L+G+ GRALRV N A E+ Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEK 96
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 74.3 bits (181), Expect = 3e-13 Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Frame = -2 Query: 488 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 309 R P S ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 308 QEELDDAIAALDGQSLEGRALRV-NVAEER 222 QE A+ L+G+ GRALRV N A E+ Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEK 96
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 72.4 bits (176), Expect = 1e-12 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 8/126 (6%) Frame = -2 Query: 569 VEMFHRYDVNGRLLTVNKAAPRGARVE--------RPPRDSGSSFRIYVGNLPWQVDDSR 414 VE + D L +N G V+ +D+ + F ++VG+L ++ Sbjct: 53 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTED 112 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 + F+ GK+ DARVV D TG+S+G+GFV+ ++ + ++AI + GQ L GR +R N Sbjct: 113 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 172 Query: 233 AEERPP 216 A +PP Sbjct: 173 ATRKPP 178 Score = 39.7 bits (91), Expect = 0.007 Identities = 22/82 (26%), Positives = 44/82 (53%) Frame = -2 Query: 476 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 297 D G +YVGNL V + +++LFS+ G +++ + + + + FV + Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDA 61 Query: 296 DDAIAALDGQSLEGRALRVNVA 231 A+AA++G+ + G+ ++VN A Sbjct: 62 AAALAAMNGRKILGKEVKVNWA 83
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 72.4 bits (176), Expect = 1e-12 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 8/126 (6%) Frame = -2 Query: 569 VEMFHRYDVNGRLLTVNKAAPRGARVE--------RPPRDSGSSFRIYVGNLPWQVDDSR 414 VE + D L +N G V+ +D+ + F ++VG+L ++ Sbjct: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTED 129 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 + F+ GK+ DARVV D TG+S+G+GFV+ ++ + ++AI + GQ L GR +R N Sbjct: 130 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 189 Query: 233 AEERPP 216 A +PP Sbjct: 190 ATRKPP 195 Score = 38.1 bits (87), Expect = 0.021 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 15/97 (15%) Frame = -2 Query: 476 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR----SRGFG------ 327 D G +YVGNL V + +++LFS+ G +++ ++ R S GF Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63 Query: 326 -----FVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 FV + A+AA++G+ + G+ ++VN A Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 100
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 72.0 bits (175), Expect = 1e-12 Identities = 38/81 (46%), Positives = 51/81 (62%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 IYVGNL + V ++ L +F+E+G V ++ DR+TGR RGFGFV + + E AI AL Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 275 DGQSLEGRALRVNVAEERPPR 213 DG GR L+VN A+ R R Sbjct: 63 DGAEWMGRDLKVNKAKPRENR 83
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 71.2 bits (173), Expect = 2e-12 Identities = 34/81 (41%), Positives = 52/81 (64%) Frame = -2 Query: 473 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 294 S +++VG L + D+ L + FS G + + VV DR+T RSRGFGF+T + E Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61 Query: 293 DAIAALDGQSLEGRALRVNVA 231 DA+ A++G+SL+GR +RV+ A Sbjct: 62 DAMRAMNGESLDGRQIRVDHA 82
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 70.9 bits (172), Expect = 3e-12 Identities = 43/134 (32%), Positives = 67/134 (50%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G T E A +A++ + +N R + V R R +Y+ N Sbjct: 141 GFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGE 200 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +DD RL E+FS G + +V+ D DTGRSRGFGFV + EE A++ ++G+ + GR Sbjct: 201 DMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259 Query: 251 ALRVNVAEERPPRR 210 + V A++R R+ Sbjct: 260 MIYVGRAQKRIERQ 273 Score = 68.9 bits (167), Expect = 1e-11 Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 12/138 (8%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARV------------ERPPRDSGSSFRIYVG 444 EEA+KAV + +VNGR++ V +A R R ER R G + +YV Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN--LYVK 299 Query: 443 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 264 NL +DD RL + FS +G + A+V+ + G S+GFGFV +S EE A+ ++G+ Sbjct: 300 NLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357 Query: 263 LEGRALRVNVAEERPPRR 210 + + L V +A+ + R+ Sbjct: 358 VSTKPLYVALAQRKEERK 375 Score = 47.8 bits (112), Expect = 3e-05 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 2/126 (1%) Frame = -2 Query: 584 EAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRL 411 +AE+A++ + + GR + + + +R P R SG +++ NL +D+ L Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWS-------QRDPGLRKSGVG-NVFIKNLDESIDNKAL 115 Query: 410 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 + FS G ++ +VV D SRG+GFV +QE + AI ++G L R + V Sbjct: 116 YDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF 173 Query: 230 EERPPR 213 + R R Sbjct: 174 KSRRER 179
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 70.9 bits (172), Expect = 3e-12 Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 6/122 (4%) Frame = -2 Query: 569 VEMFHRYDVNGRLLTVNKAAPRGARV------ERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 VE +D N L T+N V + S +F ++VG+L VDD L Sbjct: 119 VEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLR 178 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 228 F + + V++D TG SRG+GFV+ SQ++ +A+ ++ GQ L GR LR+N A Sbjct: 179 NAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 238 Query: 227 ER 222 +R Sbjct: 239 KR 240 Score = 37.0 bits (84), Expect = 0.047 Identities = 17/75 (22%), Positives = 40/75 (53%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 +YVGNL + + L + F G + + +++ D++ ++ + FV + + A+ L Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTL 134 Query: 275 DGQSLEGRALRVNVA 231 +G+ +E +++N A Sbjct: 135 NGKQIENNIVKINWA 149 Score = 34.3 bits (77), Expect = 0.31 Identities = 24/88 (27%), Positives = 41/88 (46%) Frame = -2 Query: 485 PPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 306 PPR + + Y+GN+P ++ L+ LF G ++D + + +G F+ + Sbjct: 336 PPRVTTA----YIGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIKYDTH 385 Query: 305 EELDDAIAALDGQSLEGRALRVNVAEER 222 E+ I AL +GR LR +ER Sbjct: 386 EQAAVCIVALANFPFQGRNLRTGWGKER 413
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 70.9 bits (172), Expect = 3e-12 Identities = 32/83 (38%), Positives = 58/83 (69%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 278 LDGQSLEGRALRVNVAEERPPRR 210 ++G+S++GR +RV+ A + R Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 70.9 bits (172), Expect = 3e-12 Identities = 32/83 (38%), Positives = 58/83 (69%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 278 LDGQSLEGRALRVNVAEERPPRR 210 ++G+S++GR +RV+ A + R Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 70.9 bits (172), Expect = 3e-12 Identities = 32/83 (38%), Positives = 58/83 (69%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 278 LDGQSLEGRALRVNVAEERPPRR 210 ++G+S++GR +RV+ A + R Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 70.9 bits (172), Expect = 3e-12 Identities = 32/83 (38%), Positives = 58/83 (69%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 278 LDGQSLEGRALRVNVAEERPPRR 210 ++G+S++GR +RV+ A + R Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 70.9 bits (172), Expect = 3e-12 Identities = 32/83 (38%), Positives = 58/83 (69%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 278 LDGQSLEGRALRVNVAEERPPRR 210 ++G+S++GR +RV+ A + R Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNR 89
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 69.3 bits (168), Expect = 9e-12 Identities = 42/134 (31%), Positives = 67/134 (50%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G T E A +A++ + +N R + V R R +Y+ N Sbjct: 141 GFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGE 200 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +DD RL E+FS G + +V+ D D+GRSRGFGFV + EE A++ ++G+ + GR Sbjct: 201 DMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259 Query: 251 ALRVNVAEERPPRR 210 + V A++R R+ Sbjct: 260 MIYVGRAQKRIERQ 273 Score = 66.6 bits (161), Expect = 6e-11 Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 10/136 (7%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPR----------DSGSSFRIYVGNL 438 EEA+KAV + +VNGR++ V +A R R R + +YV NL Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301 Query: 437 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 +DD RL + F +G + A+V+ + G S+GFGFV +S EE A+ ++G+ + Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359 Query: 257 GRALRVNVAEERPPRR 210 + L V +A+ + R+ Sbjct: 360 TKPLYVALAQRKEERK 375 Score = 45.8 bits (107), Expect = 1e-04 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 2/126 (1%) Frame = -2 Query: 584 EAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRL 411 +AE+A++ + + GR + + + +R P R SG +++ NL +D+ L Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWS-------QRDPGLRKSGVG-NVFIKNLDESIDNKAL 115 Query: 410 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 + FS G ++ +VV D SRG+GFV + E + AI ++G L R + V Sbjct: 116 YDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHF 173 Query: 230 EERPPR 213 + R R Sbjct: 174 KSRRER 179
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 69.3 bits (168), Expect = 9e-12 Identities = 34/82 (41%), Positives = 53/82 (64%) Frame = -2 Query: 464 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 S ++Y+G L D+ L + FS V +ARV+ ++ TGRSRG+GFV S++ + AI Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89 Query: 284 AALDGQSLEGRALRVNVAEERP 219 +A++GQ L G + VNVA++ P Sbjct: 90 SAMNGQELNGFNISVNVAKDWP 111
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 69.3 bits (168), Expect = 9e-12 Identities = 39/128 (30%), Positives = 69/128 (53%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 414 T E A+KA+E + +N R + V + R R + +Y+ N +VDD Sbjct: 147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 L ELFS+ GK + +V+ D G+S+GFGFV+ E+ + A+ ++G+ + G+ + V Sbjct: 207 LKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGR 265 Query: 233 AEERPPRR 210 A+++ R+ Sbjct: 266 AQKKVERQ 273 Score = 65.5 bits (158), Expect(2) = 4e-11 Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 12/138 (8%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARV------------ERPPRDSGSSFRIYVG 444 E+A KAVE + +++G+++ V +A + R ER R G + +Y+ Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN--LYIK 299 Query: 443 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 264 NL +DD +L + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ Sbjct: 300 NLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRI 357 Query: 263 LEGRALRVNVAEERPPRR 210 + + L V +A+ + R+ Sbjct: 358 VGSKPLYVALAQRKEERK 375 Score = 21.6 bits (44), Expect(2) = 4e-11 Identities = 7/11 (63%), Positives = 10/11 (90%) Frame = -1 Query: 621 RGFGFVTHEYH 589 +GFGFV++E H Sbjct: 231 KGFGFVSYEKH 241
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 68.6 bits (166), Expect = 1e-11 Identities = 29/76 (38%), Positives = 56/76 (73%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++G L ++ ++ L + F+++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 278 LDGQSLEGRALRVNVA 231 ++G+S++GR +RV+ A Sbjct: 66 MNGKSVDGRQIRVDQA 81
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 68.6 bits (166), Expect = 1e-11 Identities = 40/134 (29%), Positives = 69/134 (51%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G T E AE+A++ + +N R + V + R R + +Y+ N Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +DD RL E F ++G + +V+ D D G+SRGFGFV+ E+ A+ ++G+ L G+ Sbjct: 201 DMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGK 259 Query: 251 ALRVNVAEERPPRR 210 A+ V A+++ R+ Sbjct: 260 AIFVGRAQKKVERQ 273 Score = 65.5 bits (158), Expect(2) = 4e-11 Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 10/136 (7%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNL 438 E+A+KAV+ + D+NG+ + V +A + R E+ +D + ++ +YV NL Sbjct: 242 EDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301 Query: 437 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 +DD RL + F+ G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + Sbjct: 302 DDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 257 GRALRVNVAEERPPRR 210 + L V +A+ + R+ Sbjct: 360 TKPLYVALAQRKEERQ 375 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/81 (32%), Positives = 43/81 (53%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158 Query: 275 DGQSLEGRALRVNVAEERPPR 213 +G L R + V + R R Sbjct: 159 NGMLLNDRKVFVGRFKSRKER 179 Score = 21.6 bits (44), Expect(2) = 4e-11 Identities = 8/11 (72%), Positives = 9/11 (81%) Frame = -1 Query: 621 RGFGFVTHEYH 589 RGFGFV+ E H Sbjct: 231 RGFGFVSFERH 241
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 68.6 bits (166), Expect = 1e-11 Identities = 33/86 (38%), Positives = 54/86 (62%) Frame = -2 Query: 473 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 294 S + F ++VG+L Q+ + F+ G++ DARVV D TG+S+G+GFV+ ++ + + Sbjct: 102 SQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161 Query: 293 DAIAALDGQSLEGRALRVNVAEERPP 216 +AI + GQ L GR +R N A +PP Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPP 187 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/75 (29%), Positives = 43/75 (57%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 +YVGNL V ++ +++LFS+ G + +++ DT + + FV A+AA+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMI--MDTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 275 DGQSLEGRALRVNVA 231 +G+ + G+ ++VN A Sbjct: 67 NGRKIMGKEVKVNWA 81
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 68.2 bits (165), Expect = 2e-11 Identities = 37/126 (29%), Positives = 71/126 (56%), Gaps = 5/126 (3%) Frame = -2 Query: 581 AEKAVEMFHRYDVNGRLL----TVNKAAPRGARVER-PPRDSGSSFRIYVGNLPWQVDDS 417 AEKA++ +++GR + + +K A R ++ S S +++GNL + D Sbjct: 222 AEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRD 281 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 + ELF++HG+VV R+ +T + +GFG+V ++ E+ A+ AL G+ ++ R +R++ Sbjct: 282 AIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLD 341 Query: 236 VAEERP 219 + RP Sbjct: 342 FSSPRP 347 Score = 67.8 bits (164), Expect = 3e-11 Identities = 29/79 (36%), Positives = 49/79 (62%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 I+VG L W +DD L + F G V+ ARV+Y+R T RSRG+G+V ++ + AI + Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 275 DGQSLEGRALRVNVAEERP 219 G+ ++GR + +++ +P Sbjct: 230 QGKEIDGRPINCDMSTSKP 248
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 68.2 bits (165), Expect = 2e-11 Identities = 42/123 (34%), Positives = 73/123 (59%), Gaps = 1/123 (0%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 E+A+ A+++ + + G+ + VNKA+ + D G++ I+VGNL +VD+ L Sbjct: 65 EDADYAIKILNMIKLYGKPIKVNKASAHEKNM-----DVGAN--IFVGNLDPEVDEKLLY 117 Query: 407 ELFSEHGKVVDA-RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 + FS G ++ +++ D D+G S+GF F+ AS E D A+ A++GQ L RA+ V+ A Sbjct: 118 DTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177 Query: 230 EER 222 +R Sbjct: 178 FKR 180 Score = 53.5 bits (127), Expect = 5e-07 Identities = 31/75 (41%), Positives = 42/75 (56%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 IYVG L +V +S L EL + G VV + DR T +GFGFV +E+ D AI L Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 275 DGQSLEGRALRVNVA 231 + L G+ ++VN A Sbjct: 75 NMIKLYGKPIKVNKA 89
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 67.8 bits (164), Expect = 3e-11 Identities = 39/134 (29%), Positives = 69/134 (51%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G T E AE+A+E + +N R + V + R R + +Y+ N Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +DD RL ELF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 251 ALRVNVAEERPPRR 210 + V A+++ R+ Sbjct: 260 QIYVGRAQKKVERQ 273 Score = 64.7 bits (156), Expect = 2e-10 Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 10/136 (7%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNL 438 E+A+KAV+ + ++NG+ + V +A + R E+ +D + ++ +YV NL Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301 Query: 437 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 257 GRALRVNVAEERPPRR 210 + L V +A+ + R+ Sbjct: 360 TKPLYVALAQRKEERQ 375 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/81 (32%), Positives = 43/81 (53%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 275 DGQSLEGRALRVNVAEERPPR 213 +G L R + V + R R Sbjct: 159 NGMLLNDRKVFVGRFKSRKER 179
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 67.8 bits (164), Expect = 3e-11 Identities = 33/81 (40%), Positives = 51/81 (62%) Frame = -2 Query: 473 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 294 S +++VG L + D+ L + FS G + + VV DR+T RSRGFGF+T + E Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61 Query: 293 DAIAALDGQSLEGRALRVNVA 231 A+ A++G+SL+GR +RV+ A Sbjct: 62 VAMRAMNGESLDGRQIRVDHA 82
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 67.8 bits (164), Expect = 3e-11 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 1/156 (0%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G T E A +++ + +NG+ + V K PR R + + +YV N Sbjct: 133 GFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTE 192 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSL-EG 255 DD +L E F +GK+ +V+ ++ G+S+GFGFV + E + A+ AL+G+ + EG Sbjct: 193 DFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEG 251 Query: 254 RALRVNVAEERPPRRF**KYIWRCTTTRLLRKRHDS 147 ++L V A+++ R+ K + L +KRH+S Sbjct: 252 KSLYVARAQKKAERQQELKRKFE----ELKQKRHES 283 Score = 63.5 bits (153), Expect = 5e-10 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 11/145 (7%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVN-GRLLTVNKAAPRGARVERPPR----------DSGS 465 G T E AE AV+ + D+ G+ L V +A + R + R +S Sbjct: 226 GFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVF 285 Query: 464 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 +YV NL +DD RL FS +G + A+V+ D + GRS+GFGFV + E A+ Sbjct: 286 GVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAV 344 Query: 284 AALDGQSLEGRALRVNVAEERPPRR 210 L+G+ + + L V +A+ + R+ Sbjct: 345 TELNGRVVGSKPLYVALAQRKEERK 369 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/82 (29%), Positives = 43/82 (52%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 +YVG+LP V++S L + FS G V+ RV D T RS G+ +V + + A+ + Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63 Query: 275 DGQSLEGRALRVNVAEERPPRR 210 + + + +R+ ++ P R Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLR 85 Score = 43.9 bits (102), Expect = 4e-04 Identities = 20/72 (27%), Positives = 41/72 (56%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 +++ NL +D+ + + FS G ++ +V D + G S+G+GFV ++E + +I + Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKV 150 Query: 275 DGQSLEGRALRV 240 +G L G+ + V Sbjct: 151 NGMLLNGKKVYV 162
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 67.0 bits (162), Expect = 4e-11 Identities = 32/86 (37%), Positives = 53/86 (61%) Frame = -2 Query: 473 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 294 S F ++VG+L ++ + F+ G++ DARVV D TG+S+G+GFV+ ++ + + Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161 Query: 293 DAIAALDGQSLEGRALRVNVAEERPP 216 +AI + GQ L GR +R N A +PP Sbjct: 162 NAIQQMGGQWLGGRQIRTNWATRKPP 187 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/75 (29%), Positives = 43/75 (57%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 +YVGNL V ++ +++LFS+ G + +++ DT + + FV A+AA+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMI--MDTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 275 DGQSLEGRALRVNVA 231 +G+ + G+ ++VN A Sbjct: 67 NGRKIMGKEVKVNWA 81
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 67.0 bits (162), Expect = 4e-11 Identities = 41/134 (30%), Positives = 66/134 (49%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G T E A +A++ + +N R + V R R +Y+ N Sbjct: 141 GFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGE 200 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +DD RL E+FS G + +V+ D ++GRSRGFGFV + EE A+ ++G+ + GR Sbjct: 201 DMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGR 259 Query: 251 ALRVNVAEERPPRR 210 + V A++R R+ Sbjct: 260 MVYVGRAQKRIERQ 273 Score = 66.6 bits (161), Expect = 6e-11 Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 12/138 (8%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARV------------ERPPRDSGSSFRIYVG 444 EEA+KAV + +VNGR++ V +A R R ER R G + +YV Sbjct: 242 EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN--LYVK 299 Query: 443 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 264 NL +DD RL + FS +G + +V+ + G S+GFGFV +S EE A+ ++G+ Sbjct: 300 NLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357 Query: 263 LEGRALRVNVAEERPPRR 210 + + L V +A+ + R+ Sbjct: 358 VSTKPLYVALAQRKEERK 375 Score = 46.2 bits (108), Expect = 8e-05 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 2/126 (1%) Frame = -2 Query: 584 EAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRL 411 +AE+A++ + + GR + + + +R P R SG +++ NL +D+ L Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWS-------QRDPGLRKSGVG-NVFIKNLDDSIDNKAL 115 Query: 410 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 + FS G ++ +VV D SRG+GFV +QE + AI ++G L R + V Sbjct: 116 YDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF 173 Query: 230 EERPPR 213 + R R Sbjct: 174 KSRRER 179
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 65.5 bits (158), Expect(2) = 5e-11 Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 12/138 (8%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARV------------ERPPRDSGSSFRIYVG 444 E+A KAVE + ++NG L V +A + R+ E+ + G + ++V Sbjct: 269 EDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN--LFVK 326 Query: 443 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 264 NL VDD +L E F+ +G + A+V+ + G+S+GFGFV ++ EE AI + Q Sbjct: 327 NLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQI 385 Query: 263 LEGRALRVNVAEERPPRR 210 + G+ L V +A+ + RR Sbjct: 386 VAGKPLYVAIAQRKDVRR 403 Score = 55.1 bits (131), Expect = 2e-07 Identities = 35/123 (28%), Positives = 60/123 (48%) Frame = -2 Query: 581 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 402 A++A++ + +NG+ + V R R + +YV N+ + D + EL Sbjct: 178 AKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQEL 237 Query: 401 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 F++ G +V A + D D G+ +GFGFV E+ A+ AL+ L G L V A+++ Sbjct: 238 FAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK 296 Query: 221 PPR 213 R Sbjct: 297 NER 299 Score = 53.9 bits (128), Expect = 4e-07 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSR 414 E KA+E + + GRL + + +R P R GS I++ NL +D+ Sbjct: 89 EAGRKAIEQLNYTPIKGRLCRIMWS-------QRDPSLRKKGSG-NIFIKNLHPDIDNKA 140 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 240 L + FS G ++ +++ D + G+S+GFGFV + +AI AL+G L G+ + V Sbjct: 141 LYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 197 Score = 45.1 bits (105), Expect = 2e-04 Identities = 28/86 (32%), Positives = 42/86 (48%) Frame = -2 Query: 467 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 288 SS +YVG+L V ++ L ++FS G V RV D T S G+ +V E A Sbjct: 35 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 94 Query: 287 IAALDGQSLEGRALRVNVAEERPPRR 210 I L+ ++GR R+ ++ P R Sbjct: 95 IEQLNYTPIKGRLCRIMWSQRDPSLR 120 Score = 21.2 bits (43), Expect(2) = 5e-11 Identities = 7/11 (63%), Positives = 9/11 (81%) Frame = -1 Query: 621 RGFGFVTHEYH 589 +GFGFV +E H Sbjct: 258 KGFGFVNYEKH 268
