ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4n17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (E... 52 5e-07
2CAHC_TOBAC (P27141) Carbonic anhydrase, chloroplast precursor (E... 29 3.2
3CAH2_FLALI (P46513) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate... 29 3.2

>CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)|
           (Carbonate dehydratase)
          Length = 324

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 23/36 (63%), Positives = 23/36 (63%)
 Frame = -2

Query: 109 GXXXSFXXVXXWVRXGXPXXXKVQXECASMPFDDQC 2
           G   SF  V  WVR G P   KVQ ECASMPFDDQC
Sbjct: 240 GADDSFHFVEDWVRIGFPAKKKVQTECASMPFDDQC 275



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>CAHC_TOBAC (P27141) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)|
           (Carbonate dehydratase)
          Length = 321

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 97  SFXXVXXWVRXGXPXXXKVQXECASMPFDDQC 2
           S   +  WV+ G P   KVQ E     F DQC
Sbjct: 231 STAFIEDWVKIGLPAKAKVQGEHVDKCFADQC 262



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>CAH2_FLALI (P46513) Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase|
           2) (Fragment)
          Length = 190

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 85  VXXWVRXGXPXXXKVQXECASMPFDDQC 2
           +  WV+ G P   KV+  C ++ F D C
Sbjct: 104 IEQWVKLGLPAKSKVKANCNNLEFADLC 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,183,037
Number of Sequences: 219361
Number of extensions: 47319
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 80,573,946
effective HSP length: 12
effective length of database: 77,941,614
effective search space used: 1870598736
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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