Clone Name | rbaak4n18 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | TNR6_PIG (O77736) Tumor necrosis factor receptor superfamily mem... | 30 | 1.3 | 2 | PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi... | 28 | 8.6 | 3 | BIM_HUMAN (O43521) Bcl-2-like protein 11 (Bcl2-interacting media... | 28 | 8.6 |
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>TNR6_PIG (O77736) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 332 Score = 30.4 bits (67), Expect = 1.3 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 188 REAEDPQGPHQGQLLCADPCAPG 120 RE+E P+G H+ C PC PG Sbjct: 42 RESECPEGQHREGQFCCQPCPPG 64
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 27.7 bits (60), Expect = 8.6 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = -2 Query: 167 GPHQGQLLCADPCAPGIPKGXALAELSPLPYPVQHSRIIHVLHXXVLVREAXSTG 3 GP + + A P PG+P+ A+L+ +P + + +L+ V VRE +G Sbjct: 555 GPAEAE---AVPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSG 606
>BIM_HUMAN (O43521) Bcl-2-like protein 11 (Bcl2-interacting mediator of cell| death) Length = 198 Score = 27.7 bits (60), Expect = 8.6 Identities = 15/54 (27%), Positives = 24/54 (44%) Frame = -2 Query: 176 DPQGPHQGQLLCADPCAPGIPKGXALAELSPLPYPVQHSRIIHVLHXXVLVREA 15 +P+G H G+ D C G P+G SP P+ + I + +L R + Sbjct: 43 NPEGNHGGE---GDSCPHGSPQGPLAPPASPGPFATRSPLFIFMRRSSLLSRSS 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,219,756 Number of Sequences: 219361 Number of extensions: 347378 Number of successful extensions: 1152 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1152 length of database: 80,573,946 effective HSP length: 43 effective length of database: 71,141,423 effective search space used: 1707394152 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)