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 66.6 bits (161), Expect = 6e-11 Identities = 38/134 (28%), Positives = 69/134 (51%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G T E AE+A+E + +N R + V + R R + +Y+ N Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +DD RL +LF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 251 ALRVNVAEERPPRR 210 + V A+++ R+ Sbjct: 260 QIYVGRAQKKVERQ 273 Score = 64.7 bits (156), Expect = 2e-10 Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 10/136 (7%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNL 438 E+A+KAV+ + ++NG+ + V +A + R E+ +D + ++ +YV NL Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301 Query: 437 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 257 GRALRVNVAEERPPRR 210 + L V +A+ + R+ Sbjct: 360 TKPLYVALAQRKEERQ 375 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/81 (32%), Positives = 43/81 (53%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 275 DGQSLEGRALRVNVAEERPPR 213 +G L R + V + R R Sbjct: 159 NGMLLNDRKVFVGRFKSRKER 179
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 66.6 bits (161), Expect = 6e-11 Identities = 38/134 (28%), Positives = 69/134 (51%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G T E AE+A+E + +N R + V + R R + +Y+ N Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +DD RL +LF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 251 ALRVNVAEERPPRR 210 + V A+++ R+ Sbjct: 260 QIYVGRAQKKVERQ 273 Score = 64.7 bits (156), Expect = 2e-10 Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 10/136 (7%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNL 438 E+A+KAV+ + ++NG+ + V +A + R E+ +D + ++ +YV NL Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301 Query: 437 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 257 GRALRVNVAEERPPRR 210 + L V +A+ + R+ Sbjct: 360 TKPLYVALAQRKEERQ 375 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/81 (32%), Positives = 43/81 (53%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 275 DGQSLEGRALRVNVAEERPPR 213 +G L R + V + R R Sbjct: 159 NGMLLNDRKVFVGRFKSRKER 179
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 66.6 bits (161), Expect = 6e-11 Identities = 38/134 (28%), Positives = 70/134 (52%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G T E AE+A++ + +NGR + V + R R + +Y+ N Sbjct: 141 GFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGE 200 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +DD RL +LF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ Sbjct: 201 DMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 251 ALRVNVAEERPPRR 210 + V A+++ R+ Sbjct: 260 QIYVGRAQKKVERQ 273 Score = 65.9 bits (159), Expect = 1e-10 Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 10/136 (7%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFRI---YVGNL 438 E+A+KAV+ + ++NG+ + V +A + R E+ +D + +++ YV NL Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301 Query: 437 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 257 GRALRVNVAEERPPRR 210 + L V +A+ + R+ Sbjct: 360 TKPLYVALAQRKEERQ 375 Score = 44.7 bits (104), Expect = 2e-04 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Frame = -2 Query: 569 VEMFHRYDVNGRLLTVNKAAPRGARV-----ERPP--RDSGSSFRIYVGNLPWQVDDSRL 411 V H D L T+N +G V +R P R SG I+V NL +++ L Sbjct: 57 VNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG-NIFVKNLDKSINNKAL 115 Query: 410 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 + S G ++ VV D + S+G+GFV + E + AI ++G L GR + V Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQF 173 Query: 230 EERPPR 213 + R R Sbjct: 174 KSRKER 179
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 66.2 bits (160), Expect = 7e-11 Identities = 38/134 (28%), Positives = 69/134 (51%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G T E AE+A+E + +N R + V + + R + +Y+ N Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGE 200 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +DD RL ELF + G + +V+ D ++G+S+GFGFV+ E+ A+ ++G+ L G+ Sbjct: 201 DMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK 259 Query: 251 ALRVNVAEERPPRR 210 + V A+++ R+ Sbjct: 260 QIYVGRAQKKVERQ 273 Score = 64.7 bits (156), Expect = 2e-10 Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 10/136 (7%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNL 438 E+A+KAV+ + ++NG+ + V +A + R E+ +D + ++ +YV NL Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301 Query: 437 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 257 GRALRVNVAEERPPRR 210 + L V +A+ + R+ Sbjct: 360 TKPLYVALAQRKEERQ 375 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/72 (33%), Positives = 40/72 (55%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 275 DGQSLEGRALRV 240 +G L R + V Sbjct: 159 NGMLLNDRKVFV 170
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 66.2 bits (160), Expect = 7e-11 Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 6/121 (4%) Frame = -2 Query: 569 VEMFHRYDVNGRLLTVNKAAPRGARVE----RPPRDSGSSFRIYVGNLPWQVDDSRLVEL 402 V+ D + TVN R R++ RP +S +YV NLP + D L ++ Sbjct: 148 VDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKI 207 Query: 401 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEG--RALRVNVAE 228 F ++G +V ++ D+ TGR RG FV +EE +AI+AL+ EG + L V +AE Sbjct: 208 FGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLAE 267 Query: 227 E 225 E Sbjct: 268 E 268
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 65.5 bits (158), Expect = 1e-10 Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGS-SFRIYVGNLPWQVDDSRL 411 E +KA E+ +++ ++GR L V K P G R + +G ++V NL ++V +L Sbjct: 121 ESMKKAAEVLNKHSLSGRPLKV-KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKL 179 Query: 410 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 E+FS G VV A ++ D+D G+SRG G VT E AI+ +GQ L R + V + Sbjct: 180 KEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 238 Query: 230 EERPPR 213 E P+ Sbjct: 239 ERALPK 244 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +I+V NLP+ L + F+E G V+ A + + G+S+G G V S E + A Sbjct: 613 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 670 Query: 278 LDGQSLEGRALRVNV 234 ++G L GR + V + Sbjct: 671 MNGMKLSGREIDVRI 685
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 65.5 bits (158), Expect = 1e-10 Identities = 36/134 (26%), Positives = 70/134 (52%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G T E AE+A++ + +N R + V + R R + +Y+ N Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGD 200 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 ++D RL E+F ++G + +V+ D D G+S+GFGFV+ E+ A+ ++G+ + G+ Sbjct: 201 DMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGK 259 Query: 251 ALRVNVAEERPPRR 210 ++ V A+++ R+ Sbjct: 260 SMFVGRAQKKVERQ 273 Score = 63.9 bits (154), Expect = 4e-10 Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 10/136 (7%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGAR-------VERPPRDSGSSFR---IYVGNL 438 E+A+KAV+ + D+NG+ + V +A + R E+ +D + ++ +YV NL Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301 Query: 437 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 +DD RL + F G + A+V+ + GRS+GFGFV +S EE A+ ++G+ + Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 257 GRALRVNVAEERPPRR 210 + L V +A+ + R+ Sbjct: 360 TKPLYVALAQRKEERQ 375 Score = 47.0 bits (110), Expect = 5e-05 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 2/126 (1%) Frame = -2 Query: 584 EAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSRL 411 +AE+A++ + + GR + + + +R P R SG I++ NL +D+ L Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWS-------QRDPSLRKSGVG-NIFIKNLDKSIDNKAL 115 Query: 410 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 + FS G ++ +VV D + S+G+GFV +QE + AI ++G L R + V Sbjct: 116 YDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRF 173 Query: 230 EERPPR 213 + R R Sbjct: 174 KSRKER 179
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 65.5 bits (158), Expect = 1e-10 Identities = 38/120 (31%), Positives = 70/120 (58%), Gaps = 1/120 (0%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 E+A+ A+++ + + G+ + VNKA+ + D G++ I++GNL ++D+ L Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAHNKNL-----DVGAN--IFIGNLDPEIDEKLLY 117 Query: 407 ELFSEHGKVVDA-RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 + FS G ++ +++ D DTG S+G+ F+ AS + D AI A++GQ L R + V+ A Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177 Score = 58.2 bits (139), Expect = 2e-08 Identities = 32/85 (37%), Positives = 48/85 (56%) Frame = -2 Query: 485 PPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 306 P + +YVG L +V + L ELF + G VV+ + DR TG+ +G+GFV S+ Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64 Query: 305 EELDDAIAALDGQSLEGRALRVNVA 231 E+ D AI ++ L G+ +RVN A Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKA 89
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 65.1 bits (157), Expect = 2e-10 Identities = 28/63 (44%), Positives = 47/63 (74%) Frame = -2 Query: 401 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 FS +G+V++++++ DR+T RSRGFGFVT +++E + AI ++G+ L+GR + VN A+ R Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66 Query: 221 PPR 213 R Sbjct: 67 GGR 69 Score = 30.0 bits (66), Expect = 5.8 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGAR 495 G ST E A+E + +++GR +TVN+A RG R Sbjct: 31 GFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSRGGR 69
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 65.1 bits (157), Expect = 2e-10 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Frame = -2 Query: 488 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 309 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64 Query: 308 QEELDDAIAALDGQSLEGRALRVNVAE-ERPP 216 + + +DA+ A+DG L+GR LRV +A RPP Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 96
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 65.1 bits (157), Expect = 2e-10 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Frame = -2 Query: 488 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 309 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 308 QEELDDAIAALDGQSLEGRALRVNVAE-ERPP 216 + + +DA+ A+DG L+GR LRV +A RPP Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 95
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 65.1 bits (157), Expect = 2e-10 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Frame = -2 Query: 488 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 309 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 308 QEELDDAIAALDGQSLEGRALRVNVAE-ERPP 216 + + +DA+ A+DG L+GR LRV +A RPP Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 95
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 65.1 bits (157), Expect = 2e-10 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Frame = -2 Query: 488 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 309 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 308 QEELDDAIAALDGQSLEGRALRVNVAE-ERPP 216 + + +DA+ A+DG L+GR LRV +A RPP Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 95
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 65.1 bits (157), Expect = 2e-10 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Frame = -2 Query: 488 RPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 309 RPP D + V NL ++ L +F ++G+V D + DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 308 QEELDDAIAALDGQSLEGRALRVNVAE-ERPP 216 + + +DA+ A+DG L+GR LRV +A RPP Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 95
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 64.3 bits (155), Expect = 3e-10 Identities = 36/118 (30%), Positives = 64/118 (54%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 ++AEKA+ + + + + V+ A P A + RD+ +YV LP + L Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELE 142 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 143 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 200 Score = 60.1 bits (144), Expect = 5e-09 Identities = 33/82 (40%), Positives = 51/82 (62%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P +G+ + I+V NL D+S L +LF G V + +V+ D +T + +GFGFVTM + + Sbjct: 283 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 342 Query: 302 ELDDAIAALDGQSLEGRALRVN 237 E AIA+L+G L R L+V+ Sbjct: 343 EAAMAIASLNGYRLGDRVLQVS 364 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = -2 Query: 467 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 288 S + V LP + LF G++ ++V D+ TG+S G+GFV ++ + A Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96 Query: 287 IAALDGQSLEGRALRVNVA 231 I L+G L+ + ++V+ A Sbjct: 97 INTLNGLRLQTKTIKVSYA 115
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 64.3 bits (155), Expect = 3e-10 Identities = 36/118 (30%), Positives = 64/118 (54%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 ++AEKA+ + + + + V+ A P A + RD+ +YV LP + L Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELE 149 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 150 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 207 Score = 60.1 bits (144), Expect = 5e-09 Identities = 33/82 (40%), Positives = 51/82 (62%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P +G+ + I+V NL D+S L +LF G V + +V+ D +T + +GFGFVTM + + Sbjct: 290 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 349 Query: 302 ELDDAIAALDGQSLEGRALRVN 237 E AIA+L+G L R L+V+ Sbjct: 350 EAAMAIASLNGYRLGDRVLQVS 371 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = -2 Query: 467 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 288 S + V LP + LF G++ ++V D+ TG+S G+GFV ++ + A Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103 Query: 287 IAALDGQSLEGRALRVNVA 231 I L+G L+ + ++V+ A Sbjct: 104 INTLNGLRLQTKTIKVSYA 122
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 64.3 bits (155), Expect = 3e-10 Identities = 36/118 (30%), Positives = 64/118 (54%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 ++AEKA+ + + + + V+ A P A + RD+ +YV LP + L Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELE 154 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 155 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 212 Score = 60.1 bits (144), Expect = 5e-09 Identities = 33/82 (40%), Positives = 51/82 (62%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P +G+ + I+V NL D+S L +LF G V + +V+ D +T + +GFGFVTM + + Sbjct: 295 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 354 Query: 302 ELDDAIAALDGQSLEGRALRVN 237 E AIA+L+G L R L+V+ Sbjct: 355 EAAMAIASLNGYRLGDRVLQVS 376 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = -2 Query: 467 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 288 S + V LP + LF G++ ++V D+ TG+S G+GFV ++ + A Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108 Query: 287 IAALDGQSLEGRALRVNVA 231 I L+G L+ + ++V+ A Sbjct: 109 INTLNGLRLQTKTIKVSYA 127
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 63.9 bits (154), Expect = 4e-10 Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 10/144 (6%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRG-------ARVERPPRDSGSSFR- 456 G ++A +AVE + + + + V +A + R E+ +++ F+ Sbjct: 258 GFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQS 317 Query: 455 --IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 +YV NL + D +L E+FS G V ++V+ D + G S+G GFV A+ EE +A++ Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 376 Query: 281 ALDGQSLEGRALRVNVAEERPPRR 210 L G+ +E + L V +A+ + RR Sbjct: 377 QLSGKMIESKPLYVAIAQRKEDRR 400 Score = 57.8 bits (138), Expect = 3e-08 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 4/129 (3%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSS----FRIYVGNLPWQVDD 420 E A+KA+E +NG LL +K G + R RDS ++ +YV NL D Sbjct: 175 ESAQKAIEK-----LNGMLLN-DKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTD 228 Query: 419 SRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 240 L F E+GK+ A V+ D + G+S+GFGFV + ++ A+ +L+G + + V Sbjct: 229 DDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV 287 Query: 239 NVAEERPPR 213 A+++ R Sbjct: 288 GRAQKKSER 296 Score = 49.3 bits (116), Expect = 9e-06 Identities = 30/89 (33%), Positives = 46/89 (51%) Frame = -2 Query: 479 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 300 R SG+ I++ NL +D L + FS G +V +V D +G+S+G+GFV A++E Sbjct: 119 RRSGAG-NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEES 176 Query: 299 LDDAIAALDGQSLEGRALRVNVAEERPPR 213 AI L+G L + + V R R Sbjct: 177 AQKAIEKLNGMLLNDKQVYVGPFLRRQER 205
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 63.9 bits (154), Expect = 4e-10 Identities = 37/126 (29%), Positives = 66/126 (52%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G S +A+KA+ + + + + V+ A P A + RD+ +YV LP Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASI----RDAN----LYVSGLPK 134 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 + + +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G Sbjct: 135 TMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGA 194 Query: 251 ALRVNV 234 A + V Sbjct: 195 AEPITV 200 Score = 60.1 bits (144), Expect = 5e-09 Identities = 32/79 (40%), Positives = 50/79 (63%) Frame = -2 Query: 473 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 294 +G+ + I+V NL + D+S L +LF G V + +V+ D T + +GFGFVTM + +E Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339 Query: 293 DAIAALDGQSLEGRALRVN 237 AIA+L+G L R L+V+ Sbjct: 340 MAIASLNGYRLGERVLQVS 358 Score = 49.3 bits (116), Expect = 9e-06 Identities = 27/95 (28%), Positives = 44/95 (46%) Frame = -2 Query: 515 AAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSR 336 A P G + S + V LP + LF G + ++V D+ TG+S Sbjct: 21 ALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSL 80 Query: 335 GFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 G+GFV + + D AI L+G L+ + ++V+ A Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 63.9 bits (154), Expect = 4e-10 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 10/136 (7%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPR----------DSGSSFRIYVGNL 438 E A AVE + + +L V +A + R E R + +Y+ NL Sbjct: 280 EAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNL 339 Query: 437 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 VDD +L E+FSE+G V ++V+ + G SRGFGFV ++ EE A++ ++G+ + Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIG 398 Query: 257 GRALRVNVAEERPPRR 210 + L + +A+ + RR Sbjct: 399 RKPLYIALAQRKEDRR 414 Score = 48.5 bits (114), Expect = 2e-05 Identities = 34/125 (27%), Positives = 57/125 (45%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 E A+ A++ + +N + + V R R + +YV NLP ++ + L Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELR 246 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 228 + F + G V+ + VV +G SR FGFV E A+ ++G SL L V A+ Sbjct: 247 KTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQ 305 Query: 227 ERPPR 213 ++ R Sbjct: 306 KKSER 310 Score = 47.4 bits (111), Expect = 3e-05 Identities = 25/72 (34%), Positives = 39/72 (54%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 I++ NL +D+ L E FS G ++ +V D TGRS+G+GFV +E AI L Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 275 DGQSLEGRALRV 240 +G + + + V Sbjct: 197 NGMLMNDKQVFV 208 Score = 40.0 bits (92), Expect = 0.006 Identities = 23/82 (28%), Positives = 43/82 (52%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 +Y G+L +V ++ L +LF VV RV D++ RS G+ ++ ++ + A+ AL Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109 Query: 275 DGQSLEGRALRVNVAEERPPRR 210 + L R +R+ ++ P R Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTR 131
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 63.9 bits (154), Expect = 4e-10 Identities = 36/118 (30%), Positives = 64/118 (54%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 ++AEKA+ + + + + V+ A P A + RD+ +YV LP + L Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELE 142 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 60.5 bits (145), Expect = 4e-09 Identities = 32/82 (39%), Positives = 50/82 (60%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + + Sbjct: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328 Query: 302 ELDDAIAALDGQSLEGRALRVN 237 E AIA+L+G L R L+V+ Sbjct: 329 EAAMAIASLNGYRLGDRVLQVS 350 Score = 47.0 bits (110), Expect = 5e-05 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%) Frame = -2 Query: 482 PRDSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 315 P DSG S + LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 28 PVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Query: 314 ASQEELDDAIAALDGQSLEGRALRVNVA 231 ++ + AI L+G L+ + ++V+ A Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 63.9 bits (154), Expect = 4e-10 Identities = 36/118 (30%), Positives = 64/118 (54%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 ++AEKA+ + + + + V+ A P A + RD+ +YV LP + L Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELE 142 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 60.5 bits (145), Expect = 4e-09 Identities = 32/82 (39%), Positives = 50/82 (60%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + + Sbjct: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328 Query: 302 ELDDAIAALDGQSLEGRALRVN 237 E AIA+L+G L R L+V+ Sbjct: 329 EAAMAIASLNGYRLGDRVLQVS 350 Score = 49.7 bits (117), Expect = 7e-06 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Frame = -2 Query: 482 PRDSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 315 P DSG S + V LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 28 PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Query: 314 ASQEELDDAIAALDGQSLEGRALRVNVA 231 ++ + AI L+G L+ + ++V+ A Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 63.9 bits (154), Expect = 4e-10 Identities = 36/118 (30%), Positives = 64/118 (54%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 ++AEKA+ + + + + V+ A P A + RD+ +YV LP + L Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELE 142 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 60.5 bits (145), Expect = 4e-09 Identities = 32/82 (39%), Positives = 50/82 (60%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + + Sbjct: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328 Query: 302 ELDDAIAALDGQSLEGRALRVN 237 E AIA+L+G L R L+V+ Sbjct: 329 EAAMAIASLNGYRLGDRVLQVS 350 Score = 49.7 bits (117), Expect = 7e-06 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Frame = -2 Query: 482 PRDSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 315 P DSG S + V LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 28 PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Query: 314 ASQEELDDAIAALDGQSLEGRALRVNVA 231 ++ + AI L+G L+ + ++V+ A Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 63.9 bits (154), Expect = 4e-10 Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Frame = -2 Query: 584 EAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 405 ++++A+++ + V + L V+ A P G ++ +YV NLP + D +L Sbjct: 178 DSQRAIKVLNGITVRNKRLKVSYARPGGESIK--------DTNLYVTNLPRTITDDQLDT 229 Query: 404 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEG--RALRVNVA 231 +F ++G +V ++ D+ TGR RG FV +EE +AI+AL+ EG + L V +A Sbjct: 230 IFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 289 Query: 230 EE 225 EE Sbjct: 290 EE 291
