ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4n05 |
|---|---|
| Clone Library Name | barley_pub |
>LEA1_HORVU (P14928) ABA-inducible protein PHV A1| Length = 213 Score = 71.6 bits (174), Expect = 2e-12 Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 4/76 (5%) Frame = -1 Query: 628 ETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSE----AMGKVSETVQA 461 ET Q+ ++RA + KDQTGS LGEK+EA + A+ETTEAAK+ +E A K S+T Q Sbjct: 87 ETAQAAKERAAQGKDQTGSALGEKTEAAKQKAAETTEAAKQKAAEATEAAKQKASDTAQY 146 Query: 460 GQDRAVEGKDQTASFL 413 ++ AV GKD+T S L Sbjct: 147 TKESAVAGKDKTGSVL 162 Score = 53.5 bits (127), Expect(2) = 7e-17 Identities = 35/75 (46%), Positives = 42/75 (56%), Gaps = 5/75 (6%) Frame = -2 Query: 333 QHVQDTAAEYTKDTPVAPKE---NVFQKAGGNIVGAATDAKDAVMNTLGMGGDK*DV--D 169 Q DTA +YTK++ VA K+ +V Q+AG +V A AKDAV NTLGMGGD D Sbjct: 138 QKASDTA-QYTKESAVAGKDKTGSVLQQAGETVVNAVVGAKDAVANTLGMGGDNTSATKD 196 Query: 168 GATKKITKDN*TRLR 124 T KD T R Sbjct: 197 ATTGATVKDTTTTTR 211 Score = 53.1 bits (126), Expect(2) = 7e-17 Identities = 27/78 (34%), Positives = 43/78 (55%) Frame = -1 Query: 643 RRMASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEAMGKVSETVQ 464 ++ A +T ++ + +A E + T GE +EA + A+E + + A K ET Q Sbjct: 31 KQKAGQTTEATKQKAGETAEATKQKTGETAEAAKQKAAEAKDKTAQTAQAAKDKTYETAQ 90 Query: 463 AGQDRAVEGKDQTASFLG 410 A ++RA +GKDQT S LG Sbjct: 91 AAKERAAQGKDQTGSALG 108 Score = 33.1 bits (74), Expect = 0.73 Identities = 22/73 (30%), Positives = 33/73 (45%) Frame = -1 Query: 643 RRMASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEAMGKVSETVQ 464 ++ AS+T Q ++ AV KD+TGS L + E V + +A V+ T+ Sbjct: 137 KQKASDTAQYTKESAVAGKDKTGSVLQQAGETVVNAVVGAKDA-----------VANTLG 185 Query: 463 AGQDRAVEGKDQT 425 G D KD T Sbjct: 186 MGGDNTSATKDAT 198
>LEA3_WHEAT (Q03968) Late embryogenesis abundant protein, group 3 (LEA)| (PMA2005) Length = 224 Score = 70.5 bits (171), Expect = 4e-12 Identities = 39/76 (51%), Positives = 51/76 (67%), Gaps = 4/76 (5%) Frame = -1 Query: 628 ETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSE----AMGKVSETVQA 461 ET QS ++RA + KDQT S LGEK+EA + A+ETTEAA++ +E A K SET Q Sbjct: 98 ETAQSAKERAAQGKDQTASTLGEKTEAAKQKAAETTEAARQKAAEATEAAKQKASETAQY 157 Query: 460 GQDRAVEGKDQTASFL 413 ++ AV GKD+T S L Sbjct: 158 TKESAVTGKDKTGSVL 173 Score = 54.7 bits (130), Expect(2) = 1e-16 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 11/86 (12%) Frame = -1 Query: 634 ASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEAMGKVSETVQAGQ 455 A +T ++ + +A E + T E +EA + ASET EA K+ +EA K ++T QA + Sbjct: 34 AGQTTEATKQKAGETTEATKQKAAETTEAAKQKASETAEATKQKAAEAKDKTAQTAQAAK 93 Query: 454 D-----------RAVEGKDQTASFLG 410 + RA +GKDQTAS LG Sbjct: 94 EKTYETAQSAKERAAQGKDQTASTLG 119 Score = 51.6 bits (122), Expect(2) = 1e-16 Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 5/68 (7%) Frame = -2 Query: 312 AEYTKDTPVAPKE---NVFQKAGGNIVGAATDAKDAVMNTLGMGGDK--*DVDGATKKIT 148 A+YTK++ V K+ +V Q+AG +V A AKDAV NTLGMGGD D T T