ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4n23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RBS1_WHEAT (P00871) Ribulose bisphosphate carboxylase small chai... 28 7.4
2RBS2_WHEAT (P26667) Ribulose bisphosphate carboxylase small chai... 28 7.4

>RBS1_WHEAT (P00871) Ribulose bisphosphate carboxylase small chain PWS4.3,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit PWS4.3)
          Length = 174

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -1

Query: 79  AFRPPGCXXSGKA 41
           AFRPPGC  SGKA
Sbjct: 162 AFRPPGCEESGKA 174



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>RBS2_WHEAT (P26667) Ribulose bisphosphate carboxylase small chain PW9,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit PW9)
          Length = 175

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -1

Query: 79  AFRPPGCXXSGKA 41
           AFRPPGC  SGKA
Sbjct: 163 AFRPPGCEESGKA 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,455,733
Number of Sequences: 219361
Number of extensions: 61818
Number of successful extensions: 148
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 80,573,946
effective HSP length: 1
effective length of database: 80,354,585
effective search space used: 1928510040
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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