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 63.9 bits (154), Expect = 4e-10 Identities = 36/118 (30%), Positives = 64/118 (54%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 ++AEKA+ + + + + V+ A P A + RD+ +YV LP + L Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASI----RDAN----LYVSGLPKTMTQKELE 142 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G + V Sbjct: 143 QLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 60.5 bits (145), Expect = 4e-09 Identities = 32/82 (39%), Positives = 50/82 (60%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + + Sbjct: 270 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 329 Query: 302 ELDDAIAALDGQSLEGRALRVN 237 E AIA+L+G L R L+V+ Sbjct: 330 EAAMAIASLNGYRLGDRVLQVS 351 Score = 49.7 bits (117), Expect = 7e-06 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Frame = -2 Query: 482 PRDSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 315 P DSG S + V LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 28 PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Query: 314 ASQEELDDAIAALDGQSLEGRALRVNVA 231 ++ + AI L+G L+ + ++V+ A Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 63.5 bits (153), Expect = 5e-10 Identities = 37/126 (29%), Positives = 66/126 (52%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G S +A+KA+ + + + + V+ A P A + RD+ +YV LP Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASI----RDAN----LYVSGLPK 134 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 + + +LFS++G+++ +R++ D+ TG SRG GF+ + E ++AI L+GQ G Sbjct: 135 TMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGA 194 Query: 251 ALRVNV 234 A + V Sbjct: 195 AEPITV 200 Score = 60.1 bits (144), Expect = 5e-09 Identities = 32/79 (40%), Positives = 50/79 (63%) Frame = -2 Query: 473 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 294 +G+ + I+V NL + D+S L +LF G V + +V+ D T + +GFGFVTM + +E Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339 Query: 293 DAIAALDGQSLEGRALRVN 237 AIA+L+G L R L+V+ Sbjct: 340 MAIASLNGYRLGERVLQVS 358 Score = 49.3 bits (116), Expect = 9e-06 Identities = 27/95 (28%), Positives = 44/95 (46%) Frame = -2 Query: 515 AAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSR 336 A P G + S + V LP + LF G + ++V D+ TG+S Sbjct: 21 ALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSL 80 Query: 335 GFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 G+GFV + + D AI L+G L+ + ++V+ A Sbjct: 81 GYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 63.5 bits (153), Expect = 5e-10 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%) Frame = -2 Query: 551 YDVNGRLLTVNKAAPRGARVER----------PPRDSGSSFRIYVGNLPWQVDDSRLVEL 402 + ++GR + PRG + ER P DS S +I+VG +P ++ L E Sbjct: 73 HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREY 132 Query: 401 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 F + G V + ++YD + R RGFGF+T ++ +D A+ + + G+ + V AE R Sbjct: 133 FKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 191 Score = 50.4 bits (119), Expect = 4e-06 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +++VG L W L FS++G+VVD ++ D+ T +SRGFGFV + +A+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 278 ----LDGQSLE 258 LDG++++ Sbjct: 71 RPHTLDGRNID 81
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 63.5 bits (153), Expect = 5e-10 Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 ++ A +A+ + +N R + V + P E RD + ++V N+ +DD Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDE 213 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S++G+ L V Sbjct: 214 KLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 Query: 236 VAEERPPR 213 A+++ R Sbjct: 273 RAQKKIER 280
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 63.5 bits (153), Expect = 5e-10 Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 ++ A +A+ + +N R + V + P E RD + ++V N+ +DD Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDE 213 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S++G+ L V Sbjct: 214 KLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 Query: 236 VAEERPPR 213 A+++ R Sbjct: 273 RAQKKIER 280
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 63.5 bits (153), Expect = 5e-10 Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 ++ A +A+ + +N R + V + P E RD + ++V N+ +DD Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDE 213 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S++G+ L V Sbjct: 214 KLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 Query: 236 VAEERPPR 213 A+++ R Sbjct: 273 RAQKKIER 280
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 63.5 bits (153), Expect = 5e-10 Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 ++ A +A+ + +N R + V + P E RD + ++V N+ +DD Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDE 213 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S++G+ L V Sbjct: 214 KLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 Query: 236 VAEERPPR 213 A+++ R Sbjct: 273 RAQKKIER 280
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 63.5 bits (153), Expect = 5e-10 Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 ++ A +A+ + +N R + V + P E RD + ++V N+ +DD Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDE 213 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S++G+ L V Sbjct: 214 KLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 Query: 236 VAEERPPR 213 A+++ R Sbjct: 273 RAQKKIER 280
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 63.5 bits (153), Expect = 5e-10 Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAA-PRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 ++ A +A+ + +N R + V + P E RD + ++V N+ +DD Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDE 213 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 +L ELF E+G +V+ D +G+S+GFGFV + E A+ L G+S++G+ L V Sbjct: 214 KLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVG 272 Query: 236 VAEERPPR 213 A+++ R Sbjct: 273 RAQKKIER 280
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 63.5 bits (153), Expect = 5e-10 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 2/122 (1%) Frame = -2 Query: 584 EAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 405 +A+ A++ + V + L V+ A P G ++ +YV NLP + D L + Sbjct: 138 DAQNAIKSLNGVTVRNKRLKVSYARPGGESIK--------DTNLYVTNLPRTITDDELEK 189 Query: 404 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEG--RALRVNVA 231 +F ++G +V ++ D+ TG+ RG FV +EE +AI+AL+ EG + L V +A Sbjct: 190 IFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLA 249 Query: 230 EE 225 EE Sbjct: 250 EE 251
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 63.2 bits (152), Expect = 6e-10 Identities = 31/86 (36%), Positives = 50/86 (58%) Frame = -2 Query: 479 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 300 + +G R+YVG+L + + + L +F GK+ + ++ D DTGRS+G+GF+T + E Sbjct: 257 KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSEC 316 Query: 299 LDDAIAALDGQSLEGRALRVNVAEER 222 A+ L+G L GR +RV ER Sbjct: 317 ARRALEQLNGFELAGRPMRVGHVTER 342 Score = 37.4 bits (85), Expect = 0.036 Identities = 23/67 (34%), Positives = 35/67 (52%) Frame = -2 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 L + FS GKV D R++ DR++ RS+G +V + + AI L GQ L G + V Sbjct: 182 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 240 Query: 233 AEERPPR 213 ++ R Sbjct: 241 SQAEKNR 247
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 62.8 bits (151), Expect = 8e-10 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 4/134 (2%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +I+VG LP+ D+ L + F G + +A V+ DR TG+SRG+GFVTMA + D A Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 278 LDGQSLEGRALRVNVAE-ERPPRRF**KY---IWRCTTTRLLRKRHDSTPDTGLDPIIIL 111 ++GR VN+A PR + + + T L+++ + TP P I+ Sbjct: 93 -PNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPT-LIQRTYGLTPHYIYPPAIVQ 150 Query: 110 PSILVPCMSPLSTL 69 PS+++P +P+ +L Sbjct: 151 PSVVIPA-TPVPSL 163
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 62.8 bits (151), Expect = 8e-10 Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Frame = -2 Query: 584 EAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 405 ++++A+++ + V + L V+ A P G ++ +YV NLP + D +L Sbjct: 180 DSQRAIKVLNGITVRNKRLKVSYARPGGESIK--------DTNLYVTNLPRTITDDQLDT 231 Query: 404 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEG--RALRVNVA 231 +F ++G +V ++ D+ TGR RG FV +EE +AI+AL+ EG + L V +A Sbjct: 232 IFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 291 Query: 230 EE 225 +E Sbjct: 292 QE 293
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 62.8 bits (151), Expect = 8e-10 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 10/136 (7%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPR----------DSGSSFRIYVGNL 438 E A+KAV+ + + G+ L V +A + R E + + +++ NL Sbjct: 312 ECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNL 371 Query: 437 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 +VDD RL FS G + A+++ D + G+S+GFGFV + EE + A+ ++ + L Sbjct: 372 QDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLA 430 Query: 257 GRALRVNVAEERPPRR 210 G+ L V +A+ + RR Sbjct: 431 GKPLYVALAQRKEVRR 446 Score = 53.1 bits (126), Expect = 6e-07 Identities = 32/133 (24%), Positives = 63/133 (47%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G ++E A A+E + +N + + V R R + + +Y+ NL Sbjct: 211 GFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDT 270 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 ++ + +LF + G++ +V D++ + RGFGFV A+ E A+ L+ + +G+ Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKDQN-DKPRGFGFVNYANHECAQKAVDELNDKEYKGK 329 Query: 251 ALRVNVAEERPPR 213 L V A+++ R Sbjct: 330 KLYVGRAQKKHER 342 Score = 49.7 bits (117), Expect = 7e-06 Identities = 30/95 (31%), Positives = 48/95 (50%) Frame = -2 Query: 494 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 315 V P + +S +YVG L V ++ L ELF+ G V RV D T RS G+ +V Sbjct: 69 VATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF 128 Query: 314 ASQEELDDAIAALDGQSLEGRALRVNVAEERPPRR 210 + E+ + A+ L+ ++GR R+ ++ P R Sbjct: 129 HNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLR 163
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 62.8 bits (151), Expect = 8e-10 Identities = 26/76 (34%), Positives = 51/76 (67%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++G L + ++ L +F ++G++V+ ++ DR+T +SRGF FVT S + DA Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 278 LDGQSLEGRALRVNVA 231 ++G+SL+G+A++V A Sbjct: 69 MNGKSLDGKAIKVEQA 84
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 62.8 bits (151), Expect = 8e-10 Identities = 26/76 (34%), Positives = 52/76 (68%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++G L + ++ L +F ++G++V+ ++ DR+T +SRGF FVT+ S + DA Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 278 LDGQSLEGRALRVNVA 231 ++G+SL+G+A++V A Sbjct: 69 MNGKSLDGKAIKVEQA 84
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 62.4 bits (150), Expect = 1e-09 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 10/120 (8%) Frame = -2 Query: 551 YDVNGRLLTVNKAAPRGARVER----------PPRDSGSSFRIYVGNLPWQVDDSRLVEL 402 + ++GR + PRG + ER P D+ S +I+VG +P ++ L E Sbjct: 73 HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREY 132 Query: 401 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 F + G V + ++YD + R RGFGF+T ++ +D A+ + + G+ + V AE R Sbjct: 133 FKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR 191 Score = 50.4 bits (119), Expect = 4e-06 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +++VG L W L FS++G+VVD ++ D+ T +SRGFGFV + +A+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 278 ----LDGQSLE 258 LDG++++ Sbjct: 71 RPHTLDGRNID 81
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 62.0 bits (149), Expect = 1e-09 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Frame = -2 Query: 584 EAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 405 ++++A++ + V + L V+ A P G ++ +YV NLP + D +L Sbjct: 163 DSQRAIKSLNGITVRNKRLKVSYARPGGESIK--------DTNLYVTNLPRTITDDQLDT 214 Query: 404 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEG--RALRVNVA 231 +F ++G +V ++ D+ TG+ RG FV +EE +AI+AL+ EG + L V +A Sbjct: 215 IFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLA 274 Query: 230 EE 225 EE Sbjct: 275 EE 276
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 61.6 bits (148), Expect = 2e-09 Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 4/112 (3%) Frame = -2 Query: 545 VNGRLLTVNKAAPRGARVERPPRDSGSSF----RIYVGNLPWQVDDSRLVELFSEHGKVV 378 V+G + AAP + + P ++ S R++V N+P++ D L ++F + GK++ Sbjct: 84 VSGTATQTDDAAPTDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL 143 Query: 377 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 D ++++ S+GFGFVT + + D A L G +EGR + VN A R Sbjct: 144 DVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 193
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 61.2 bits (147), Expect = 2e-09 Identities = 31/100 (31%), Positives = 55/100 (55%) Frame = -2 Query: 521 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 342 N+AA +++ S R+YVG+L + + + L +F G++ +++ D +TGR Sbjct: 233 NRAAAMANNLQK---GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289 Query: 341 SRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 S+G+GF+T + E A+ L+G L GR ++V ER Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329 Score = 40.0 bits (92), Expect = 0.006 Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 15/117 (12%) Frame = -2 Query: 518 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV---------------ELFSEHGK 384 K + R +R + P R S R + NL + D+R V E FS GK Sbjct: 119 KLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGK 178 Query: 383 VVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEERPPR 213 V D R++ DR++ RSRG +V + AI L GQ + G + V ++ R Sbjct: 179 VRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAI-GLTGQRVLGVPIIVQASQAEKNR 234
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 61.2 bits (147), Expect = 2e-09 Identities = 31/100 (31%), Positives = 55/100 (55%) Frame = -2 Query: 521 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 342 N+AA +++ S R+YVG+L + + + L +F G++ +++ D +TGR Sbjct: 233 NRAAAMANNLQK---GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 289 Query: 341 SRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 S+G+GF+T + E A+ L+G L GR ++V ER Sbjct: 290 SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329 Score = 39.3 bits (90), Expect = 0.010 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 15/117 (12%) Frame = -2 Query: 518 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV---------------ELFSEHGK 384 K + R +R + P R S R + NL + D+R V E FS GK Sbjct: 119 KLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGK 178 Query: 383 VVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEERPPR 213 V D R++ DR++ RS+G +V + AI L GQ + G + V ++ R Sbjct: 179 VRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNR 234
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 61.2 bits (147), Expect = 2e-09 Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 4/134 (2%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +I+VG LP+ D+ L + F G + +A V+ DR TG+SRG+GFVTMA + + A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 278 LDGQSLEGRALRVNVAE-ERPPRRF**KY---IWRCTTTRLLRKRHDSTPDTGLDPIIIL 111 ++GR VN+A PR + + + T L+++ + TP P I+ Sbjct: 72 -PNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPT-LIQRTYGLTPHYIYPPAIVQ 129 Query: 110 PSILVPCMSPLSTL 69 PS+++P +P+ +L Sbjct: 130 PSVVIPA-APVPSL 142
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 60.8 bits (146), Expect = 3e-09 Identities = 25/76 (32%), Positives = 50/76 (65%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++G L + ++ L +F ++G++V+ ++ DR+T +SRGF FVT S + D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 278 LDGQSLEGRALRVNVA 231 ++G+SL+G+A++V A Sbjct: 69 MNGKSLDGKAIKVEQA 84
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 60.5 bits (145), Expect = 4e-09 Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 4/112 (3%) Frame = -2 Query: 545 VNGRLLTVNKAAPRGARVERPPRDSGSSF----RIYVGNLPWQVDDSRLVELFSEHGKVV 378 V+G + AAP + + P ++ + R++V N+P++ D L ++F + GK++ Sbjct: 85 VSGTATQADDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL 144 Query: 377 DARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 D ++++ S+GFGFVT + + D A L G +EGR + VN A R Sbjct: 145 DVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 194
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 60.5 bits (145), Expect = 4e-09 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 11/121 (9%) Frame = -2 Query: 551 YDVNGRLLTVNKAAPRGARVER-----------PPRDSGSSFRIYVGNLPWQVDDSRLVE 405 + ++GR + PRG + ER P ++ S +I+VG +P ++ L E Sbjct: 73 HTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKE 132 Query: 404 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEE 225 F+ G V + ++YD + R RGFGF+T ++ +D A+ + + G+ + V AE Sbjct: 133 YFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEP 191 Query: 224 R 222 R Sbjct: 192 R 192 Score = 50.4 bits (119), Expect = 4e-06 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +++VG L W L FS++G+VVD ++ D+ T +SRGFGFV + +A+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 278 ----LDGQSLE 258 LDG++++ Sbjct: 71 RPHTLDGRNID 81
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 59.3 bits (142), Expect = 9e-09 Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 4/111 (3%) Frame = -2 Query: 542 NGRLLTVNKAAPRGARVERPPRDSGSSF----RIYVGNLPWQVDDSRLVELFSEHGKVVD 375 NG L T A G + + ++ S R++V N+P++ D L ++F + GK++D Sbjct: 90 NGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILD 149 Query: 374 ARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 ++++ S+GFGFVT + + D A L G +EGR + VN A R Sbjct: 150 VEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 198
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 58.9 bits (141), Expect = 1e-08 Identities = 30/82 (36%), Positives = 50/82 (60%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P ++ S + I++ NL D+ L ++F G V + +V+ D +T + +GFGFVTM + E Sbjct: 237 PGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296 Query: 302 ELDDAIAALDGQSLEGRALRVN 237 E AIA+L+G L + L+V+ Sbjct: 297 EAAMAIASLNGYRLGDKILQVS 318 Score = 55.8 bits (133), Expect = 1e-07 Identities = 29/120 (24%), Positives = 60/120 (50%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 414 T ++AE+A+ + + + + V+ A RP + +Y+ LP + Sbjct: 70 TAKDAERAINTLNGLRLQSKTIKVSYA--------RPSSEVIKDANLYISGLPRTMTQKD 121 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 + ++FS G+++++RV+ D+ TG SRG F+ + E ++AI + +G G + + V Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181 Score = 48.5 bits (114), Expect = 2e-05 Identities = 24/75 (32%), Positives = 42/75 (56%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 + V LP + L LFS G+V A+++ D+ G S G+GFV + ++ + AI L Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 Query: 275 DGQSLEGRALRVNVA 231 +G L+ + ++V+ A Sbjct: 82 NGLRLQSKTIKVSYA 96
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 58.5 bits (140), Expect = 2e-08 Identities = 30/82 (36%), Positives = 50/82 (60%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P ++ S + I++ NL D+ L ++F G V + +V+ D +T + +GFGFVTM + E Sbjct: 237 PGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296 Query: 302 ELDDAIAALDGQSLEGRALRVN 237 E AIA+L+G L + L+V+ Sbjct: 297 ESAMAIASLNGYRLGDKILQVS 318 Score = 54.3 bits (129), Expect = 3e-07 Identities = 29/120 (24%), Positives = 59/120 (49%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 414 T ++AE+A+ + + + + V+ A RP + +Y+ LP + Sbjct: 70 TAKDAERAISTLNGLRLQSKTIKVSYA--------RPSSEVIKDANLYISGLPRTMTQKD 121 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 + ++FS G+++++RV+ D+ TG SRG F+ + E ++AI + G G + + V Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITV 181 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/75 (32%), Positives = 43/75 (57%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 + V LP + L LFS G+V A+++ D+ G S G+GFV + ++ + AI+ L Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81 Query: 275 DGQSLEGRALRVNVA 231 +G L+ + ++V+ A Sbjct: 82 NGLRLQSKTIKVSYA 96
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 58.5 bits (140), Expect = 2e-08 Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Frame = -2 Query: 473 SGSSFRIYVGNLPWQVDDSRLVELF-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 297 SG++ I+VG+L V +S+L ELF + + A++V+D+ TG S+G+GFV + +E Sbjct: 159 SGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQ 218 Query: 296 DDAIAALDGQSLEGRALRV 240 A++ + G L GRA++V Sbjct: 219 QLALSEMQGVFLNGRAIKV 237
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 58.5 bits (140), Expect = 2e-08 Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 6/121 (4%) Frame = -2 Query: 566 EMFHRYDVNGRLLTVNKAAPRGA--RVERPPRDSGSSFRI----YVGNLPWQVDDSRLVE 405 E H DV +N+ G RV R +D G + I +VGNL VD+ L + Sbjct: 58 EFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYD 117 Query: 404 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEE 225 FS G++V A V + GRS+G+GFV+ S E D AI A++ Q L + + V+ A + Sbjct: 118 TFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFK 177 Query: 224 R 222 R Sbjct: 178 R 178 Score = 50.1 bits (118), Expect = 5e-06 Identities = 29/84 (34%), Positives = 43/84 (51%) Frame = -2 Query: 476 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 297 D IY+GNL +V DS L EL + G VV+ + DR GFGF ++++ Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65 Query: 296 DDAIAALDGQSLEGRALRVNVAEE 225 + A L+ L G+ +RVN A + Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQ 89
