ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4n24 |
|---|---|
| Clone Library Name | barley_pub |
>KPPR_WHEAT (P26302) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 404 Score = 133 bits (334), Expect = 3e-31 Identities = 65/66 (98%), Positives = 65/66 (98%) Frame = -2 Query: 500 GQFDRLDELIYVESHXSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYE 321 GQFDRLDELIYVESH SNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYE Sbjct: 329 GQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYE 388 Query: 320 QIIAER 303 QIIAER Sbjct: 389 QIIAER 394
>KPPR_ARATH (P25697) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 395 Score = 129 bits (324), Expect = 4e-30 Identities = 62/66 (93%), Positives = 64/66 (96%) Frame = -2 Query: 500 GQFDRLDELIYVESHXSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYE 321 GQFDRLDELIYVESH SNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYE Sbjct: 321 GQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYE 380 Query: 320 QIIAER 303 Q+IA + Sbjct: 381 QLIANK 386
>KPPR_MESCR (P27774) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 397 Score = 125 bits (315), Expect = 5e-29 Identities = 60/66 (90%), Positives = 63/66 (95%) Frame = -2 Query: 500 GQFDRLDELIYVESHXSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYE 321 GQFDRLDELIYVESH SNLSTKFYGEVTQQMLKH DFPGSNNGTGLFQTIVGLKIRDL+E Sbjct: 322 GQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQDFPGSNNGTGLFQTIVGLKIRDLFE 381 Query: 320 QIIAER 303 Q+IA + Sbjct: 382 QLIASK 387
>KPPR_SPIOL (P09559) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 402 Score = 120 bits (302), Expect = 2e-27 Identities = 56/66 (84%), Positives = 61/66 (92%) Frame = -2 Query: 500 GQFDRLDELIYVESHXSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYE 321 G FDRLDELIYVESH SNLSTKFYGEVTQQMLKH +FPGSNNGTG FQTI+GLKIRDL+E Sbjct: 327 GMFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQNFPGSNNGTGFFQTIIGLKIRDLFE 386 Query: 320 QIIAER 303 Q++A R Sbjct: 387 QLVASR 392
>KPPR_CHLRE (P19824) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)| (Phosphopentokinase) (PRKase) (PRK) Length = 375 Score = 109 bits (272), Expect = 5e-24 Identities = 49/63 (77%), Positives = 59/63 (93%) Frame = -2 Query: 500 GQFDRLDELIYVESHXSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYE 321 GQFD+L+ELIYVESH SN S KFYGE+TQQMLK++ FPGSNNGTGLFQTIVGLK+R++YE Sbjct: 306 GQFDKLEELIYVESHLSNTSAKFYGEITQQMLKNSGFPGSNNGTGLFQTIVGLKVREVYE 365 Query: 320 QII 312 +I+ Sbjct: 366 RIV 368
>KPPR_SYNY3 (P37101) Phosphoribulokinase (EC 2.7.1.19) (Phosphopentokinase)| (PRKase) (PRK) Length = 332 Score = 92.8 bits (229), Expect = 5e-19 Identities = 38/65 (58%), Positives = 55/65 (84%) Frame = -2 Query: 500 GQFDRLDELIYVESHXSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYE 321 G+F+ L+E++YVE+H S TK+YGE+T+ +LKH D+PG++NGTGLFQ +VGLK+R +YE Sbjct: 261 GRFENLEEMVYVENHLSKTGTKYYGEMTELLLKHKDYPGTDNGTGLFQVLVGLKMRKVYE 320 Query: 320 QIIAE 306 Q+ AE Sbjct: 321 QLTAE 325
>CARB_SULAC (Q4J8E8) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1052 Score = 32.3 bits (72), Expect = 0.73 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = +1 Query: 100 HGEDFREVQNAGFHEFCSELSTVF*L*YIQTSHKKREDAHSH*VGDEMIHELEFGAHQTF 279 +G V+ AG H + +S F +T HK +E HS + E+ + F F Sbjct: 769 YGVVLEHVEEAGVHSGDATISIPFKKLSPETVHKMKESIHS--ISRELNIKGPFNVQ--F 824 Query: 280 AASAGTPALSAM-ICS*RSLIFSPTIVWKRPVPLLLPG 390 GTP + M + + RS+ FS +V K + L L G Sbjct: 825 VVKNGTPYIIEMNLRASRSMPFSSKVVGKNIIDLALTG 862