Sbjct: 155 AQYTKESAVTGKDKTGSVLQQAGETVVNAVVGAKDAVANTLGMGGDNTITTKDNTTGATT 214 Query: 147 KDN*TRLR 124 KD T R Sbjct: 215 KDTTTTTR 222 Score = 36.6 bits (83), Expect = 0.066 Identities = 23/73 (31%), Positives = 34/73 (46%) Frame = -1 Query: 643 RRMASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEAMGKVSETVQ 464 ++ ASET Q ++ AV KD+TGS L + E V + +A V+ T+ Sbjct: 148 KQKASETAQYTKESAVTGKDKTGSVLQQAGETVVNAVVGAKDA-----------VANTLG 196 Query: 463 AGQDRAVEGKDQT 425 G D + KD T Sbjct: 197 MGGDNTITTKDNT 209
>LEA3_MAIZE (Q42376) Late embryogenesis abundant protein, group 3 (LEA)| Length = 221 Score = 47.0 bits (110), Expect(2) = 3e-12 Identities = 31/70 (44%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Frame = -2 Query: 315 AAEYTKDTPVAPKEN---VFQKAGGNIVGAATDAKDAVMNTLGMGGDK*DVDGATK---K 154 A +Y KDT V+ K+ V Q+A + AA KDAVM+TLGMGGD D T Sbjct: 150 AGQYAKDTAVSGKDKSGGVIQQATEQVKSAAAGRKDAVMSTLGMGGDNKQGDANTNTNTN 209 Query: 153 ITKDN*TRLR 124 TKD+ T R Sbjct: 210 TTKDSSTITR 219 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%) Frame = -1 Query: 643 RRMASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEAM----GKVS 476 + A ET ++ + +A E + GE +E + A ETTEAA++ ++AM K + Sbjct: 89 KHKAGETTEAAKQKAGETTEAAKQKAGETTETTKQKAGETTEAARQKAADAMEAAKQKAA 148 Query: 475 ETVQAGQDRAVEGKDQTASFL 413 E Q +D AV GKD++ + Sbjct: 149 EAGQYAKDTAVSGKDKSGGVI 169 Score = 43.9 bits (102), Expect(2) = 3e-12 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%) Frame = -1 Query: 634 ASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSE----AMGKVSETV 467 A+ GQ ++ + TGS+LG+K++ A ETTEA K E A K ET Sbjct: 48 AAGKGQDAKEATKQKASDTGSYLGKKTDEAKHKAGETTEATKHKAGETTEAAKQKAGETT 107 Query: 466 QAGQDRAVEGKDQTASFLG 410 +A + +A E + T G Sbjct: 108 EAAKQKAGETTETTKQKAG 126 Score = 40.4 bits (93), Expect = 0.005 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 11/82 (13%) Frame = -1 Query: 643 RRMASETGQSIQDRAVEAKDQTGSF-------LGEKSEAVTKSASETTEAAKKMGSE--- 494 ++ AS+TG + + EAK + G GE +EA + A ETTEAAK+ E Sbjct: 60 KQKASDTGSYLGKKTDEAKHKAGETTEATKHKAGETTEAAKQKAGETTEAAKQKAGETTE 119 Query: 493 -AMGKVSETVQAGQDRAVEGKD 431 K ET +A + +A + + Sbjct: 120 TTKQKAGETTEAARQKAADAME 141
>LEAD3_DAUCA (P83442) Late embryogenesis abundant protein Dc3| Length = 163 Score = 57.4 bits (137), Expect = 4e-08 Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 4/78 (5%) Frame = -1 Query: 634 ASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEAM----GKVSETV 467 ASE S +DR VE+KDQTGS++ +K+ AV ET +AAK+ AM K SE Sbjct: 40 ASEMAGSARDRTVESKDQTGSYVSDKAGAVKDKTCETAQAAKEKTGGAMQATKEKASEMG 99 Query: 466 QAGQDRAVEGKDQTASFL 413 ++ ++ AV GK++T + Sbjct: 100 ESAKETAVAGKEKTGGLM 117 Score = 35.0 bits (79), Expect = 0.19 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = -1 Query: 643 RRMASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAK 509 + ASE G+S ++ AV K++TG + +E V A TEA K Sbjct: 92 KEKASEMGESAKETAVAGKEKTGGLMSSAAEQVKGMAQGATEAVK 136 Score = 33.1 bits (74), Expect = 0.73 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = -1 Query: 565 GEKSEAVTKSASETTEAAKKMGSEAMGKVSETVQAGQDRAVEGKDQTASFL 413 GE + + + K A K SE + +DR VE KDQT S++ Sbjct: 12 GEPKGHAQEKTGQMADTMKDKAQAAKDKASEMAGSARDRTVESKDQTGSYV 62