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 58.2 bits (139), Expect = 2e-08 Identities = 36/125 (28%), Positives = 66/125 (52%) Frame = -2 Query: 596 STIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 ++ E+A++A+ ++ ++ GR + + PRG+ P S S ++V L + Sbjct: 530 ASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEE 585 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 L E F V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ Sbjct: 586 TLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 642 Query: 236 VAEER 222 A+ + Sbjct: 643 WAKPK 647 Score = 51.2 bits (121), Expect = 2e-06 Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 3/124 (2%) Frame = -2 Query: 584 EAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDS---GSSFRIYVGNLPWQVDDSR 414 +AEK +E +++GR +++ +G R ER ++S G S + + NL + + Sbjct: 441 DAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEET 500 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 L E+F + + V G+S+G+ F+ AS E+ +A+ + + +EGR +R+ + Sbjct: 501 LQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 556 Query: 233 AEER 222 R Sbjct: 557 QGPR 560 Score = 34.7 bits (78), Expect = 0.23 Identities = 28/134 (20%), Positives = 60/134 (44%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G + E+ EKA+E+ V G + + K R ++ R R + NL + Sbjct: 350 GYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGRDSKKVRAART------LLAKNLSF 402 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 + + L E+F + ++ R+V G+S+G ++ S+ + + + G ++GR Sbjct: 403 NITEDELKEVFED---ALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 457 Query: 251 ALRVNVAEERPPRR 210 ++ + E+ R+ Sbjct: 458 SVSLYYTGEKGQRQ 471
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 58.2 bits (139), Expect = 2e-08 Identities = 36/125 (28%), Positives = 66/125 (52%) Frame = -2 Query: 596 STIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 ++ E+A++A+ ++ ++ GR + + PRG+ P S S ++V L + Sbjct: 533 ASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEE 588 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 L E F V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ Sbjct: 589 TLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 645 Query: 236 VAEER 222 A+ + Sbjct: 646 WAKPK 650 Score = 50.4 bits (119), Expect = 4e-06 Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 3/124 (2%) Frame = -2 Query: 584 EAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDS---GSSFRIYVGNLPWQVDDSR 414 +AEK +E +++GR +++ +G R ER ++S G S + + NL + + Sbjct: 444 DAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEET 503 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 L E+F + + V G+S+G+ F+ AS E+ +A+ + + +EGR +R+ + Sbjct: 504 LQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 559 Query: 233 AEER 222 R Sbjct: 560 QGPR 563 Score = 37.0 bits (84), Expect = 0.047 Identities = 30/134 (22%), Positives = 60/134 (44%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G + E+ EKA+E+ V G + + K R ++ R R + NL + Sbjct: 353 GYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGRDSKKVRAART------LLAKNLSF 405 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 + + L E+F + V+ R+V GRS+G ++ S+ + + + G ++GR Sbjct: 406 NITEDELKEVFED---AVEIRLV--SQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 460 Query: 251 ALRVNVAEERPPRR 210 ++ + E+ R+ Sbjct: 461 SVSLYYTGEKGQRQ 474
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 57.8 bits (138), Expect = 3e-08 Identities = 36/125 (28%), Positives = 66/125 (52%) Frame = -2 Query: 596 STIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 ++ E+A++A+ ++ ++ GR + + PRG+ P S S ++V L + Sbjct: 532 ASFEDAKEALNSCNKREIEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEE 587 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 L E F V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ Sbjct: 588 TLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 644 Query: 236 VAEER 222 A+ + Sbjct: 645 WAKPK 649 Score = 47.4 bits (111), Expect = 3e-05 Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 12/162 (7%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVE----RPPRDSGSSFRIYVGNLPWQV 426 T +AEK E +++GR +++ +G + + SG S + + NL + Sbjct: 439 TEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSA 498 Query: 425 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 246 + L E+F + + V G+S+G+ F+ AS E+ +A+ + + + +EGRA+ Sbjct: 499 TEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 554 Query: 245 RVNV--------AEERPPRRF**KYIWRCTTTRLLRKRHDST 144 R+ + A +P + K + TT L++ D + Sbjct: 555 RLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS 596 Score = 37.4 bits (85), Expect = 0.036 Identities = 28/130 (21%), Positives = 59/130 (45%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G + E+ EKA+E+ V G + + K + ++ ER R + NLP+ Sbjct: 351 GYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKKERDART------LLAKNLPY 403 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +V L E+F + ++ R+V G+S+G ++ ++ + + G ++GR Sbjct: 404 KVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGR 458 Query: 251 ALRVNVAEER 222 ++ + E+ Sbjct: 459 SISLYYTGEK 468 Score = 35.0 bits (79), Expect = 0.18 Identities = 27/93 (29%), Positives = 45/93 (48%) Frame = -2 Query: 518 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 339 KAAP + + + ++F ++VGNL + L S+ D VV D G + Sbjct: 289 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMT 347 Query: 338 RGFGFVTMASQEELDDAIAALDGQSLEGRALRV 240 R FG+V S E+L+ A+ L G + G +++ Sbjct: 348 RKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 379
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 57.8 bits (138), Expect = 3e-08 Identities = 36/125 (28%), Positives = 66/125 (52%) Frame = -2 Query: 596 STIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 ++ E+A++A+ ++ ++ GR + + PRG+ P S S ++V L + Sbjct: 531 ASFEDAKEALNSCNKREIEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEE 586 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 L E F V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ Sbjct: 587 TLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 643 Query: 236 VAEER 222 A+ + Sbjct: 644 WAKPK 648 Score = 47.4 bits (111), Expect = 3e-05 Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 12/162 (7%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVE----RPPRDSGSSFRIYVGNLPWQV 426 T +AEK E +++GR +++ +G + + SG S + + NL + Sbjct: 438 TEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSA 497 Query: 425 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 246 + L E+F + + V G+S+G+ F+ AS E+ +A+ + + + +EGRA+ Sbjct: 498 TEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 553 Query: 245 RVNV--------AEERPPRRF**KYIWRCTTTRLLRKRHDST 144 R+ + A +P + K + TT L++ D + Sbjct: 554 RLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS 595 Score = 37.4 bits (85), Expect = 0.036 Identities = 28/130 (21%), Positives = 59/130 (45%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G + E+ EKA+E+ V G + + K + ++ ER R + NLP+ Sbjct: 350 GYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKKERDART------LLAKNLPY 402 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +V L E+F + ++ R+V G+S+G ++ ++ + + G ++GR Sbjct: 403 KVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGR 457 Query: 251 ALRVNVAEER 222 ++ + E+ Sbjct: 458 SISLYYTGEK 467 Score = 35.0 bits (79), Expect = 0.18 Identities = 27/93 (29%), Positives = 45/93 (48%) Frame = -2 Query: 518 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 339 KAAP + + + ++F ++VGNL + L S+ D VV D G + Sbjct: 288 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMT 346 Query: 338 RGFGFVTMASQEELDDAIAALDGQSLEGRALRV 240 R FG+V S E+L+ A+ L G + G +++ Sbjct: 347 RKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 378
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 57.8 bits (138), Expect = 3e-08 Identities = 36/125 (28%), Positives = 66/125 (52%) Frame = -2 Query: 596 STIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 ++ E+A++A+ ++ ++ GR + + PRG+ P S S ++V L + Sbjct: 530 ASFEDAKEALNSCNKREIEGRAIRLELQGPRGS----PNARSQPSKTLFVKGLSEDTTEE 585 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 L E F V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ Sbjct: 586 TLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 642 Query: 236 VAEER 222 A+ + Sbjct: 643 WAKPK 647 Score = 47.4 bits (111), Expect = 3e-05 Identities = 37/162 (22%), Positives = 74/162 (45%), Gaps = 12/162 (7%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVE----RPPRDSGSSFRIYVGNLPWQV 426 T +AEK E +++GR +++ +G + + SG S + + NL + Sbjct: 437 TEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSA 496 Query: 425 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 246 + L E+F + + V G+S+G+ F+ AS E+ +A+ + + + +EGRA+ Sbjct: 497 TEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 552 Query: 245 RVNV--------AEERPPRRF**KYIWRCTTTRLLRKRHDST 144 R+ + A +P + K + TT L++ D + Sbjct: 553 RLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS 594 Score = 37.4 bits (85), Expect = 0.036 Identities = 28/130 (21%), Positives = 59/130 (45%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G + E+ EKA+E+ V G + + K + ++ ER R + NLP+ Sbjct: 349 GYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKKERDART------LLAKNLPY 401 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +V L E+F + ++ R+V G+S+G ++ ++ + + G ++GR Sbjct: 402 KVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGR 456 Query: 251 ALRVNVAEER 222 ++ + E+ Sbjct: 457 SISLYYTGEK 466 Score = 35.0 bits (79), Expect = 0.18 Identities = 27/93 (29%), Positives = 45/93 (48%) Frame = -2 Query: 518 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 339 KAAP + + + ++F ++VGNL + L S+ D VV D G + Sbjct: 287 KAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV-DVRIGMT 345 Query: 338 RGFGFVTMASQEELDDAIAALDGQSLEGRALRV 240 R FG+V S E+L+ A+ L G + G +++ Sbjct: 346 RKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 377
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 57.4 bits (137), Expect = 3e-08 Identities = 27/82 (32%), Positives = 53/82 (64%), Gaps = 1/82 (1%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 I+VG LP+++ + ++ +FS++G++V+ +V D+ TG+S+GF F+ Q A+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 275 DGQSLEGRALRV-NVAEERPPR 213 +G ++GR +RV +V+ R P+ Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPQ 119
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 57.0 bits (136), Expect = 4e-08 Identities = 31/101 (30%), Positives = 57/101 (56%) Frame = -2 Query: 596 STIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 S+++E K ++ ++G+++ +A PR + + +I+VG + V Sbjct: 211 SSVDEVVKT-----QHILDGKVIDPKRAIPRD--------EQDKTGKIFVGGIGPDVRPK 257 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 294 E FS+ G ++DA+++ D+DTG+SRGFGFVT S + +D Sbjct: 258 EFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 298 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 4/82 (4%) Frame = -2 Query: 491 ERPPRD-SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 315 ER D S S ++++G L W + L E F ++G V D +++ D TGRSRGFGF++ Sbjct: 148 ERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF 207 Query: 314 ASQEELDDAIAA---LDGQSLE 258 +D+ + LDG+ ++ Sbjct: 208 EKPSSVDEVVKTQHILDGKVID 229
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 56.6 bits (135), Expect = 6e-08 Identities = 31/121 (25%), Positives = 59/121 (48%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 ++VGN+P+ V + ++ E+F++ G V ++V D +TG +G+GF E A+ L Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 275 DGQSLEGRALRVNVAEERPPRRF**KYIWRCTTTRLLRKRHDSTPDTGLDPIIILPSILV 96 + L R +RV P R +Y R + H+S+ ++ P ++ + + Sbjct: 69 NNSELGPRKIRVEFPSNDPRRNQSYEYTERTDRYMEQQNAHESSYNSRFIPPVLHSTSSL 128 Query: 95 P 93 P Sbjct: 129 P 129
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 56.6 bits (135), Expect = 6e-08 Identities = 26/82 (31%), Positives = 53/82 (64%), Gaps = 1/82 (1%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 I++G LP+++ + ++ +FS++G++V+ +V D+ TG+S+GF F+ Q A+ Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 275 DGQSLEGRALRV-NVAEERPPR 213 +G ++GR +RV +V+ R P+ Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPK 119
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 56.2 bits (134), Expect = 8e-08 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 1/132 (0%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP-RDSGSSFRIYVGNLP 435 G T E+A A+ + ++G L + + +G + SG S +I + NLP Sbjct: 666 GFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKSSKIIIKNLP 725 Query: 434 WQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEG 255 ++ L+ELF G++ RV D +RGF FV +E + A++ L+G L G Sbjct: 726 FEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAETAMSQLEGVHLLG 784 Query: 254 RALRVNVAEERP 219 R L + AE+ P Sbjct: 785 RRLVMQYAEQDP 796 Score = 52.4 bits (124), Expect = 1e-06 Identities = 23/83 (27%), Positives = 46/83 (55%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 R+++ N+ ++ + LFS++G + + + D TG+S+GF +V +E+ A + Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 278 LDGQSLEGRALRVNVAEERPPRR 210 LD Q +GR L + A+++ R Sbjct: 371 LDKQIFQGRLLHILPADKKKDHR 393 Score = 38.5 bits (88), Expect = 0.016 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%) Frame = -2 Query: 470 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRD---TGR--SRGFGFVTMASQ 306 G + ++V NL + L +LF V A V D +G+ S GFGFV ++ Sbjct: 614 GPTVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTK 673 Query: 305 EELDDAIAALDGQSLEGRALRVNVAEER 222 E+ + AI+ LDG L+G L++ ++ ++ Sbjct: 674 EQANVAISTLDGHVLDGHKLQLKLSHKQ 701
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 55.8 bits (133), Expect = 1e-07 Identities = 31/91 (34%), Positives = 51/91 (56%) Frame = -2 Query: 494 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM 315 +ER R+ ++++G L ++ + L + + GK+ D V+ D + RSRGFGFVT Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69 Query: 314 ASQEELDDAIAALDGQSLEGRALRVNVAEER 222 +S E+D A+AA S++GR + A R Sbjct: 70 SSMAEVDAAMAARP-HSIDGRVVEPKRAVAR 99 Score = 49.7 bits (117), Expect = 7e-06 Identities = 27/109 (24%), Positives = 54/109 (49%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G S++ E + A+ + ++GR++ +A R P + +++VG + Sbjct: 65 GFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKE 121 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L + F E+GK+ ++ DR +G+ RGFGFVT + +D + Sbjct: 122 DTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/90 (31%), Positives = 44/90 (48%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 PR ++YVGNLP V + + ++F ++G++ D +GR F FV Sbjct: 2 PRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIK----YVDIKSGRGPAFAFVEFEDHR 57 Query: 302 ELDDAIAALDGQSLEGRALRVNVAEERPPR 213 + +DA+ A DG +GR +RV PR Sbjct: 58 DAEDAVRARDGYEFDGRRIRVEFTRGVGPR 87
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 4/79 (5%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P++ ++++G L ++ D L E F + GK+ D V+ D T RSRGFGFVT + E Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 302 ELDDAIAA----LDGQSLE 258 E+D +++A +DG+ +E Sbjct: 80 EVDASMSARPHKVDGRVVE 98 Score = 45.8 bits (107), Expect = 1e-04 Identities = 28/109 (25%), Positives = 52/109 (47%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G S +EE + ++ + V+GR++ +A R P + +I+VG + Sbjct: 71 GFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSAR--PGAHLTVKKIFVGGIKE 127 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L + F +GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 128 DTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 55.5 bits (132), Expect = 1e-07 Identities = 35/87 (40%), Positives = 49/87 (56%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P S F +VGNL + + ++ L + F E V R+V D T RSRGFG+V + + Sbjct: 87 PIPSEPPFTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETAD 144 Query: 302 ELDDAIAALDGQSLEGRALRVNVAEER 222 L A+ AL G+ L GR +R+ VAE R Sbjct: 145 TLSAAL-ALSGEDLMGRPVRITVAEPR 170
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 4/79 (5%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P++ ++++G L ++ D L E F + GK+ D V+ D T RSRGFGFVT + E Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 302 ELDDAIAA----LDGQSLE 258 E+D +++A +DG+ +E Sbjct: 80 EVDASMSARPHKVDGRVVE 98 Score = 43.5 bits (101), Expect = 5e-04 Identities = 27/109 (24%), Positives = 51/109 (46%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G S +EE + ++ + V+GR++ +A R P + +I+VG + Sbjct: 71 GFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSAR--PGAHLTVKKIFVGGIKE 127 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L + +GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 128 DTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 55.5 bits (132), Expect = 1e-07 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 10/136 (7%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPR----------DSGSSFRIYVGNL 438 E A AVE + + +L V +A + R E R + +Y+ NL Sbjct: 276 EAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNL 335 Query: 437 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 V+D +L E+FSE+G V +V+ + G SRGFGFV ++ EE A+ ++G+ + Sbjct: 336 DDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIG 394 Query: 257 GRALRVNVAEERPPRR 210 + L V +A+ + R+ Sbjct: 395 RKPLYVALAQRKEERQ 410 Score = 54.3 bits (129), Expect = 3e-07 Identities = 37/125 (29%), Positives = 60/125 (48%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 E A+ A++ + +N + + V R R S +YV NLP ++ D L Sbjct: 183 ETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELK 242 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 228 + F ++G + A V+ D+ +G SR FGFV S E A+ ++G SL L V A+ Sbjct: 243 KTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQ 301 Query: 227 ERPPR 213 ++ R Sbjct: 302 KKSDR 306 Score = 46.6 bits (109), Expect = 6e-05 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 2/127 (1%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPP--RDSGSSFRIYVGNLPWQVDDSR 414 E+A +A+E + + R + + + R P R SG +++ NL +D+ Sbjct: 96 EDASRAMESLNYAPIRDRPIRIMLS-------NRDPSTRLSGKG-NVFIKNLDASIDNKA 147 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 L E FS G ++ +V D GRS+G+GFV +E AI L+G L + + V Sbjct: 148 LYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGH 206 Query: 233 AEERPPR 213 R R Sbjct: 207 FVRRQDR 213 Score = 46.2 bits (108), Expect = 8e-05 Identities = 31/109 (28%), Positives = 56/109 (51%) Frame = -2 Query: 536 RLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYD 357 ++ V AA ++ P S +YVG+L V++S L++LF++ V + RV D Sbjct: 25 QVAAVAAAAAAAEALQTHPNSS-----LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD 79 Query: 356 RDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEERPPRR 210 T RS G+ +V A+ E+ A+ +L+ + R +R+ ++ P R Sbjct: 80 L-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTR 127
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 55.1 bits (131), Expect = 2e-07 Identities = 36/135 (26%), Positives = 62/135 (45%) Frame = -2 Query: 620 VDSGLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGN 441 +D+ P+ ++ E E D N ++K P+ A P ++V Sbjct: 60 LDTAGEPLQSMNEDE--------VDPNNESTALDKKEPQSA----PEGSENLGNDLFVSG 107 Query: 440 LPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSL 261 + ++ + L ++FS+ G V R++ + T SRGFGF++ ++ EE AI L+ Q Sbjct: 108 IASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEF 167 Query: 260 EGRALRVNVAEERPP 216 GR L V A+ P Sbjct: 168 YGRVLNVQKAKRSRP 182
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 55.1 bits (131), Expect = 2e-07 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 10/136 (7%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVE----------RPPRDSGSSFRIYVGNL 438 E+A +A E + + L V +A + R + + IYV N+ Sbjct: 252 EDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNV 311 Query: 437 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 V + L + FS+ G + +++ D + G+S+GFGFV ++ EE DA+ GQ Sbjct: 312 NVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFH 370 Query: 257 GRALRVNVAEERPPRR 210 G+ L V +A+++ R+ Sbjct: 371 GKPLYVAIAQKKEDRK 386 Score = 45.1 bits (105), Expect = 2e-04 Identities = 30/116 (25%), Positives = 56/116 (48%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 ++A A+E + +NG+++ V + V P ++V NLP V ++ L Sbjct: 76 QDANLAIEKKNNSLLNGKMIRVMWS------VRAPDARRNGVGNVFVKNLPESVTNAVLQ 129 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 240 ++F + G +V +V D G+SRG+GFV ++ AI L+ + + + V Sbjct: 130 DMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/82 (28%), Positives = 41/82 (50%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 +YVG+L V + L + F+E + R+ D +GRS +G+ S+++ + AI Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85 Query: 275 DGQSLEGRALRVNVAEERPPRR 210 + L G+ +RV + P R Sbjct: 86 NNSLLNGKMIRVMWSVRAPDAR 107 Score = 39.7 bits (91), Expect = 0.007 Identities = 31/125 (24%), Positives = 58/125 (46%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 + A A++ + V + + V K + RV+ P + ++ +Y+ NL V + L Sbjct: 163 DAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVK--PEEKYTN--LYMKNLDADVSEDLLR 218 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 228 E F+E GK+V + D + RG+ FV + E+ A ++G + L V A+ Sbjct: 219 EKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQ 277 Query: 227 ERPPR 213 ++ R Sbjct: 278 KKAER 282
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 55.1 bits (131), Expect = 2e-07 Identities = 30/97 (30%), Positives = 50/97 (51%) Frame = -2 Query: 512 APRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRG 333 AP A V+ + S R++V NL ++ +S L +FS GK+ + V +D S+G Sbjct: 278 APTAAEVDTNIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKG 337 Query: 332 FGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 F +V A + +A LDG+ +GR L + A ++ Sbjct: 338 FAYVQYADPDAAVEAYRNLDGKIFQGRLLHILPASQK 374 Score = 50.4 bits (119), Expect = 4e-06 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 7/136 (5%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRG--ARVERPPRDSGSSF-----RI 453 G + T +A+ A+ + + Y ++ L V +A+ +G A ER D+ +I Sbjct: 641 GFADFKTKAQAQAALAVMNGYTLDRHTLVV-RASHKGMDAAEERRKEDTAKKIAARRTKI 699 Query: 452 YVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALD 273 + NLP+Q + LF +G++ RV D +RGFGF S E ++A+ AL Sbjct: 700 IIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSAREAENAMDALK 758 Query: 272 GQSLEGRALRVNVAEE 225 L GR L + A E Sbjct: 759 NTHLLGRRLVLEFANE 774
