ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4n18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TNR6_PIG (O77736) Tumor necrosis factor receptor superfamily mem... 30 1.3
2PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi... 28 8.6
3BIM_HUMAN (O43521) Bcl-2-like protein 11 (Bcl2-interacting media... 28 8.6

>TNR6_PIG (O77736) Tumor necrosis factor receptor superfamily member 6|
           precursor (FASLG receptor) (Apoptosis-mediating surface
           antigen FAS) (Apo-1 antigen) (CD95 antigen)
          Length = 332

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 188 REAEDPQGPHQGQLLCADPCAPG 120
           RE+E P+G H+    C  PC PG
Sbjct: 42  RESECPEGQHREGQFCCQPCPPG 64



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>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -2

Query: 167 GPHQGQLLCADPCAPGIPKGXALAELSPLPYPVQHSRIIHVLHXXVLVREAXSTG 3
           GP + +   A P  PG+P+    A+L+ +P   +   +  +L+  V VRE   +G
Sbjct: 555 GPAEAE---AVPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSG 606



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>BIM_HUMAN (O43521) Bcl-2-like protein 11 (Bcl2-interacting mediator of cell|
           death)
          Length = 198

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 176 DPQGPHQGQLLCADPCAPGIPKGXALAELSPLPYPVQHSRIIHVLHXXVLVREA 15
           +P+G H G+    D C  G P+G      SP P+  +    I +    +L R +
Sbjct: 43  NPEGNHGGE---GDSCPHGSPQGPLAPPASPGPFATRSPLFIFMRRSSLLSRSS 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,219,756
Number of Sequences: 219361
Number of extensions: 347378
Number of successful extensions: 1152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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