ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4n08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ERG1_ORYSA (Q7GC09) Elicitor-responsive protein 1 (Fungal elicit... 38 0.020
2FER1_CAEEL (Q17388) Sperm vesicle fusion protein fer-1 32 0.82
3MERA_SHIFL (P08332) Mercuric reductase (EC 1.16.1.1) (Hg(II) red... 30 5.3
4FMT_BDEBA (Q6MJL7) Methionyl-tRNA formyltransferase (EC 2.1.2.9) 29 7.0
5PARM_ECOLI (P11904) Plasmid segregation protein parM (Protein st... 29 7.0
6MYOF_HUMAN (Q9NZM1) Myoferlin (Fer-1-like protein 3) 29 7.0
7PBOV1_HUMAN (Q9GZY1) Prostate and breast cancer overexpressed ge... 29 9.1
8Y1322_ARATH (Q9C8S6) C2 domain protein At1g63220 29 9.1

>ERG1_ORYSA (Q7GC09) Elicitor-responsive protein 1 (Fungal elicitor immediate|
           early-responsive gene 1 protein) (FIERG1) (17 kDa phloem
           protein) (RPP17)
          Length = 159

 Score = 37.7 bits (86), Expect = 0.020
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
 Frame = -3

Query: 522 IEVFDHDTFTKDDTMGDAEFGILDFVEIAMK----DLSHVRDDTVM--KTFHPE 379
           + + DHDTF++DD +G+A   + D + + M+    ++S  +   V+  KT+H E
Sbjct: 77  LRLMDHDTFSRDDFLGEATINVTDLISLGMEHGTWEMSESKHRVVLADKTYHGE 130



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>FER1_CAEEL (Q17388) Sperm vesicle fusion protein fer-1|
          Length = 2034

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 522  IEVFDHDTFTKDDTMGDAEFGILDFVE 442
            IE++D + F KD  +GD E  +LDF+E
Sbjct: 1796 IELWDKNKFRKDRLLGDIELDLLDFIE 1822



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>MERA_SHIFL (P08332) Mercuric reductase (EC 1.16.1.1) (Hg(II) reductase)|
          Length = 564

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 316 ILRDLPIFPCDVAVGREAVVLFRVERLHHRVITDMAQVLHGDLDEVKDAE--LCIAHGVI 489
           + R    F  D A+G      FR+E +  R  T  +QV +  ++ V+D E  L  AHG +
Sbjct: 298 LARSTLFFREDPAIGEAVTAAFRMEGIEVREHTQASQVAY--INGVRDGEFVLTTAHGEL 355

Query: 490 LGESVMV 510
             + ++V
Sbjct: 356 RADKLLV 362



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>FMT_BDEBA (Q6MJL7) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 318

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 250 DVNPLQVHDDLASVGVPQLQVDIL 321
           D+N LQ+HD LA +G   LQV+++
Sbjct: 163 DMNALQLHDVLAQLGAELLQVELM 186



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>PARM_ECOLI (P11904) Plasmid segregation protein parM (Protein stbA) (ParA|
           locus 36 kDa protein)
          Length = 320

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 211 IWPLQIKSPHHAW---DVNPLQVHDDLASVGVPQLQVDILRDLPI 336
           I P  + + + AW   DVN + VH  L + G+P  +VDI+  LP+
Sbjct: 60  ISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPL 104



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>MYOF_HUMAN (Q9NZM1) Myoferlin (Fer-1-like protein 3)|
          Length = 2061

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -3

Query: 525  KIEVFDHDTFTKDDTMGD 472
            KI V+D+DTFT+D+ +G+
Sbjct: 1619 KISVYDYDTFTRDEKVGE 1636



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>PBOV1_HUMAN (Q9GZY1) Prostate and breast cancer overexpressed gene 1 protein|
           (Protein UROC28) (UC28)
          Length = 135

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +1

Query: 175 EEETLRSRKATNIWPLQIKSPHHAWDVNPLQVHDDL--ASVGVPQLQVDILRDLPIFPCD 348
           +E+  RS+KAT      I+  HHA  + PLQ H  +  +S+    L  + +         
Sbjct: 56  KEKVKRSQKATEFIDYSIEQSHHA-ILTPLQTHLTMKGSSMKCSSLSSEAILFTLTLQLT 114

Query: 349 VAVGREAVVLFRVERLHHRVI 411
             +G E  +L+  + +H ++I
Sbjct: 115 QTLGLECCLLYLSKTIHPQII 135



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>Y1322_ARATH (Q9C8S6) C2 domain protein At1g63220|
          Length = 147

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
 Frame = -3

Query: 525 KIEVFDHDTFTKDDTMGDAEFGILD-FVE--------IAMKDLSHVRDDTVMKTFHPEED 373
           K ++FD D  T+DD +G+A   +   FVE          +KD  +  +  V  +F P E+
Sbjct: 68  KAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSEN 127

Query: 372 NCFSAD--SHITWKDGKVS 322
                D  S+  WK+ + S
Sbjct: 128 RSRGMDEESYGGWKNSEAS 146


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,467,269
Number of Sequences: 219361
Number of extensions: 1649555
Number of successful extensions: 4714
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4711
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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