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 55.1 bits (131), Expect = 2e-07 Identities = 34/84 (40%), Positives = 49/84 (58%) Frame = -2 Query: 491 ERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMA 312 E RD S ++VGNLP++VD+S L E F + G +V R+V + TG RGFG+V Sbjct: 278 ETASRDKRS---VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFE 334 Query: 311 SQEELDDAIAALDGQSLEGRALRV 240 + + + A+ L+ L GR LRV Sbjct: 335 NTDAVHLAL-KLNNSELMGRKLRV 357
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 4/92 (4%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 302 ELDDAIAA----LDGQSLEGRALRVNVAEERP 219 E+D A+ A +DG+ +E + +RP Sbjct: 66 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 97 Score = 49.3 bits (116), Expect = 9e-06 Identities = 28/109 (25%), Positives = 55/109 (50%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G +T+EE + A+ + V+GR++ +A R + P + +I+VG + Sbjct: 57 GFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKE 113 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 114 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 4/92 (4%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 302 ELDDAIAA----LDGQSLEGRALRVNVAEERP 219 E+D A+ A +DG+ +E + +RP Sbjct: 66 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 97 Score = 49.3 bits (116), Expect = 9e-06 Identities = 28/109 (25%), Positives = 55/109 (50%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G +T+EE + A+ + V+GR++ +A R + P + +I+VG + Sbjct: 57 GFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKE 113 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 114 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 54.7 bits (130), Expect = 2e-07 Identities = 33/84 (39%), Positives = 49/84 (58%) Frame = -2 Query: 491 ERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMA 312 E RD S ++VGNLP++++DS L E F + G +V R+V + TG RGFG+V Sbjct: 284 ETASRDKRS---VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFE 340 Query: 311 SQEELDDAIAALDGQSLEGRALRV 240 + + + A+ L+ L GR LRV Sbjct: 341 NTDAVHLAL-KLNNSELMGRKLRV 363
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/78 (33%), Positives = 48/78 (61%) Frame = -2 Query: 470 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 291 G ++ I++ NL + +++ L +LF G V ++V D T + +G+GFV+M + +E Sbjct: 435 GGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAM 494 Query: 290 AIAALDGQSLEGRALRVN 237 AI AL+G ++ R L+V+ Sbjct: 495 AIRALNGYTMGNRVLQVS 512
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 4/92 (4%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 302 ELDDAIAA----LDGQSLEGRALRVNVAEERP 219 E+D A+ A +DG+ +E + +RP Sbjct: 66 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 97 Score = 49.3 bits (116), Expect = 9e-06 Identities = 28/109 (25%), Positives = 55/109 (50%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G +T+EE + A+ + V+GR++ +A R + P + +I+VG + Sbjct: 57 GFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKE 113 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 114 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/79 (35%), Positives = 45/79 (56%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 R++V N+P++ D L +F + G V D ++++ S+GFGFVTM ++ + A Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAERARQE 211 Query: 278 LDGQSLEGRALRVNVAEER 222 L G +EGR + VN A R Sbjct: 212 LHGSMIEGRKIEVNCATAR 230
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/81 (34%), Positives = 47/81 (58%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 IY+GNL ++ + ++ +FSE+G VD + D +TG S+GF ++ Q A+ L Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 275 DGQSLEGRALRVNVAEERPPR 213 +G + GRAL+++ RP R Sbjct: 93 NGFKIGGRALKIDHTFYRPKR 113
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 4/92 (4%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 302 ELDDAIAA----LDGQSLEGRALRVNVAEERP 219 E+D A+ A +DG+ +E + +RP Sbjct: 66 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 97 Score = 49.3 bits (116), Expect = 9e-06 Identities = 28/109 (25%), Positives = 55/109 (50%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G +T+EE + A+ + V+GR++ +A R + P + +I+VG + Sbjct: 57 GFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKE 113 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 114 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/78 (33%), Positives = 48/78 (61%) Frame = -2 Query: 470 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 291 G ++ I++ NL + +++ L +LF G V ++V D T + +G+GFV+M + +E Sbjct: 399 GGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAM 458 Query: 290 AIAALDGQSLEGRALRVN 237 AI AL+G ++ R L+V+ Sbjct: 459 AIRALNGYTMGNRVLQVS 476
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 54.3 bits (129), Expect = 3e-07 Identities = 35/125 (28%), Positives = 62/125 (49%) Frame = -2 Query: 605 SPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQV 426 S S I+EA+K+ + ++GR++ +A PR + P + +++VG L Sbjct: 80 SHSSMIDEAQKS----RPHKIDGRVVEPKRAVPR--QDIDSPNAGATVKKLFVGALKDDH 133 Query: 425 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 246 D+ + + F G +VD +V D++TG+ RGF FV + +D + Q L G+ + Sbjct: 134 DEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQ-LNGKMV 192 Query: 245 RVNVA 231 V A Sbjct: 193 DVKKA 197 Score = 47.8 bits (112), Expect = 3e-05 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++G L ++ D L F + G +VD V+ D T RSRGFGF+T + +D+A + Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91 Query: 278 ----LDGQSLE 258 +DG+ +E Sbjct: 92 RPHKIDGRVVE 102
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 53.9 bits (128), Expect = 4e-07 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 40/164 (24%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFR---------------- 456 E +KA+E ++YD++GR L + K P G R + +G+SF+ Sbjct: 143 EFVKKALETMNKYDLSGRPLNI-KEDPDGENARRALQRTGTSFQGSHASDVGSGLVNLPP 201 Query: 455 ------------------------IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDT 348 I+V NL ++V +L E+FS G V A + D+D Sbjct: 202 SILNNPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD- 260 Query: 347 GRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEERPP 216 G+SRG G VT E AI+ +GQ L R + V + ++ P Sbjct: 261 GKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSVP 304 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +I+V NLP+ + +L E FS+ G V+ A + + G+S+G G V S E + A Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFESAESAEKACRI 572 Query: 278 LDGQSLEGRALRVNV 234 ++G + GR + V + Sbjct: 573 MNGIKISGREIDVRL 587 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEH-GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 R+++ N+P+ + + +L E G+V + D + G+SRG G V +E + A+ Sbjct: 92 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALE 150 Query: 281 ALDGQSLEGRALRV 240 ++ L GR L + Sbjct: 151 TMNKYDLSGRPLNI 164
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 53.9 bits (128), Expect = 4e-07 Identities = 28/110 (25%), Positives = 61/110 (55%) Frame = -2 Query: 551 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 372 + ++GR + PR +++P + G +++++G LP V ++ L F+ +GKV + Sbjct: 70 HTLDGRTIDPKPCNPR--TLQKPKK--GGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEV 125 Query: 371 RVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 ++YD++ +SRGFGF++ + ++ + +L G+ + + AE R Sbjct: 126 VIMYDQEKKKSRGFGFLSFEEESSVEH-VTNERYINLNGKQVEIKKAEPR 174 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 282 +++VG L W+ L F G ++D V+ + ++GRSRGFGFVT A ++ + Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 281 ---ALDGQSLE 258 LDG++++ Sbjct: 68 GPHTLDGRTID 78
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 53.5 bits (127), Expect = 5e-07 Identities = 36/127 (28%), Positives = 61/127 (48%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G S +EEA+ A+ + V+G + + +A R P +++VG L Sbjct: 51 GFVTYSNVEEADAAMAA-SPHAVDGNTVELKRAVSREDSAR--PGAHAKVKKLFVGGLKG 107 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 V + L+E FS+ G V A ++ D+ +G+ RGFGFV + + D A A + ++G Sbjct: 108 DVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA-AVVKFHPIQGH 166 Query: 251 ALRVNVA 231 + V A Sbjct: 167 RVEVKKA 173 Score = 47.0 bits (110), Expect = 5e-05 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 282 ++++G L Q +S L F G + D VV + T RSR FGFVT ++ EE D A+A Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 281 ---ALDGQSLE 258 A+DG ++E Sbjct: 68 SPHAVDGNTVE 78
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 53.5 bits (127), Expect = 5e-07 Identities = 31/102 (30%), Positives = 51/102 (50%) Frame = -2 Query: 527 TVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDT 348 T+ + V + D ++V ++P V D +L + FS + A VV D + Sbjct: 4 TIENVEVPSSNVSKQNDDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK 63 Query: 347 GRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 RSRGFGFV+ A +++ +A+A G LRV++A+ R Sbjct: 64 -RSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRR 104 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Frame = -2 Query: 458 RIYVGNLPWQVDDS-RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 ++ + N+PW D +L ++F +G VV+A + RD G+ GF FVTM A+ Sbjct: 148 KLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRD-GKLCGFAFVTMKKISNCRIALE 206 Query: 281 ALDGQSLEGRALRVNVAEER 222 ++GR + V+ A ++ Sbjct: 207 NTKDLKIDGRKVAVDFAVQK 226
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 53.5 bits (127), Expect = 5e-07 Identities = 31/85 (36%), Positives = 47/85 (55%) Frame = -2 Query: 473 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 294 SGS ++V L + L LFS++GKVV A+VV + + +R +GFVTM++ +E Sbjct: 403 SGSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEAT 462 Query: 293 DAIAALDGQSLEGRALRVNVAEERP 219 I+ L L GR + V A+ P Sbjct: 463 KCISHLHRTELHGRMISVEKAKNEP 487 Score = 33.5 bits (75), Expect = 0.52 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKA 513 G MST +EA K + HR +++GR+++V KA Sbjct: 451 GFVTMSTSDEATKCISHLHRTELHGRMISVEKA 483
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 53.5 bits (127), Expect = 5e-07 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P++ ++++G L ++ D L E F + G + D V+ D T RSRGFGFVT + E Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 302 ELDDAIAA----LDGQSLE 258 E+D A+ A +DG+ +E Sbjct: 88 EVDAAMCARPHKVDGRVVE 106 Score = 49.3 bits (116), Expect = 9e-06 Identities = 30/109 (27%), Positives = 55/109 (50%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G S +EE + A+ + V+GR++ +A R V+ P + +I+VG + Sbjct: 79 GFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKE 135 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L + F ++GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 136 DTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 53.5 bits (127), Expect = 5e-07 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 2/126 (1%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRD--SGSSFRIYVGNLPWQVDD 420 T E+A++A+ + ++ GR + + ++P + R + S ++V L + Sbjct: 507 TAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTE 566 Query: 419 SRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 240 L E F + AR+V DRDTG S+GFGFV +S E+ A A++ ++G + + Sbjct: 567 ETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTL 623 Query: 239 NVAEER 222 + A+ + Sbjct: 624 DFAKPK 629 Score = 50.1 bits (118), Expect = 5e-06 Identities = 31/118 (26%), Positives = 57/118 (48%) Frame = -2 Query: 593 TIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSR 414 T EAEKA+E +V+GR + ++ + + + S + V NL + + Sbjct: 417 TEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEET 476 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 240 L ELF K + + + GR +G+ FV + E+ +A+ + + +EGRA+R+ Sbjct: 477 LQELF----KKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRL 530 Score = 40.0 bits (92), Expect = 0.006 Identities = 27/123 (21%), Positives = 67/123 (54%), Gaps = 1/123 (0%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVE-RPPRDSGSSFRIYVGNLPWQVDDSRL 411 E+ +KA+++ + + G + + KA + + E + RD+ + ++V NLP++V + + Sbjct: 332 EDMDKALQLNGK-KLMGLEIKLEKAKSKESLKENKKERDART---LFVKNLPYRVTEDEM 387 Query: 410 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 +F ++ R+V +++ G S+G ++ ++ E + A+ G ++GRA+ ++ Sbjct: 388 KNVFEN---ALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYT 443 Query: 230 EER 222 E+ Sbjct: 444 GEK 446
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 53.5 bits (127), Expect = 5e-07 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P++ ++++G L ++ D L E F + G + D V+ D T RSRGFGFVT + E Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 302 ELDDAIAA----LDGQSLE 258 E+D A+ A +DG+ +E Sbjct: 88 EVDAAMCARPHKVDGRVVE 106 Score = 49.3 bits (116), Expect = 9e-06 Identities = 30/109 (27%), Positives = 55/109 (50%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G S +EE + A+ + V+GR++ +A R V+ P + +I+VG + Sbjct: 79 GFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKE 135 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L + F ++GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 136 DTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 53.5 bits (127), Expect = 5e-07 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P++ ++++G L ++ D L E F + G + D V+ D T RSRGFGFVT + E Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 302 ELDDAIAA----LDGQSLE 258 E+D A+ A +DG+ +E Sbjct: 88 EVDAAMCARPHKVDGRVVE 106 Score = 49.3 bits (116), Expect = 9e-06 Identities = 30/109 (27%), Positives = 55/109 (50%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G S +EE + A+ + V+GR++ +A R V+ P + +I+VG + Sbjct: 79 GFVTYSCVEEVDAAM-CARPHKVDGRVVEPKRAVSREDSVK--PGAHLTVKKIFVGGIKE 135 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L + F ++GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 136 DTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 53.1 bits (126), Expect = 6e-07 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 4/92 (4%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P++ ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 302 ELDDAIAA----LDGQSLEGRALRVNVAEERP 219 ++D A+ A +DG+ +E + +RP Sbjct: 66 KVDAAMNARPHKVDGRVVEPKRAVSREDSQRP 97 Score = 47.0 bits (110), Expect = 5e-05 Identities = 27/109 (24%), Positives = 54/109 (49%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G +T+E+ + A+ + V+GR++ +A R + P + +I+VG + Sbjct: 57 GFVTYATVEKVDAAMNA-RPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKE 113 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L + F ++GK+ ++ DR +G+ RGF FVT +D + Sbjct: 114 DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 162
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 53.1 bits (126), Expect = 6e-07 Identities = 30/84 (35%), Positives = 50/84 (59%) Frame = -2 Query: 491 ERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMA 312 E RD S ++VGNLP++V++S + + F + G ++ R+V D+ TG +GFG+V Sbjct: 280 ETSSRDKRS---VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFE 336 Query: 311 SQEELDDAIAALDGQSLEGRALRV 240 + + + A+ L+ L GR LRV Sbjct: 337 NTDSVHLAL-KLNNSELMGRKLRV 359
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 53.1 bits (126), Expect = 6e-07 Identities = 27/83 (32%), Positives = 43/83 (51%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 R+++ N+ + + +LFS +G++ + V D TG S+GF +V A EE A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 278 LDGQSLEGRALRVNVAEERPPRR 210 LD Q +GR L + A+E R Sbjct: 386 LDKQIFQGRLLHILAADEMKDHR 408 Score = 45.1 bits (105), Expect = 2e-04 Identities = 34/129 (26%), Positives = 57/129 (44%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G T E+A + ++G + + K + R + + +I V NLP+ Sbjct: 689 GFVEFRTKEQATAVISAMDGTVIDGHKIQL-KLSHRQGNAGSQEKKKAKNGKIIVKNLPF 747 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 + + ELF+ G++ RV D +RGF FV +E ++A+ L G L GR Sbjct: 748 EATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFVLPKEAENAMDQLQGVHLLGR 806 Query: 251 ALRVNVAEE 225 L + AE+ Sbjct: 807 RLVMQPAEQ 815 Score = 38.1 bits (87), Expect = 0.021 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 5/88 (5%) Frame = -2 Query: 470 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQ 306 G + I++ NL ++ +L + F V A+V D + S GFGFV ++ Sbjct: 637 GPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTK 696 Query: 305 EELDDAIAALDGQSLEGRALRVNVAEER 222 E+ I+A+DG ++G +++ ++ + Sbjct: 697 EQATAVISAMDGTVIDGHKIQLKLSHRQ 724 Score = 33.1 bits (74), Expect = 0.68 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 11/88 (12%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEH-----------GKVVDARVVYDRDTGRSRGFGFVTMA 312 R+ V LP + + L + F++ G + D R++ +R+ G+SR F F+ Sbjct: 3 RVIVKGLPIYLTEPELQKHFNKRLITTHATSNVDGLITDLRILKNRE-GKSRRFAFIGYK 61 Query: 311 SQEELDDAIAALDGQSLEGRALRVNVAE 228 ++++ DA+ DG + + V++A+ Sbjct: 62 NEQDALDAVNYFDGSFIYTSKIEVDMAK 89
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 53.1 bits (126), Expect = 6e-07 Identities = 23/78 (29%), Positives = 49/78 (62%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++G L + ++ L +F +HG + + ++ DR T +SRGF F+T + + +A Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 278 LDGQSLEGRALRVNVAEE 225 ++G+SL G+A++V A++ Sbjct: 68 MNGKSLHGKAIKVEQAKK 85
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 53.1 bits (126), Expect = 6e-07 Identities = 28/77 (36%), Positives = 48/77 (62%) Frame = -2 Query: 461 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 FR++VGNL V+D L + FSE+ +V +VV DR+ G++RGFGFV+ ++ A Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWR 88 Query: 281 ALDGQSLEGRALRVNVA 231 +G+ + R ++++ A Sbjct: 89 EKNGKYIGSRPVKLSRA 105
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 53.1 bits (126), Expect = 6e-07 Identities = 33/128 (25%), Positives = 62/128 (48%) Frame = -2 Query: 596 STIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 S +EA KA+E ++ GR + V+ + G S + V NL + + Sbjct: 369 SNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATED 428 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 L E+F K R+ ++ GR++GF F+ +S E+ DA+ + + +EGR++R+ Sbjct: 429 SLREVFE---KATSIRI--PQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLE 483 Query: 236 VAEERPPR 213 ++ P+ Sbjct: 484 FSQGGGPQ 491 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/125 (27%), Positives = 64/125 (51%) Frame = -2 Query: 596 STIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 S+ E+A+ A++ + ++ GR + + + G + S S ++V L + Sbjct: 458 SSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQ-GGGRGGSAQSKTLFVRGLSEDTTEE 516 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 L E F V+AR+V DRDTG S+GFGFV ++ E+ A A++ ++G + ++ Sbjct: 517 TLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLD 573 Query: 236 VAEER 222 A+ + Sbjct: 574 FAKPK 578 Score = 32.0 bits (71), Expect = 1.5 Identities = 24/96 (25%), Positives = 44/96 (45%) Frame = -2 Query: 518 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 339 K P + + G S I++GNL + L + E + + D G S Sbjct: 215 KTIPEAKKTKTDTASEGLS--IFIGNLNSTKEFDELKDALREFFSKKNL-TIQDIRIGNS 271 Query: 338 RGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 + FG+V +S+EE++ A+ L G+ + G +++ A Sbjct: 272 KKFGYVDFSSEEEVEKAL-KLTGKKILGTEVKIEKA 306
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 52.8 bits (125), Expect = 8e-07 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Frame = -2 Query: 479 RDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 R S SS R ++V L + L LFS+HGKV+ A+VV + + +R +GFVTM++ + Sbjct: 444 RASCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSD 503 Query: 302 ELDDAIAALDGQSLEGRALRVNVAEERPPRR 210 E I+ L L GR + V A+ P + Sbjct: 504 EATKCISHLHRTELHGRMISVEKAKNEPSEK 534 Score = 33.5 bits (75), Expect = 0.52 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKA 513 G MST +EA K + HR +++GR+++V KA Sbjct: 495 GFVTMSTSDEATKCISHLHRTELHGRMISVEKA 527
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 52.8 bits (125), Expect = 8e-07 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 4/92 (4%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P + ++++G L ++ D L E F + G + D V+ D ++ RSRGFGFVT S + Sbjct: 7 PNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTD 66 Query: 302 ELDDAIAA----LDGQSLEGRALRVNVAEERP 219 E+D A+ A +DG+ +E + RP Sbjct: 67 EVDAAMTARPHKVDGRVVEPKRAVSREDSSRP 98 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/89 (26%), Positives = 45/89 (50%) Frame = -2 Query: 551 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 372 + V+GR++ +A R P + +I+VG + ++ L E F ++GK+ Sbjct: 77 HKVDGRVVEPKRAVSR--EDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVI 134 Query: 371 RVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ DR +G+ RGF FVT + +D + Sbjct: 135 EIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 52.8 bits (125), Expect = 8e-07 Identities = 31/81 (38%), Positives = 46/81 (56%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 ++V NL ++V +L E+FS G VV A ++ D+D G+SRG G VT E AI+ Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGIVTFEQSIEAVQAISMF 262 Query: 275 DGQSLEGRALRVNVAEERPPR 213 +GQ L R + V + E P+ Sbjct: 263 NGQLLFDRPMHVKMDERALPK 283 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +I+V NLP+ L + F+E G V+ A + + G+S+G G V S E + A Sbjct: 652 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 709 Query: 278 LDGQSLEGRALRVNV 234 ++G L GR + V + Sbjct: 710 MNGMKLSGREIDVRI 724
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 52.8 bits (125), Expect = 8e-07 Identities = 24/66 (36%), Positives = 41/66 (62%) Frame = -2 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G L+GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 233 AEERPP 216 + + P Sbjct: 194 SITKRP 199
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 52.8 bits (125), Expect = 8e-07 Identities = 24/66 (36%), Positives = 41/66 (62%) Frame = -2 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G L+GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 233 AEERPP 216 + + P Sbjct: 194 SITKRP 199
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 52.8 bits (125), Expect = 8e-07 Identities = 24/66 (36%), Positives = 41/66 (62%) Frame = -2 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G L+GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 233 AEERPP 216 + + P Sbjct: 194 SITKRP 199