>PALFB_EUGGR (P84737) Photoactivated adenylate cyclase alpha-subunit-like| protein FB Length = 1019 Score = 30.4 bits (67), Expect = 2.8 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 291 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 398 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVLLATDICSFTPLSEKCSLTEVWTIC 640
>PCYAA_EUGGR (Q8S9F2) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 3.6 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 291 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 398 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PCYAA_ASTLO (Q76L34) Photoactivated adenylate cyclase subunit alpha (EC| 4.6.1.1) (Photoactivated adenylyl cyclase alpha subunit) Length = 1019 Score = 30.0 bits (66), Expect = 3.6 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 291 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 398 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSERCSLTEVWTIC 640
>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like| protein ST- Length = 1019 Score = 30.0 bits (66), Expect = 3.6 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = +3 Query: 291 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 398 RN P+S ++ + +++ S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATDICSFTPLSEKCSLTEVWTIC 640
>PAL1F_EUGGR (P84738) Photoactivated adenylate cyclase alpha-subunit-like| protein 1224-5/1F Length = 1019 Score = 30.0 bits (66), Expect = 3.6 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = +3 Query: 291 RNAGPLSNDLFIEISNLQSYDSLEETCSIVAAWEVC 398 RN P+S ++ + + + S+ L E CS+ W +C Sbjct: 605 RNLQPVSVEVVMLATAISSFTPLSEKCSLTEVWTIC 640
>NU4M_APILI (P34853) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 447 Score = 29.6 bits (65), Expect = 4.7 Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 2/94 (2%) Frame = -1 Query: 276 SLMSPKFKFMNHFITNSM-RMSILTFLVTSLNILQLEDGRKFTAELMKTCILNFSKILSM 100 S + + F+N + N M MS+L F++ S N+ + ++ ++++ K + + Sbjct: 329 SQTNSRLMFINKGMINFMPSMSLLWFMLCSSNMGSPVSLNLISEVMLLIGMISWLKFMML 388 Query: 99 MRVSY-VSS*HISMYIFSHVSMQKIHVLARIKSG 1 + + Y + S S+Y+F ++ KI ++ +IK+G Sbjct: 389 ILMMYCLFSFIYSIYLFMFINHGKIFIMFKIKNG 422
>MA2C1_HUMAN (Q9NTJ4) Alpha-mannosidase 2C1 (EC 3.2.1.24) (Alpha-D-mannoside| mannohydrolase) (Mannosidase alpha class 2C member 1) (Alpha mannosidase 6A8B) Length = 1040 Score = 29.3 bits (64), Expect = 6.2 Identities = 19/65 (29%), Positives = 26/65 (40%) Frame = +1 Query: 235 DEMIHELEFGAHQTFAASAGTPALSAMICS*RSLIFSPTIVWKRPVPLLLPGKSACFSIC 414 + M H + +H SA AL A L+ T+ WKR + LP S+ Sbjct: 591 EAMCHYEDIRSHGNTLLSAAAAALCAGEPGPEGLLIVNTLPWKRIEVMALPKPGGAHSLA 650 Query: 415 CVTSP 429 VT P Sbjct: 651 LVTVP 655
>CALC3_ONCKI (P01265) Calcitonin-3| Length = 32 Score = 28.9 bits (63), Expect = 8.1 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -2 Query: 452 SNLSTKFYGEVTQQMLKHADFPGSNNGTGL 363 SNLST G+++Q + K FP +N G G+ Sbjct: 2 SNLSTCMLGKLSQDLHKLQTFPRTNTGAGV 31 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,101,836 Number of Sequences: 219361 Number of extensions: 1183008 Number of successful extensions: 3162 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3080 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3161 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