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 52.8 bits (125), Expect = 8e-07 Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 2/132 (1%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTV--NKAAPRGARVERPPRDSGSSFRIYVGNL 438 G M + EA++A++ H Y +NG + V +K P+ +S +++VGN+ Sbjct: 38 GFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSKGKPK------------TSTKLHVGNI 85 Query: 437 PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 + L F E+G VV+ +V D + FV M E+ +AI+ LD + + Sbjct: 86 SSSCTNQELRAKFEEYGPVVECDIVKD--------YAFVHMERVEDAMEAISGLDNTAFQ 137 Query: 257 GRALRVNVAEER 222 G+ + V ++ R Sbjct: 138 GKLMSVKLSTSR 149 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/80 (33%), Positives = 43/80 (53%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +I+VGNL + LFS++GK+ + +V + FGFV M S+ E D+AI Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQN 54 Query: 278 LDGQSLEGRALRVNVAEERP 219 L L G A+ V +++ +P Sbjct: 55 LHHYMLNGMAMNVEMSKGKP 74
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 52.8 bits (125), Expect = 8e-07 Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 40/164 (24%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF----------------- 459 E +KA+E ++YD++GR L + K P G R + +G SF Sbjct: 152 EFVKKALETMNKYDLSGRPLNI-KEDPDGENARRALQRTGGSFPGGHVPDMGSGLMNLPP 210 Query: 458 -----------------------RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDT 348 I+V NL ++V +L E+FS G V A + D+D Sbjct: 211 SILNNPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD- 269 Query: 347 GRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEERPP 216 G+SRG G VT E AI+ +GQ L R + V + ++ P Sbjct: 270 GKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSVP 313 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +I+V NLP+ + +L E FS+ G V+ A + + G+S+G G V S E + A Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFDSPESAEKACRI 581 Query: 278 LDGQSLEGRALRVNV 234 ++G + GR + V + Sbjct: 582 MNGIKISGREIDVRL 596 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEH-GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 R+++ N+P+ + + +L E G+V + D + G+SRG G V +E + A+ Sbjct: 101 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALE 159 Query: 281 ALDGQSLEGRALRV 240 ++ L GR L + Sbjct: 160 TMNKYDLSGRPLNI 173
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 52.4 bits (124), Expect = 1e-06 Identities = 26/76 (34%), Positives = 41/76 (53%) Frame = -2 Query: 521 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 342 + ++PR + R+ +++++G L W L + FS+ G+VVD + D TGR Sbjct: 80 SNSSPRHSEAATAQREE---WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136 Query: 341 SRGFGFVTMASQEELD 294 SRGFGFV E +D Sbjct: 137 SRGFGFVLFKESESVD 152 Score = 36.6 bits (83), Expect = 0.062 Identities = 22/95 (23%), Positives = 45/95 (47%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 E +K ++ + +NG+++ +A + + + P + +I+VG L + ++ Sbjct: 149 ESVDKVMDQ-KEHKLNGKVIDPKRA--KAMKTKEPVK------KIFVGGLSPDTPEEKIR 199 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 E F G+V + D T + RGF F+T +E Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 52.4 bits (124), Expect = 1e-06 Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 16/136 (11%) Frame = -2 Query: 599 MSTIEEAEKAVEMFHRYDVNGRLLTV--NKAAP--RGARVERPP------------RDSG 468 +S+ EE +KA++ Y + GR + V K AP RG P D Sbjct: 339 LSSEEEVKKALKCNRDY-MGGRYIEVFREKQAPTARGPPKSTTPWQGRTLGENEEEEDLA 397 Query: 467 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 288 S R++V NL + + L +LFS +G + + D T + +GF FVT E A Sbjct: 398 DSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 457 Query: 287 IAALDGQSLEGRALRV 240 A +DGQ +GR L V Sbjct: 458 YAEVDGQVFQGRMLHV 473 Score = 50.4 bits (119), Expect = 4e-06 Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 8/128 (6%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVN------KAAPRGARVERPPRDSGSSFRIYVGNLPWQV 426 E+A+KA++ + V+G L V K A R ++ P+ +S +I V N+P+Q Sbjct: 777 EQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTS-KILVRNIPFQA 835 Query: 425 DDSRLVELFSEHGKVVDARVVYD-RDTGRSRGFGFVTMASQEELDDAIAAL-DGQSLEGR 252 + + ELFS G++ R+ TG RGFGFV ++++ A AL L GR Sbjct: 836 NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 895 Query: 251 ALRVNVAE 228 L + A+ Sbjct: 896 RLVLEWAD 903 Score = 38.5 bits (88), Expect = 0.016 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 R+ V NLP + + R +LF+ G + D + + +D G+ R FGF+ S+EE A+ Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAAL 59
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 52.4 bits (124), Expect = 1e-06 Identities = 28/79 (35%), Positives = 46/79 (58%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++G L ++ + L + + GK+ D V+ D + RSRGFGFVT +S E+D A+AA Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 278 LDGQSLEGRALRVNVAEER 222 S++GR + A R Sbjct: 70 RP-HSIDGRVVEPKRAVAR 87 Score = 49.7 bits (117), Expect = 7e-06 Identities = 27/109 (24%), Positives = 54/109 (49%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G S++ E + A+ + ++GR++ +A R P + +++VG + Sbjct: 53 GFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR--EESGKPGAHVTVKKLFVGGIKE 109 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L + F E+GK+ ++ DR +G+ RGFGFVT + +D + Sbjct: 110 DTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/130 (27%), Positives = 64/130 (49%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G M T ++ A++ + Y +N + V A R A + + +I+VGNL Sbjct: 43 GFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAAKSRRA-------PNTPTTKIFVGNLTD 95 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 + + ELF ++G VV+ +V R +GFV + ++ DAI L+G+ ++G+ Sbjct: 96 KTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKELNGRVVDGQ 147 Query: 251 ALRVNVAEER 222 L+V V+ R Sbjct: 148 PLKVQVSTSR 157 Score = 47.4 bits (111), Expect = 3e-05 Identities = 26/81 (32%), Positives = 47/81 (58%) Frame = -2 Query: 464 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 +F++++GNL + + L LF ++G VV+ VV + +GFV M ++++ DAI Sbjct: 6 TFKLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAI 57 Query: 284 AALDGQSLEGRALRVNVAEER 222 L+G +L A++V A+ R Sbjct: 58 QNLNGYTLNEFAIKVEAAKSR 78
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 52.0 bits (123), Expect = 1e-06 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 5/92 (5%) Frame = -2 Query: 518 KAAPRGA-RVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 342 + APR + D+G +++VG L W L + F++ G+VVD + D +TGR Sbjct: 51 RTAPRDQINASKNEEDAG---KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGR 107 Query: 341 SRGFGFVTM---ASQEE-LDDAIAALDGQSLE 258 SRGFGF+ AS E+ LD LDG+ ++ Sbjct: 108 SRGFGFILFKDAASVEKVLDQKEHRLDGRVID 139 Score = 31.6 bits (70), Expect = 2.0 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = -2 Query: 458 RIYVGNL-PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 +I+VG L P + ++ E F E G++ + D + RGF F+T +E + + Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212 Query: 281 ALDGQSLEGRALRVNVAEER 222 ++ G + VA+ + Sbjct: 213 K-KFHTVSGSKCEIKVAQPK 231
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/81 (38%), Positives = 46/81 (56%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 ++V NL ++V +L E+FS G VV A ++ D+D G+SRG G VT E AI+ Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMF 263 Query: 275 DGQSLEGRALRVNVAEERPPR 213 +GQ L R + V + E P+ Sbjct: 264 NGQLLFDRPMHVKMDERALPK 284 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +I+V NLP+ L + F+E G V+ A + + G+S+G G V S E + A Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 710 Query: 278 LDGQSLEGRALRVNV 234 ++G L GR + V + Sbjct: 711 MNGMKLSGREIDVRI 725
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/76 (34%), Positives = 40/76 (52%) Frame = -2 Query: 521 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 342 + ++PR R+ +++++G L W L + FS+ G+VVD + D TGR Sbjct: 80 SNSSPRHTEAAAAQREE---WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136 Query: 341 SRGFGFVTMASQEELD 294 SRGFGFV E +D Sbjct: 137 SRGFGFVLFKESESVD 152 Score = 36.6 bits (83), Expect = 0.062 Identities = 22/95 (23%), Positives = 45/95 (47%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 E +K ++ + +NG+++ +A + + + P + +I+VG L + ++ Sbjct: 149 ESVDKVMDQ-KEHKLNGKVIDPKRA--KAMKTKEPVK------KIFVGGLSPDTPEEKIR 199 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 E F G+V + D T + RGF F+T +E Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 52.0 bits (123), Expect = 1e-06 Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 12/141 (8%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGS-------SFRI 453 G T E A KA++ ++++G+ L V K A RGA +R + G S ++ Sbjct: 584 GFVGFKTKEAATKALKALEGFEIDGKSLEV-KFAQRGAEDDRETKKGGDAEGGKTKSTKV 642 Query: 452 YVGNLPWQVDDSRLVELFSEHGKVVDARV---VYDRDTG--RSRGFGFVTMASQEELDDA 288 V NLP++ + ELFS +G++ R+ TG +RGF F+ + E A Sbjct: 643 LVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTEAARA 702 Query: 287 IAALDGQSLEGRALRVNVAEE 225 + AL L GR L + A E Sbjct: 703 MEALKHTHLLGRHLVLQWANE 723 Score = 38.5 bits (88), Expect = 0.016 Identities = 23/83 (27%), Positives = 38/83 (45%) Frame = -2 Query: 467 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 288 S+ R++V NL + L FS +G++ + + + TG G F+ + E+ A Sbjct: 219 STSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAA 278 Query: 287 IAALDGQSLEGRALRVNVAEERP 219 ALD +GR L V +P Sbjct: 279 YKALDKTIFQGRLLHVLPGRAKP 301 Score = 32.3 bits (72), Expect = 1.2 Identities = 14/38 (36%), Positives = 24/38 (63%) Frame = -2 Query: 341 SRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 228 S G+GFV ++E A+ AL+G ++G++L V A+ Sbjct: 580 SMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQ 617
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.0 bits (123), Expect = 1e-06 Identities = 28/76 (36%), Positives = 41/76 (53%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 +YVG L +VDD L F G + D ++ D +T + RGF FV E+ AI + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 275 DGQSLEGRALRVNVAE 228 + L GR +RVN+A+ Sbjct: 68 NESELFGRTIRVNLAK 83
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.0 bits (123), Expect = 1e-06 Identities = 28/76 (36%), Positives = 41/76 (53%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 +YVG L +VDD L F G + D ++ D +T + RGF FV E+ AI + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 275 DGQSLEGRALRVNVAE 228 + L GR +RVN+A+ Sbjct: 68 NESELFGRTIRVNLAK 83
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 51.6 bits (122), Expect = 2e-06 Identities = 30/108 (27%), Positives = 63/108 (58%), Gaps = 1/108 (0%) Frame = -2 Query: 551 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVD 375 + V+GR++ +A PR + RP ++G++ + ++VG + +++++ L + F ++G VV Sbjct: 80 HKVDGRVVEPKRAVPR-TEIGRP--EAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVS 136 Query: 374 ARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 A +V D++T + RGF FV + +D + + Q + G+ + V A Sbjct: 137 AAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQ-IRGKHIDVKKA 183 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++G L ++ D L + F + G++VD V+ D T RSRGFGF+T + +DDA A Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77 Query: 278 ----LDGQSLE 258 +DG+ +E Sbjct: 78 RPHKVDGRVVE 88
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 51.6 bits (122), Expect = 2e-06 Identities = 25/59 (42%), Positives = 37/59 (62%) Frame = -2 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 L E+FS +G + VVYD+ TGRSRGF FV ++ +A+ +G L+GR +RV+ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 51.6 bits (122), Expect = 2e-06 Identities = 25/59 (42%), Positives = 37/59 (62%) Frame = -2 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 L E+FS +G + VVYD+ TGRSRGF FV ++ +A+ +G L+GR +RV+ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = -2 Query: 464 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 S R++V NLP+ +S L +FS+ GK+ + V +D + S+GF +V + A Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359 Query: 284 AALDGQSLEGRALRV 240 LDG+ +GR + + Sbjct: 360 KELDGKHFQGRLMHI 374 Score = 45.8 bits (107), Expect = 1e-04 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 6/135 (4%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTV---NKA---APRGARVERPPRDSGSSFRIY 450 G T +A+ A+ Y ++ L V NKA A R + + + +I Sbjct: 646 GFVDFRTKAQAQAALAAMDGYKLDQHELVVRASNKAMDAAEERRREDTAKKIAARRTKII 705 Query: 449 VGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 270 + NLP+Q + LF +G++ RV D +RGFGF S E ++A+ AL Sbjct: 706 IKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSAREAENAMDALKN 764 Query: 269 QSLEGRALRVNVAEE 225 L GR L + A E Sbjct: 765 THLLGRRLVLEFANE 779 Score = 40.0 bits (92), Expect = 0.006 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 5/82 (6%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQEELDD 291 ++V NL + + R E+F V AR+ D R S GFGFV ++ + Sbjct: 599 LFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQA 658 Query: 290 AIAALDGQSLEGRALRVNVAEE 225 A+AA+DG L+ L V + + Sbjct: 659 ALAAMDGYKLDQHELVVRASNK 680
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 51.6 bits (122), Expect = 2e-06 Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 17/136 (12%) Frame = -2 Query: 596 STIEEAEKAVEMFHRYDVNGRLLTV--------NKAAPRGARVERPPR---------DSG 468 S EE ++A++ Y + GR + V K AP+ R D Sbjct: 341 SNEEEVKQALKCNREY-MGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLA 399 Query: 467 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 288 S R++V NLP+ + L +LFS++G + + D T + +GF F+T E A Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459 Query: 287 IAALDGQSLEGRALRV 240 + +DGQ +GR L V Sbjct: 460 YSEVDGQVFQGRMLHV 475 Score = 50.1 bits (118), Expect = 5e-06 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 8/128 (6%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVN------KAAPRGARVERPPRDSGSSFRIYVGNLPWQV 426 E+A+KA++ + V+G L V K A AR ++ PR +S +I V N+P+Q Sbjct: 785 EQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTS-KILVRNIPFQA 843 Query: 425 DDSRLVELFSEHGKVVDARVVYD-RDTGRSRGFGFVTMASQEELDDAIAAL-DGQSLEGR 252 + ELFS G++ R+ TG RGFGFV ++++ A AL L GR Sbjct: 844 HSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGR 903 Query: 251 ALRVNVAE 228 L + A+ Sbjct: 904 RLVLEWAD 911 Score = 38.1 bits (87), Expect = 0.021 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 288 R+ V NLP + + R +LF+ G + D + + +D G+ R FGF+ S+EE A Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKA 58
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 51.6 bits (122), Expect = 2e-06 Identities = 21/71 (29%), Positives = 43/71 (60%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 +Y+G++P+ + ++++L S G V++ ++++D TGRS+G+ F+ E A+ L Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 275 DGQSLEGRALR 243 +G L R L+ Sbjct: 80 NGYQLGSRFLK 90
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 51.2 bits (121), Expect = 2e-06 Identities = 26/76 (34%), Positives = 39/76 (51%) Frame = -2 Query: 521 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 342 + ++PR R+ +++++G L W L + FS+ G VVD + D TGR Sbjct: 78 SNSSPRHTEAATAQREE---WKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGR 134 Query: 341 SRGFGFVTMASQEELD 294 SRGFGFV E +D Sbjct: 135 SRGFGFVLFKESESVD 150 Score = 36.6 bits (83), Expect = 0.062 Identities = 22/95 (23%), Positives = 45/95 (47%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 E +K ++ + +NG+++ +A + + + P + +I+VG L + ++ Sbjct: 147 ESVDKVMDQ-KEHKLNGKVIDPKRA--KAMKTKEPVK------KIFVGGLSPDTPEEKIR 197 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 E F G+V + D T + RGF F+T +E Sbjct: 198 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 232
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 51.2 bits (121), Expect = 2e-06 Identities = 27/109 (24%), Positives = 54/109 (49%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G S + E + A+ + ++GR++ +A R + P + +++VG + Sbjct: 53 GFVTFSCMNEVDAAMSA-RPHTIDGRVVEPKRAVAREESAK--PGAHVTVKKLFVGGIKE 109 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L E F E+GK+ ++ D+ +G+ RGFGFVT + +D + Sbjct: 110 DTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++G L ++ + L + + G++ D V+ D + RSRGFGFVT + E+D A++A Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 278 ----LDGQSLE 258 +DG+ +E Sbjct: 70 RPHTIDGRVVE 80
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 51.2 bits (121), Expect = 2e-06 Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 7/132 (5%) Frame = -2 Query: 596 STIEEAEKAVEMFHRYDVNGRLLT--VNKAAPRGAR----VERPPRDSGSSFRIYVGNLP 435 S+ AE+A+ ++ + G T +N A G + V R P F I+VG+L Sbjct: 136 SSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPE-----FSIFVGDLL 190 Query: 434 WQVDDSRLVELF-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 +DS L F S + A+++ D TG SR +GFV +S++E A+ + G + Sbjct: 191 PTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQ 250 Query: 257 GRALRVNVAEER 222 GR LR++VA + Sbjct: 251 GRPLRISVASPK 262
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFV----TMASQEELDD 291 +++VG L W L + F++ G+VVD + D +TGRSRGFGF+ + + ++ LD Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135 Query: 290 AIAALDGQSLE 258 LDG+ ++ Sbjct: 136 KEHRLDGRVID 146 Score = 31.6 bits (70), Expect = 2.0 Identities = 16/79 (20%), Positives = 37/79 (46%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +I+VG L + + ++ E F + G++ + D + RGF F+T ++ + + Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219 Query: 278 LDGQSLEGRALRVNVAEER 222 ++ G + VA+ + Sbjct: 220 -KFHTVSGSKCEIKVAQPK 237
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Frame = -2 Query: 551 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVD 375 + ++GR + +A PR ++ P ++G++ + ++VG L D+ L E F + G++V Sbjct: 87 HKIDGRTVEPKRAVPR-QEIDSP--NAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVS 143 Query: 374 ARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 +V D+DTG+ RGF F+ + +D I Sbjct: 144 VNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++G L ++ D L F + G +VD V+ D T RSRGFGF+T + +D+A A Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84 Query: 278 ----LDGQSLE 258 +DG+++E Sbjct: 85 RPHKIDGRTVE 95
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 50.8 bits (120), Expect = 3e-06 Identities = 29/81 (35%), Positives = 43/81 (53%) Frame = -2 Query: 473 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 294 S SS +YVGNLP + + + +LFS++G VV + + R G+ FV + + Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAE 59 Query: 293 DAIAALDGQSLEGRALRVNVA 231 DAI DG +G LRV +A Sbjct: 60 DAIHGRDGYDFDGHRLRVELA 80
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 50.8 bits (120), Expect = 3e-06 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Frame = -2 Query: 614 SGLS--PMSTIEEAEKAVEMFHRYDV-------NGRLLTVNKAAPRGARVERPPRDSGSS 462 SGLS ST+E +A +Y N LLT G++ E P G++ Sbjct: 346 SGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGP---EGAN 402 Query: 461 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 IY +LP + D L+++F G VV A+V D+ T S+ FGFV+ + AI Sbjct: 403 LFIY--HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 460 Query: 281 ALDGQSLEGRALRVNVAEER 222 +++G + + L+V + + Sbjct: 461 SMNGFQIGMKRLKVQLKRSK 480 Score = 34.7 bits (78), Expect = 0.23 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = -2 Query: 494 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTG--RSRGFGFV 321 ++ P + + +++VG +P + L ELF ++G V + ++ DR +S+G FV Sbjct: 5 LDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFV 64 Query: 320 TMASQEELDDAIAAL 276 T +++ +A AL Sbjct: 65 TFYTRKAALEAQNAL 79 Score = 34.3 bits (77), Expect = 0.31 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++G + + ++ + +FS G++ + R++ D G SRG FVT ++ AI A Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRTMAQTAIKA 167 Query: 278 L-DGQSLEG 255 + Q++EG Sbjct: 168 MHQAQTMEG 176
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 50.8 bits (120), Expect = 3e-06 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Frame = -2 Query: 614 SGLS--PMSTIEEAEKAVEMFHRYDV-------NGRLLTVNKAAPRGARVERPPRDSGSS 462 SGLS ST+E +A +Y N LLT G++ E P G++ Sbjct: 346 SGLSNGTGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGP---EGAN 402 Query: 461 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 IY +LP + D L+++F G VV A+V D+ T S+ FGFV+ + AI Sbjct: 403 LFIY--HLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 460 Query: 281 ALDGQSLEGRALRVNVAEER 222 +++G + + L+V + + Sbjct: 461 SMNGFQIGMKRLKVQLKRSK 480 Score = 35.0 bits (79), Expect = 0.18 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = -2 Query: 494 VERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTG--RSRGFGFV 321 ++ P + + +++VG +P + L ELF ++G V + V+ DR +S+G FV Sbjct: 5 LDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFV 64 Query: 320 TMASQEELDDAIAAL 276 T +++ +A AL Sbjct: 65 TFYTRKAALEAQNAL 79 Score = 34.3 bits (77), Expect = 0.31 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++G + + ++ + +FS G++ + R++ D G SRG FVT ++ AI A Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKA 167 Query: 278 L-DGQSLEG 255 + Q++EG Sbjct: 168 MHQAQTMEG 176
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 50.8 bits (120), Expect = 3e-06 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Frame = -2 Query: 503 GARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGF 324 G R D + + NL +Q + L F +G + D + D+ + +S+GFGF Sbjct: 5 GGGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGF 64 Query: 323 VTMASQEELDDAIAALDGQSLEGRALRVNVAE-ERP 219 V + + + A+ DG+ ++GR LRV +A+ +RP Sbjct: 65 VRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRP 100
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 282 +I+VG L D + E +S+ G++ D V+ D T RSRGFGFVT + + E+D A+ Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83 Query: 281 ---ALDGQSLE 258 +DG++++ Sbjct: 84 RPHIIDGKTVD 94 Score = 47.4 bits (111), Expect = 3e-05 Identities = 23/87 (26%), Positives = 45/87 (51%) Frame = -2 Query: 545 VNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARV 366 ++G+ + +A PR + + S+ R+YV + + L E F+++G V + + Sbjct: 88 IDGKTVDPKRAVPRDDK--NRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEI 145 Query: 365 VYDRDTGRSRGFGFVTMASQEELDDAI 285 + D+ T + RGFGFVT + +D + Sbjct: 146 ILDKATQKPRGFGFVTFDDHDSVDQCV 172
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 50.4 bits (119), Expect = 4e-06 Identities = 28/76 (36%), Positives = 45/76 (59%) Frame = -2 Query: 467 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 288 + F +++ NLP+ ++ L ++F E G V+ A V D + G SRGFG V +++E+ A Sbjct: 217 NGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFN-GFSRGFGSVIYPTEDEMIRA 275 Query: 287 IAALDGQSLEGRALRV 240 I +G +EGR L V Sbjct: 276 IDTFNGMEVEGRVLEV 291 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/80 (35%), Positives = 39/80 (48%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 I+V NL + L ELF G+VV+A ++ + G RG G V E + DAI+ Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK--GHHRGMGTVEFTKNESVQDAISKF 181 Query: 275 DGQSLEGRALRVNVAEERPP 216 DG R L V ++ PP Sbjct: 182 DGALFMDRKLMVR--QDNPP 199 Score = 32.7 bits (73), Expect = 0.89 Identities = 21/75 (28%), Positives = 37/75 (49%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 IY NLP+ S L +LF GK+ +A + ++ G+ G V + + D I L Sbjct: 351 IYCSNLPFSTARSDLFDLFGPIGKINNAE-LKPQENGQPTGVAVVEYENLVDADFCIQKL 409 Query: 275 DGQSLEGRALRVNVA 231 + + G +L+++ A Sbjct: 410 NNYNYGGCSLQISYA 424
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 50.4 bits (119), Expect = 4e-06 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 4/129 (3%) Frame = -2 Query: 584 EAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGS----SFRIYVGNLPWQVDDS 417 E KAV +NGR + + + R ++ + S S ++VGNL + V D Sbjct: 194 EQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFVGNLSFDVTDD 253 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 L + F G +V R+ D+G+ +GF F+ ++E + + + + GR LR+ Sbjct: 254 LLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRME 313 Query: 236 VAEERPPRR 210 E+R R+ Sbjct: 314 YGEDRSKRQ 322
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 50.1 bits (118), Expect = 5e-06 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Frame = -2 Query: 545 VNGRLLTVNKAAPRGARVERPPRDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDAR 369 ++G+ + +A PR ER R++ S + ++VG L D+ L E F + G VV + Sbjct: 97 IDGKTVEAKRALPRP---ERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVK 153 Query: 368 VVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ D+ TG+ RGF FV + +D AI Sbjct: 154 LLTDKTTGKRRGFAFVEFDDYDAVDKAI 181 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 282 ++++G L + L + + GKVVD V+ D T RSRGFGF+T +D A Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92 Query: 281 ---ALDGQSLEGR 252 +DG+++E + Sbjct: 93 RPHIIDGKTVEAK 105
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 50.1 bits (118), Expect = 5e-06 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++++G L WQ L + FS+ G++ + V+ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79 Score = 46.6 bits (109), Expect = 6e-05 Identities = 25/86 (29%), Positives = 47/86 (54%) Frame = -2 Query: 551 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 372 ++++ + + A PR A+ + R +I+VG L + + F + GKV DA Sbjct: 84 HELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSANTVVEDVKQYFEQFGKVEDA 139 Query: 371 RVVYDRDTGRSRGFGFVTMASQEELD 294 +++D+ T R RGFGFVT +++ ++ Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVVE 165
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 50.1 bits (118), Expect = 5e-06 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++++G L WQ L + FS+ G++ + V+ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79 Score = 46.6 bits (109), Expect = 6e-05 Identities = 25/86 (29%), Positives = 47/86 (54%) Frame = -2 Query: 551 YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA 372 ++++ + + A PR A+ + R +I+VG L + + F + GKV DA Sbjct: 84 HELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSANTVVEDVKQYFEQFGKVEDA 139 Query: 371 RVVYDRDTGRSRGFGFVTMASQEELD 294 +++D+ T R RGFGFVT +++ ++ Sbjct: 140 MLMFDKTTNRHRGFGFVTFENEDVVE 165
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.1 bits (118), Expect = 5e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 ++++G L WQ L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/84 (32%), Positives = 45/84 (53%) Frame = -2 Query: 554 RYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVD 375 R++++ + + A PR A+ + R +I+VG L + F + GKV D Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKHYFEQFGKVDD 137 Query: 374 ARVVYDRDTGRSRGFGFVTMASQE 303 A +++D+ T R RGFGFVT S++ Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESED 161
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.1 bits (118), Expect = 5e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 ++++G L WQ L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/84 (32%), Positives = 45/84 (53%) Frame = -2 Query: 554 RYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVD 375 R++++ + + A PR A+ + R +I+VG L + F + GKV D Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKHYFEQFGKVDD 137 Query: 374 ARVVYDRDTGRSRGFGFVTMASQE 303 A +++D+ T R RGFGFVT S++ Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESED 161
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.1 bits (118), Expect = 5e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 ++++G L WQ L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79 Score = 49.7 bits (117), Expect = 7e-06 Identities = 27/84 (32%), Positives = 46/84 (54%) Frame = -2 Query: 554 RYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVD 375 R++++ + + A PR A+ + R +I+VG L + + F + GKV D Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTK----KIFVGGLSVNTTVEDVKQYFEQFGKVDD 137 Query: 374 ARVVYDRDTGRSRGFGFVTMASQE 303 A +++D+ T R RGFGFVT S++ Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESED 161
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/83 (28%), Positives = 43/83 (51%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 R+++ N+ + + +LFS +G++ + V D TG+S+GF +V E +A Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361 Query: 278 LDGQSLEGRALRVNVAEERPPRR 210 LD Q +GR L + A+ + R Sbjct: 362 LDKQIFQGRLLHILPADAKKTHR 384 Score = 44.3 bits (103), Expect = 3e-04 Identities = 29/80 (36%), Positives = 41/80 (51%) Frame = -2 Query: 464 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 S +I V NLP++ + ELFS G++ RV D +RGF FV E ++A+ Sbjct: 711 SGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPSEAENAM 769 Query: 284 AALDGQSLEGRALRVNVAEE 225 L G L GR L + AE+ Sbjct: 770 DQLQGVHLLGRRLVMQYAEQ 789 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 5/88 (5%) Frame = -2 Query: 470 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVY-----DRDTGRSRGFGFVTMASQ 306 G + I+V NL + ++L E F V A+V + D S GFGF+ ++ Sbjct: 609 GPTVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTK 668 Query: 305 EELDDAIAALDGQSLEGRALRVNVAEER 222 E+ IAA+DG ++G +++ ++ ++ Sbjct: 669 EQAGAVIAAMDGAVIDGHKIQLKISHKQ 696 Score = 35.0 bits (79), Expect = 0.18 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 9/86 (10%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELF---------SEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 306 R+ V LP ++++RL F ++ D ++V D+ +G SR F F+ S+ Sbjct: 3 RVIVKGLPIYLEEARLRAHFLKRLQQQGRGSEDQITDVKIVKDK-SGNSRRFAFIGYRSE 61 Query: 305 EELDDAIAALDGQSLEGRALRVNVAE 228 ++ DAI +G ++ + V +A+ Sbjct: 62 QDAFDAIEYFNGSFIDTARIEVAMAK 87
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/76 (31%), Positives = 46/76 (60%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 RI+VG + ++ ++S L + FS++G V + ++V DR G S+G+GFVT +QE+ + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 278 LDGQSLEGRALRVNVA 231 + + + + L + A Sbjct: 93 AEKLNYKDKKLNIGPA 108
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/76 (31%), Positives = 46/76 (60%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 RI+VG + ++ ++S L + FS++G V + ++V DR G S+G+GFVT +QE+ + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 278 LDGQSLEGRALRVNVA 231 + + + + L + A Sbjct: 93 AEKLNYKDKKLNIGPA 108
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 49.7 bits (117), Expect = 7e-06 Identities = 22/70 (31%), Positives = 41/70 (58%) Frame = -2 Query: 476 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 297 D S+ +++VG++P + + F +HG V++ ++ D+ TG+ +G FV A+ ++ Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174 Query: 296 DDAIAALDGQ 267 D AI AL Q Sbjct: 175 DRAIRALHNQ 184 Score = 42.0 bits (97), Expect = 0.001 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%) Frame = -2 Query: 596 STIEEAEKAVEMFH-RYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDD 420 +T ++A++A+ H + + G V G R R F+++VG+L Q + Sbjct: 169 ATSKDADRAIRALHNQITLPGGTGPVQVRYADGER----ERIGTLEFKLFVGSLNKQATE 224 Query: 419 SRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG-QSLEG--RA 249 + E+F + G V D ++ D + +SRG GFV +S+E AI L+G ++ G + Sbjct: 225 KEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 283 Query: 248 LRVNVAEERPPR 213 L V AE + P+ Sbjct: 284 LIVRFAEPKRPK 295
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 49.7 bits (117), Expect = 7e-06 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 +++VG L W+ + L + F ++G++ V D TGRSRGF F+ + E +D AA Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116 Score = 45.1 bits (105), Expect = 2e-04 Identities = 21/89 (23%), Positives = 44/89 (49%) Frame = -2 Query: 485 PPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 306 P + +I+VG L ++ D + F + G +V+ + +D+ + +GF F+T S+ Sbjct: 128 PKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSE 187 Query: 305 EELDDAIAALDGQSLEGRALRVNVAEERP 219 + + D + Q + G+ + V A +P Sbjct: 188 QVVTDLLKT-PKQKIAGKEVDVKRATPKP 215
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 49.7 bits (117), Expect = 7e-06 Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Frame = -2 Query: 473 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA-RVVYDRDTGRSRGFGFVTMASQEEL 297 S F ++VG+L ++ L+ LF K V RV+ D TG SR FGFV ++E Sbjct: 188 STPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDER 247 Query: 296 DDAIAALDGQSLEGRALRVNVAEER 222 A+ + G+ +GRALRV A R Sbjct: 248 RRALIEMSGKWFQGRALRVAYATPR 272
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 49.3 bits (116), Expect = 9e-06 Identities = 23/81 (28%), Positives = 43/81 (53%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 I+VG + + L LFS++G ++ +++YD+ G G+GF++ + I L Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 275 DGQSLEGRALRVNVAEERPPR 213 +G+++ G L +N ER R Sbjct: 257 NGRTVNGSTLFINYHVERKER 277 Score = 37.0 bits (84), Expect = 0.047 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 20/107 (18%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVY------------------- 360 P + +YV ++P D L + + G+++ +V+ Sbjct: 533 PMSNQQESNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDN 592 Query: 359 DRDTGRSRGFGFVTMASQEELDDAIAALDG-QSLEGRALRVNVAEER 222 D G SRG+GFV+ S + AI DG Q + + L V+ A++R Sbjct: 593 DLPVGSSRGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQKR 639
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 8/93 (8%) Frame = -2 Query: 485 PPRDS-------GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 327 PP DS G ++VG +P + + LV LF + G + D R++ D +G++RG+ Sbjct: 150 PPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYA 209 Query: 326 FVTMASQEELDDAIAALDGQSLE-GRALRVNVA 231 F+T +E +A+ D + G+ L V ++ Sbjct: 210 FITFCGKEAAQEAVKLCDSYEIRPGKHLGVCIS 242 Score = 32.0 bits (71), Expect = 1.5 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%) Frame = -2 Query: 563 MFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRI-YVGNLPWQVDDSRLVELFSEHG 387 M + V G ++TV A P VE P + + ++ +V NL V + L + FSE G Sbjct: 310 MSGKVKVWGNVVTVEWADP----VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFG 365 Query: 386 KVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEERPP 216 K+ + + D + FV + A+ ++G+ +EG + + +A +PP Sbjct: 366 KLERVKKLKD--------YAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLA--KPP 412
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 48.9 bits (115), Expect = 1e-05 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 7/110 (6%) Frame = -2 Query: 527 TVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDT 348 +V+ A A P FR++VG L S + LF G V + + R Sbjct: 22 SVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVR 81 Query: 347 GRSR----GFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA---EERP 219 +R G FVT +QE++D AI L+G++L+ R + V A +E+P Sbjct: 82 RGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQP 131 Score = 31.6 bits (70), Expect = 2.0 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 12/94 (12%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKV------------VDARVVYDRDTGRSRGFGFVTMA 312 IYV L + + L E+F + + R+ + R RGFGFV+ A Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266 Query: 311 SQEELDDAIAALDGQSLEGRALRVNVAEERPPRR 210 + E+ AI ++G+ + L V A R ++ Sbjct: 267 NAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQ 300
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 48.5 bits (114), Expect = 2e-05 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Frame = -2 Query: 581 AEKAVEMFHRYDVN-GRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 405 A +A+E H +++ GR L V + PR ++++I+VGN+ L Sbjct: 48 AVRAIEALHGHELRPGRALVVEMSRPRPL----------NTWKIFVGNVSAACTSQELRS 97 Query: 404 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 LF G+V++ VV D + FV M + + AIA L+G+ ++G+ + V ++ Sbjct: 98 LFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 48.5 bits (114), Expect = 2e-05 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Frame = -2 Query: 581 AEKAVEMFHRYDVN-GRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 405 A +A+E H +++ GR L V + PR ++++I+VGN+ L Sbjct: 48 AVRAIEALHGHELRPGRALVVEMSRPRPL----------NTWKIFVGNVSAACTSQELRS 97 Query: 404 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 LF G+V++ VV D + FV M + + AIA L+G+ ++G+ + V ++ Sbjct: 98 LFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 48.5 bits (114), Expect = 2e-05 Identities = 33/125 (26%), Positives = 64/125 (51%) Frame = -2 Query: 596 STIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDS 417 ++ E+A++A+ ++ ++ GR + + +G+ P S ++V L + Sbjct: 531 ASFEDAKEALNSCNKMEIEGRTIRLEL---QGSNSRSQP-----SKTLFVKGLSEDTTEE 582 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 L E F V AR+V DR+TG S+GFGFV S+E+ A A++ ++G + ++ Sbjct: 583 TLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 639 Query: 236 VAEER 222 A+ + Sbjct: 640 WAKPK 644 Score = 46.2 bits (108), Expect = 8e-05 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Frame = -2 Query: 584 EAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRD---SGSSFRIYVGNLPWQVDDSR 414 +AEK +E +++GR +++ +G R ER + SG S + + NL + Sbjct: 442 DAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKET 501 Query: 413 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 234 L E+F + + V G+ +G+ F+ AS E+ +A+ + + +EGR +R+ + Sbjct: 502 LEEVFEKATFI----KVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL 557 Score = 34.7 bits (78), Expect = 0.23 Identities = 28/134 (20%), Positives = 60/134 (44%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G + E+ EKA+E+ V G + + K R ++ R R + NL + Sbjct: 351 GYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGRDSKKVRAART------LLAKNLSF 403 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 + + L E+F + ++ R+V G+S+G ++ S+ + + + G ++GR Sbjct: 404 NITEDELKEVFED---AMEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 458 Query: 251 ALRVNVAEERPPRR 210 ++ + E+ R+ Sbjct: 459 SVSLYYTGEKGQRQ 472
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 48.5 bits (114), Expect = 2e-05 Identities = 33/96 (34%), Positives = 49/96 (51%) Frame = -2 Query: 506 RGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 327 R +R E+ G +F +V L + L LFS +GKVV A+VV + + +R +G Sbjct: 415 RLSREEKGRSSCGRNF--WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYG 472 Query: 326 FVTMASQEELDDAIAALDGQSLEGRALRVNVAEERP 219 FVTM++ EE I L L G+ + V A+ P Sbjct: 473 FVTMSTAEEATKCINHLHKTELHGKMISVEKAKSEP 508 Score = 37.4 bits (85), Expect = 0.036 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSS 462 G MST EEA K + H+ +++G++++V KA A P R G S Sbjct: 472 GFVTMSTAEEATKCINHLHKTELHGKMISVEKAKSEPAGKRVPDRRDGDS 521
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 48.5 bits (114), Expect = 2e-05 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Frame = -2 Query: 584 EAEKAVEMFHR-YDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 EA A+ M ++ L +N A+ G R + + S + I+VG+L V++ + Sbjct: 146 EASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISK--ASEYSIFVGDLSPNVNEFDVY 203 Query: 407 ELF-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 LF S + A+++ D T SRG+GFV + + A+A + GQ R +RV +A Sbjct: 204 SLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 48.5 bits (114), Expect = 2e-05 Identities = 29/80 (36%), Positives = 42/80 (52%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 I+VGNL + L E FS+ GKVV A ++ R G RG G V + +++D AI Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAIRQY 195 Query: 275 DGQSLEGRALRVNVAEERPP 216 DG R ++ V ++ PP Sbjct: 196 DGAFFMDR--KIFVRQDNPP 213 Score = 41.2 bits (95), Expect = 0.003 Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 22/151 (14%) Frame = -2 Query: 614 SGLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAP-----RGARVERPPRDS------- 471 SG I++ +A+E ++ Y + G +L V G V+ P DS Sbjct: 278 SGTVSFYDIKDLHRAIEKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDDSPVNEEAR 337 Query: 470 -------GSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFV 321 G R IY NLP+ S L +LF GKV +A + YD G G V Sbjct: 338 KFTENVVGGGERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYD-SKGAPTGIAVV 396 Query: 320 TMASQEELDDAIAALDGQSLEGRALRVNVAE 228 + ++ D I L+ + G L ++ A+ Sbjct: 397 EYDNVDDADVCIERLNNYNYGGCDLDISYAK 427
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/90 (31%), Positives = 49/90 (54%) Frame = -2 Query: 509 PRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGF 330 P G +++R D + V NLP ++++ L +LF + G+V+ + D+ TG +GF Sbjct: 163 PDGRQIDRNRSDENTC---RVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGF 219 Query: 329 GFVTMASQEELDDAIAALDGQSLEGRALRV 240 FVT S+++ AIA L+ + L+V Sbjct: 220 AFVTFESRDDAARAIAELNDIRMYHMVLKV 249
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/103 (26%), Positives = 48/103 (46%) Frame = -2 Query: 518 KAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRS 339 +A P+ E + R+++ N+ + + +LFS G++ + V D TG+S Sbjct: 326 RAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQS 385 Query: 338 RGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEERPPRR 210 +GF +V + +A LD Q +GR L + EE+ R Sbjct: 386 KGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGEEKKSHR 428 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/85 (34%), Positives = 44/85 (51%) Frame = -2 Query: 479 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 300 + + S +I V NLP++ + ELF+ G++ RV D +RGF FV +E Sbjct: 757 KSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKE 815 Query: 299 LDDAIAALDGQSLEGRALRVNVAEE 225 ++A+ L G L GR L + AEE Sbjct: 816 AENAMDQLHGVHLLGRRLVMQYAEE 840 Score = 38.5 bits (88), Expect = 0.016 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%) Frame = -2 Query: 470 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQ 306 G + I++ NL + + L + F V A+V D S GFGFV ++ Sbjct: 660 GPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTK 719 Query: 305 EELDDAIAALDGQSLEGRALRVNVAEER 222 E+ + IAA+DG ++G +++ ++ + Sbjct: 720 EQANAVIAAMDGTVIDGHKIQLKLSHRQ 747 Score = 35.8 bits (81), Expect = 0.11 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 15/92 (16%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGK---------------VVDARVVYDRDTGRSRGFGF 324 RI V LP + D L E F++ + + D +++ DR+ G SR FGF Sbjct: 3 RIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRN-GESRRFGF 61 Query: 323 VTMASQEELDDAIAALDGQSLEGRALRVNVAE 228 + ++E+ DA+ +G + + V++A+ Sbjct: 62 IGYRNEEDAFDAVEYFNGSFINTSKIEVSMAK 93
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 48.1 bits (113), Expect = 2e-05 Identities = 37/128 (28%), Positives = 58/128 (45%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G S+ E AE A + + ++G L + K + RG E +I + NLP+ Sbjct: 654 GFVEFSSKEAAEIAQKAMDGHVLDGHKLQL-KISNRGQDEETTETKKAIDSKILIKNLPF 712 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 + + +LF G + RV + SRGF F S +E + A++AL G L GR Sbjct: 713 EATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLGR 771 Query: 251 ALRVNVAE 228 L + A+ Sbjct: 772 RLVLQYAQ 779 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/73 (27%), Positives = 38/73 (52%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 R+++ NL + + +LFS++G++ + + + TG+ +GF V E A A Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEA 361 Query: 278 LDGQSLEGRALRV 240 DG+ +GR L + Sbjct: 362 QDGKIFQGRLLHI 374 Score = 40.0 bits (92), Expect = 0.006 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%) Frame = -2 Query: 530 LTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRD 351 L+ + G+ ERP S S ++V NL ++ L + F + A+V D Sbjct: 585 LSASDVMDTGSNDERPATASTS---VFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPD 641 Query: 350 TGR-----SRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 + S GFGFV +S+E + A A+DG L+G L++ ++ Sbjct: 642 SKNKGKFLSMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKIS 686
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/75 (29%), Positives = 38/75 (50%) Frame = -2 Query: 476 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 297 D S +Y+ LP D LV+L +GK+V + + D+ T + +G+GFV S Sbjct: 57 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAA 116 Query: 296 DDAIAALDGQSLEGR 252 A++AL ++ + Sbjct: 117 QKAVSALKASGVQAQ 131 Score = 46.6 bits (109), Expect = 6e-05 Identities = 22/82 (26%), Positives = 41/82 (50%) Frame = -2 Query: 503 GARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGF 324 G + + + +Y+ NLP +D+ L + G+V+ R++ D +G SRG GF Sbjct: 127 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGF 185 Query: 323 VTMASQEELDDAIAALDGQSLE 258 M S E+ + I +G+ ++ Sbjct: 186 ARMESTEKCEAVIGHFNGKFIK 207
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 48.1 bits (113), Expect = 2e-05 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Frame = -2 Query: 581 AEKAVEMFHRYDVN-GRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 405 A +A+E H +++ GR L V + PR ++++I+VGN+ L Sbjct: 48 ALRAIEALHGHELRPGRALVVEMSRPRPL----------NTWKIFVGNVSAACTSQELRS 97 Query: 404 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 LF G+V++ VV D + FV M + + AIA L+G+ ++G+ + V ++ Sbjct: 98 LFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 48.1 bits (113), Expect = 2e-05 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Frame = -2 Query: 581 AEKAVEMFHRYDVN-GRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVE 405 A +A+E H +++ GR L V + PR ++++I+VGN+ L Sbjct: 48 ALRAIEALHGHELRPGRALVVEMSRPRPL----------NTWKIFVGNVSAACTSQELRS 97 Query: 404 LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 LF G+V++ VV D + FV M + + AIA L+G+ ++G+ + V ++ Sbjct: 98 LFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 147
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 48.1 bits (113), Expect = 2e-05 Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAA--PRGARVERPPRDSGSSF-RIYVGNLPWQVDDS 417 E A+ A+E + + GR + V + + P+ +V ++ SF RIYV ++ + + Sbjct: 182 EGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEE 241 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRV 240 + +F G ++ ++ +G+GF+ A+++ +D+AIA+++ L G+ LRV Sbjct: 242 DIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRV 300
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/76 (28%), Positives = 46/76 (60%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 RI+VG + ++ +++ L + FS++G V + ++V DR G S+G+GF+T +QE+ + Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92 Query: 278 LDGQSLEGRALRVNVA 231 + + + + L + A Sbjct: 93 AEKLNYKDKKLNIGPA 108
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 47.8 bits (112), Expect = 3e-05 Identities = 22/75 (29%), Positives = 38/75 (50%) Frame = -2 Query: 476 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 297 D S +Y+ LP D LV+L +GK+V + + D+ T + +G+GFV S Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAA 116 Query: 296 DDAIAALDGQSLEGR 252 A++AL ++ + Sbjct: 117 QKAVSALKANGVQAQ 131 Score = 47.4 bits (111), Expect = 3e-05 Identities = 24/89 (26%), Positives = 43/89 (48%) Frame = -2 Query: 524 VNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTG 345 V+ G + + + +Y+ NLP +D+ L + G+V+ RV+ D +G Sbjct: 120 VSALKANGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSG 178 Query: 344 RSRGFGFVTMASQEELDDAIAALDGQSLE 258 SRG GF M S E+ + I +G+ ++ Sbjct: 179 ASRGVGFARMESTEKCEAVIGHFNGKFIK 207
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 47.8 bits (112), Expect = 3e-05 Identities = 28/81 (34%), Positives = 42/81 (51%) Frame = -2 Query: 482 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 303 P + ++VGNL +V + L ELF + G + + DR+ G+ + FGFV E Sbjct: 3 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPE 61 Query: 302 ELDDAIAALDGQSLEGRALRV 240 + AIA L+G L GR + V Sbjct: 62 SVSYAIALLNGIRLYGRPINV 82
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 47.8 bits (112), Expect = 3e-05 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Frame = -2 Query: 482 PRDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 306 P G +F+ ++V + + +S+L F +G + +VY + +G+ RG+ F+ + Sbjct: 95 PNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHE 154 Query: 305 EELDDAIAALDGQSLEGRALRVNVAEER 222 ++ A DG+ ++GR + V+V R Sbjct: 155 RDMHSAYKHADGKKIDGRRVLVDVERGR 182
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 47.8 bits (112), Expect = 3e-05 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Frame = -2 Query: 482 PRDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 306 P G +F+ ++V + + +S+L F +G + +VY + +G+ RG+ F+ + Sbjct: 95 PNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHE 154 Query: 305 EELDDAIAALDGQSLEGRALRVNVAEER 222 ++ A DG+ ++GR + V+V R Sbjct: 155 RDMHSAYKHADGKKIDGRRVLVDVERGR 182
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 47.8 bits (112), Expect = 3e-05 Identities = 32/96 (33%), Positives = 50/96 (52%) Frame = -2 Query: 506 RGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 327 R ++ E+ G +F +V L + L LFS++GKVV A+VV + + +R +G Sbjct: 393 RLSKEEKGRSSCGRNF--WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYG 450 Query: 326 FVTMASQEELDDAIAALDGQSLEGRALRVNVAEERP 219 FVTM++ EE I L L G+ + V A+ P Sbjct: 451 FVTMSTAEEATKCINHLHKTELHGKMISVEKAKNEP 486 Score = 32.7 bits (73), Expect = 0.89 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKA 513 G MST EEA K + H+ +++G++++V KA Sbjct: 450 GFVTMSTAEEATKCINHLHKTELHGKMISVEKA 482
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 47.8 bits (112), Expect = 3e-05 Identities = 26/109 (23%), Positives = 53/109 (48%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPW 432 G S + E + A+ + ++GR++ +A R + P + +++VG + Sbjct: 53 GFVTFSCMNEVDAAMAT-RPHTIDGRVVEPKRAVAREESAK--PGAHVTVKKLFVGGIKE 109 Query: 431 QVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 ++ L E F E+GK+ ++ D+ +G+ RGF FVT + +D + Sbjct: 110 DTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158 Score = 46.2 bits (108), Expect = 8e-05 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 282 ++++G L ++ + L + + G + D V+ D + RSRGFGFVT + E+D A+A Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69 Query: 281 ---ALDGQSLE 258 +DG+ +E Sbjct: 70 RPHTIDGRVVE 80
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 47.4 bits (111), Expect = 3e-05 Identities = 26/76 (34%), Positives = 40/76 (52%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 IYVG L +V + L F G + D ++ D ++ R RGF F+ E+ AI + Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 275 DGQSLEGRALRVNVAE 228 + L GR +RVN+A+ Sbjct: 68 NDSELCGRTIRVNLAK 83
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/120 (26%), Positives = 55/120 (45%) Frame = -2 Query: 581 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 402 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKTSTKLHVGNISPTCTNKELRAK 97 Query: 401 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 F E+G V++ +V D + FV M E+ +AI LD +G+ + V ++ R Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/79 (24%), Positives = 41/79 (51%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 278 LDGQSLEGRALRVNVAEER 222 L L G + V ++ + Sbjct: 55 LHHYKLHGVNINVEASKNK 73
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/120 (26%), Positives = 55/120 (45%) Frame = -2 Query: 581 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 402 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAK 97 Query: 401 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 F E+G V++ +V D + FV M E+ +AI LD +G+ + V ++ R Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/79 (24%), Positives = 41/79 (51%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 278 LDGQSLEGRALRVNVAEER 222 L L G + V ++ + Sbjct: 55 LHHYKLHGVNINVEASKNK 73
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/120 (26%), Positives = 55/120 (45%) Frame = -2 Query: 581 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 402 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAK 97 Query: 401 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 F E+G V++ +V D + FV M E+ +AI LD +G+ + V ++ R Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/79 (24%), Positives = 41/79 (51%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 278 LDGQSLEGRALRVNVAEER 222 L L G + V ++ + Sbjct: 55 LHHYKLHGVNINVEASKNK 73
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 47.0 bits (110), Expect = 5e-05 Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 3/129 (2%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF---RIYVGNLPWQVDDS 417 + A +A+EM R V GR + V+ + + +S ++++ LP+ Sbjct: 775 KSALQALEM-DRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKE 833 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 L E+ HG V D R+V +R G+ +G +V ++ + A+ +DG +++ ++V Sbjct: 834 ELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENVIKVA 892 Query: 236 VAEERPPRR 210 ++ PP+R Sbjct: 893 IS--NPPQR 899
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 47.0 bits (110), Expect = 5e-05 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 5/136 (3%) Frame = -2 Query: 611 GLSPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRG-----ARVERPPRDSGSSFRIYV 447 G + T E+A + ++G L + + +G A ++ ++ G +I V Sbjct: 700 GFAEFKTKEQANAVISAMEGTILDGHKLQLKLSHRQGTSTTNASSKKKKKNQG---KIIV 756 Query: 446 GNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQ 267 NLP++ + ELFS G++ RV D +RGF FV +E ++A+ L G Sbjct: 757 KNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQLQGV 815 Query: 266 SLEGRALRVNVAEERP 219 L GR L + E+ P Sbjct: 816 HLLGRRLVMEFVEQDP 831 Score = 46.2 bits (108), Expect = 8e-05 Identities = 21/79 (26%), Positives = 42/79 (53%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 R+++ N+ + + +LFS +G++ + + D TG+S+GF +V + + A Sbjct: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390 Query: 278 LDGQSLEGRALRVNVAEER 222 LD Q +GR L + A+ + Sbjct: 391 LDKQIFQGRLLHILPADAK 409 Score = 38.9 bits (89), Expect = 0.012 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Frame = -2 Query: 473 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMAS 309 +G + I++ NL + +L E F V A+V D + S GFGF + Sbjct: 647 AGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKT 706 Query: 308 QEELDDAIAALDGQSLEGRALRVNVAEER 222 +E+ + I+A++G L+G L++ ++ + Sbjct: 707 KEQANAVISAMEGTILDGHKLQLKLSHRQ 735
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/120 (26%), Positives = 55/120 (45%) Frame = -2 Query: 581 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 402 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAK 97 Query: 401 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 F E+G V++ +V D + FV M E+ +AI LD +G+ + V ++ R Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/79 (24%), Positives = 41/79 (51%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 278 LDGQSLEGRALRVNVAEER 222 L L G + V ++ + Sbjct: 55 LHHYKLHGVNINVEASKNK 73
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/120 (26%), Positives = 55/120 (45%) Frame = -2 Query: 581 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 402 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAK 97 Query: 401 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 F E+G V++ +V D + FV M E+ +AI LD +G+ + V ++ R Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/79 (24%), Positives = 41/79 (51%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 278 LDGQSLEGRALRVNVAEER 222 L L G + V ++ + Sbjct: 55 LHHYKLHGVNINVEASKNK 73
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/120 (26%), Positives = 55/120 (45%) Frame = -2 Query: 581 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 402 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKTSTKLHVGNISPTCTNKELRAK 97 Query: 401 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 F E+G V++ +V D + FV M E+ +AI LD +G+ + V ++ R Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/79 (24%), Positives = 41/79 (51%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 278 LDGQSLEGRALRVNVAEER 222 L L G + V ++ + Sbjct: 55 LHHYKLHGVNINVEASKNK 73
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/120 (26%), Positives = 55/120 (45%) Frame = -2 Query: 581 AEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVEL 402 AE A+ H Y ++G + +N VE S +S +++VGN+ + L Sbjct: 48 AEDAIRNLHHYKLHG--VNIN--------VEASKNKSKASTKLHVGNISPTCTNQELRAK 97 Query: 401 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 F E+G V++ +V D + FV M E+ +AI LD +G+ + V ++ R Sbjct: 98 FEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/79 (24%), Positives = 41/79 (51%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 ++++GNLP + + + LF ++GKV++ ++ + +GFV + + +DAI Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 278 LDGQSLEGRALRVNVAEER 222 L L G + V ++ + Sbjct: 55 LHHYKLHGVNINVEASKNK 73
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/114 (28%), Positives = 51/114 (44%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 E+A+ A++MFH+Y G+ L V + P D+ + + N+P Sbjct: 114 EQAQNAIQMFHQYSFRGKDLIV----------QLQPTDA----LLCITNVPISFTSEEFE 159 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 246 EL +G + +VY TG S+G+GFV ++ A L G+ L AL Sbjct: 160 ELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASAL 213 Score = 30.4 bits (67), Expect = 4.4 Identities = 18/72 (25%), Positives = 35/72 (48%) Frame = -2 Query: 425 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 246 D L+++FS K V ++ D + GF V ++ E+ ++ A DG +++G + Sbjct: 244 DSEELLQIFSSVHKPVFCQLAQDEGSYVG-GFAVVEYSTAEQAEEVQQAADGMTIKGSKV 302 Query: 245 RVNVAEERPPRR 210 +V+ P R Sbjct: 303 QVSFCAPGAPGR 314
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 46.6 bits (109), Expect = 6e-05 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Frame = -2 Query: 485 PPRDSGSSFR-------IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 327 PP DS S + I+VG +P + + LV LF + G + D R++ D TG +RG+ Sbjct: 147 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 206 Query: 326 FVTMASQEELDDAI 285 FVT ++E +A+ Sbjct: 207 FVTFCTKEAAQEAV 220
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 46.6 bits (109), Expect = 6e-05 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Frame = -2 Query: 485 PPRDSGSSFR-------IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 327 PP DS S + I+VG +P + + LV LF + G + D R++ D TG +RG+ Sbjct: 147 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 206 Query: 326 FVTMASQEELDDAI 285 FVT ++E +A+ Sbjct: 207 FVTFCTKEAAQEAV 220
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 46.6 bits (109), Expect = 6e-05 Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 4/131 (3%) Frame = -2 Query: 602 PMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDS---GSSFR-IYVGNLP 435 P + E E+ +E R + R V ++ P D G +F+ ++V + Sbjct: 56 PPTRAETREERMERKRREKIERRQQDVENEL----KIWDPHNDQNAQGDAFKTLFVARVN 111 Query: 434 WQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEG 255 + +S+L F +G + +VY++ +G+ RG+ F+ + ++ A DG+ ++G Sbjct: 112 YDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171 Query: 254 RALRVNVAEER 222 R + V+V R Sbjct: 172 RRVLVDVERGR 182
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 46.6 bits (109), Expect = 6e-05 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 7/74 (9%) Frame = -2 Query: 485 PPRDSGSSFR-------IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFG 327 PP DS S + I+VG +P + + LV LF + G + D R++ D TG +RG+ Sbjct: 57 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 116 Query: 326 FVTMASQEELDDAI 285 FVT ++E +A+ Sbjct: 117 FVTFCTKEAAQEAV 130
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 46.6 bits (109), Expect = 6e-05 Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 3/129 (2%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSF---RIYVGNLPWQVDDS 417 + A +A+EM R V GR + V+ + + +S ++++ LP+ Sbjct: 757 KSALQALEM-DRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSLEKHKLFISGLPFSCTKE 815 Query: 416 RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 237 L E+ HG V D R+V +R G+ +G +V ++ + A+ +DG +++ ++V Sbjct: 816 ELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 874 Query: 236 VAEERPPRR 210 ++ PP+R Sbjct: 875 IS--NPPQR 881
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/78 (33%), Positives = 44/78 (56%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 276 ++VG LP +L ELFS+ G V VV ++ + RGFG+VT + E++ A+ + Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 275 DGQSLEGRALRVNVAEER 222 + EG + V VA+++ Sbjct: 65 --TTFEGCKINVTVAKKK 80 Score = 45.4 bits (106), Expect = 1e-04 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Frame = -2 Query: 605 SPMSTIEEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQV 426 S ST E+ +KAV++ ++ + + P D +++ NL + Sbjct: 304 SDTSTEEQEDKAVQVSNK------------------KKRKLPSDVNEGKTVFIRNLSFDS 345 Query: 425 DDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALD------GQS 264 ++ L EL + G++ R+V DT S+G F +QE + A G Sbjct: 346 EEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLK 405 Query: 263 LEGRALRVNVAEER 222 L+GR L+V++A R Sbjct: 406 LDGRQLKVDLAVTR 419 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/97 (23%), Positives = 48/97 (49%) Frame = -2 Query: 521 NKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR 342 N P+ + + + R+ + NL ++ + L +F++ G V++ + D G+ Sbjct: 93 NSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPD-GK 151 Query: 341 SRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 231 RGFGFV + E A+ ++ + ++GR + V+ A Sbjct: 152 MRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWA 188
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 46.2 bits (108), Expect = 8e-05 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%) Frame = -2 Query: 542 NGRLLTVNKAAPRGARVERPPRDSG-----------SSFRIYVGNLPWQVDDSRLVELFS 396 N +L + AP R P G S +Y+ L D LV+L Sbjct: 20 NKKLYVAQQMAPPSPRNSTPNSSGGGGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQ 79 Query: 395 EHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGR 252 +GK+V + + D+ T + +G+GFV S A+ AL ++ + Sbjct: 80 PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQ 127 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/93 (26%), Positives = 47/93 (50%) Frame = -2 Query: 536 RLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYD 357 + +T KA+ G + + + +Y+ NLP +D+ L + G+V+ R++ D Sbjct: 114 KAVTALKAS--GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRD 171 Query: 356 RDTGRSRGFGFVTMASQEELDDAIAALDGQSLE 258 +G SRG GF M S E+ + I +G+ ++ Sbjct: 172 -TSGASRGVGFARMESTEKCEAIITHFNGKYIK 203
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 46.2 bits (108), Expect = 8e-05 Identities = 27/80 (33%), Positives = 44/80 (55%) Frame = -2 Query: 461 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 + YVGNLP+ + +F + + R+V D+DT + +GF +V + L +A+ Sbjct: 41 YTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL- 98 Query: 281 ALDGQSLEGRALRVNVAEER 222 DG L R+LRV++AE R Sbjct: 99 TYDGALLGDRSLRVDIAEGR 118
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 46.2 bits (108), Expect = 8e-05 Identities = 27/80 (33%), Positives = 44/80 (55%) Frame = -2 Query: 461 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 282 + YVGNLP+ + +F + + R+V D+DT + +GF +V + L +A+ Sbjct: 41 YTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL- 98 Query: 281 ALDGQSLEGRALRVNVAEER 222 DG L R+LRV++AE R Sbjct: 99 TYDGALLGDRSLRVDIAEGR 118
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 46.2 bits (108), Expect = 8e-05 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = -2 Query: 467 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 288 S +IY+ NLP + + ++VEL G ++ +++ + G S+GF F + + + A Sbjct: 308 SKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVA 367 Query: 287 IAALDGQSLEGRALRVNVA 231 I+ LDG+ G L A Sbjct: 368 ISGLDGKDTYGNKLHAQFA 386
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 46.2 bits (108), Expect = 8e-05 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 1/120 (0%) Frame = -2 Query: 578 EKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFR-IYVGNLPWQVDDSRLVEL 402 EKA E +YD N P +G ++ ++V L ++ +S++ Sbjct: 115 EKAAEDLKKYDPNN-----------------DPNATGDPYKTLFVSRLNYESSESKIKRE 157 Query: 401 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAEER 222 F +G + +V D+ T + +G+ F+ ++ A DGQ ++GR + V+V R Sbjct: 158 FESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGR 217
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/79 (31%), Positives = 41/79 (51%) Frame = -2 Query: 467 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 288 S+ ++++G LP ++D ++ EL + G + +V D TG S+G+ F D A Sbjct: 257 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 316 Query: 287 IAALDGQSLEGRALRVNVA 231 IA L+G L + L V A Sbjct: 317 IAGLNGMQLGDKKLLVQRA 335 Score = 33.9 bits (76), Expect = 0.40 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 5/86 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKV-----VDARVVYDRDTGRSRGFGFVTMASQEELD 294 R+YVGN+P+ + + +++ F+ ++ V + + F F+ S +E Sbjct: 150 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 209 Query: 293 DAIAALDGQSLEGRALRVNVAEERPP 216 A+ A DG +G++L++ + P Sbjct: 210 QAM-AFDGIIFQGQSLKIRRPHDYQP 234
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/79 (31%), Positives = 41/79 (51%) Frame = -2 Query: 467 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 288 S+ ++++G LP ++D ++ EL + G + +V D TG S+G+ F D A Sbjct: 257 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 316 Query: 287 IAALDGQSLEGRALRVNVA 231 IA L+G L + L V A Sbjct: 317 IAGLNGMQLGDKKLLVQRA 335 Score = 33.9 bits (76), Expect = 0.40 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 5/86 (5%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKV-----VDARVVYDRDTGRSRGFGFVTMASQEELD 294 R+YVGN+P+ + + +++ F+ ++ V + + F F+ S +E Sbjct: 150 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 209 Query: 293 DAIAALDGQSLEGRALRVNVAEERPP 216 A+ A DG +G++L++ + P Sbjct: 210 QAM-AFDGIIFQGQSLKIRRPHDYQP 234
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/89 (33%), Positives = 43/89 (48%) Frame = -2 Query: 512 APRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRG 333 A R A SG S +I + NLP++ + +LFS G++ R+ D +RG Sbjct: 702 ARRNAEASTTSISSGGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFD-NTTRG 760 Query: 332 FGFVTMASQEELDDAIAALDGQSLEGRAL 246 FGFV ++ E A+ AL L GR L Sbjct: 761 FGFVEYSTVREAQSAMEALKHTHLLGRHL 789 Score = 43.5 bits (101), Expect = 5e-04 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = -2 Query: 464 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 285 S R+++ NLP+ ++ F G V + D+ T S+G FV+ + A Sbjct: 313 SGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAY 372 Query: 284 AALDGQSLEGRALRV 240 A DG + +GR L + Sbjct: 373 RAKDGSTFQGRLLHL 387 Score = 43.1 bits (100), Expect = 7e-04 Identities = 25/78 (32%), Positives = 43/78 (55%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 R+ V LP + D+RL E FS+ G V D +++ R G SR FGFV S++E A+ Sbjct: 3 RLIVRGLPSYLTDARLREHFSQKGAVTDVKLM-RRPDGTSRKFGFVGYRSEQEAQQALDY 61 Query: 278 LDGQSLEGRALRVNVAEE 225 + ++ + + +A++ Sbjct: 62 FNRTFIDTSRISIELAKK 79 Score = 35.4 bits (80), Expect = 0.14 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Frame = -2 Query: 455 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQEELDD 291 +YV NL + D RL F AR+ D R S G+GFV S + Sbjct: 623 LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAART 682 Query: 290 AIAALDGQSLEGRALRVNVA 231 A A+DG+ L+ L V A Sbjct: 683 AQKAMDGKVLDAHTLVVTFA 702
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 45.8 bits (107), Expect = 1e-04 Identities = 32/114 (28%), Positives = 51/114 (44%) Frame = -2 Query: 587 EEAEKAVEMFHRYDVNGRLLTVNKAAPRGARVERPPRDSGSSFRIYVGNLPWQVDDSRLV 408 E+A+ A++ FH++ GR LTV + P D+ + + NLP Sbjct: 103 EQAQSAIQRFHQFSFRGRELTV----------QLQPTDA----LLCITNLPISFTLEEFE 148 Query: 407 ELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRAL 246 EL +G + +VY TG S+G+GFV ++ A L G+ + AL Sbjct: 149 ELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQMGASAL 202
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/76 (32%), Positives = 44/76 (57%) Frame = -2 Query: 458 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 279 RI+VG + ++ L +FS +G V +++ DR G S+G+GFVT +++E A Sbjct: 34 RIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRLQA- 91 Query: 278 LDGQSLEGRALRVNVA 231 DG+ + R ++N+A Sbjct: 92 -DGECVVLRDRKLNIA 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,029,069 Number of Sequences: 219361 Number of extensions: 2237986 Number of successful extensions: 8263 Number of sequences better than 10.0: 462 Number of HSP's better than 10.0 without gapping: 7375 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8108 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