>LEA76_BRANA (P13934) Late embryogenesis abundant protein 76 (LEA 76)| Length = 280 Score = 50.4 bits (119), Expect = 4e-06 Identities = 23/65 (35%), Positives = 37/65 (56%) Frame = -1 Query: 643 RRMASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEAMGKVSETVQ 464 + S+ Q+ Q++A E KD+TGS+L E EAV + A + + K+ A ET + Sbjct: 124 KEKTSQAAQTAQEKARETKDKTGSYLSETGEAVKQKAQDAAQYTKETAQNAAQYTKETAE 183 Query: 463 AGQDR 449 AG+D+ Sbjct: 184 AGKDK 188 Score = 35.4 bits (80), Expect = 0.15 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 7/75 (9%) Frame = -1 Query: 628 ETGQSI---QDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEA----MGKVSET 470 +TGQ++ +D+A E KD+T + ++ + A ET +AAK S+A K ET Sbjct: 20 KTGQAMGAMRDKAEEGKDKT----SQTAQKAQQKAQETAQAAKDKTSQAAQTTQQKAQET 75 Query: 469 VQAGQDRAVEGKDQT 425 QA +D+ + T Sbjct: 76 AQAAKDKTSQAAQTT 90
>LEA2_CICAR (O49817) Late embryogenesis abundant protein 2 (CapLEA-2)| Length = 155 Score = 36.6 bits (83), Expect = 0.066 Identities = 19/69 (27%), Positives = 34/69 (49%) Frame = -1 Query: 631 SETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEAMGKVSETVQAGQD 452 S+T Q+ +++ + + ++A + A +TT AK+ GSE ET Q+G+D Sbjct: 51 SQTAQAAKEKTQQTAQAAKDKTQQTTQATKEKAQDTTGRAKEKGSEMGQSTKETAQSGKD 110 Query: 451 RAVEGKDQT 425 + QT Sbjct: 111 NSAGFLQQT 119
>LEA1_CICAR (O49816) Late embryogenesis abundant protein 1 (CapLEA-1)| Length = 177 Score = 36.6 bits (83), Expect = 0.066 Identities = 23/75 (30%), Positives = 36/75 (48%) Frame = -1 Query: 649 RPRRMASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEAMGKVSET 470 + ++ A Q A AKD+T + +EA + A +TT A++ GSE ET Sbjct: 71 KTQQTAQAAKDETQQTAQAAKDKTQ----QTTEATKEKAQDTTGRAREKGSEMGQSTKET 126 Query: 469 VQAGQDRAVEGKDQT 425 Q+G+D + QT Sbjct: 127 AQSGKDNSAGFLQQT 141
>TIR3_YEAST (P40552) Cell wall protein TIR3 precursor| Length = 269 Score = 36.6 bits (83), Expect = 0.066 Identities = 22/72 (30%), Positives = 30/72 (41%) Frame = -1 Query: 634 ASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEAMGKVSETVQAGQ 455 ASE+ + A E+ S E S A + SASE++ AA SEA S +G Sbjct: 142 ASESSSAASSSASESSSAASSSASESSSAASSSASESSSAASSSASEAAKSSSSAKSSGS 201 Query: 454 DRAVEGKDQTAS 419 A +S Sbjct: 202 SAASSAASSASS 213 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Frame = -1 Query: 634 ASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASE---TTEAAKKMGSEAMGKVSETVQ 464 ASE+ + A E+ S E S A + SASE ++ +AK GS A + + Sbjct: 153 ASESSSAASSSASESSSAASSSASESSSAASSSASEAAKSSSSAKSSGSSAASSAASSAS 212 Query: 463 AGQDRAVEGKDQTAS 419 + A + +S Sbjct: 213 SKASSAASSSAKASS 227
>LEAD8_DAUCA (P20075) Embryonic protein DC-8| Length = 555 Score = 36.6 bits (83), Expect = 0.066 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 4/79 (5%) Frame = -1 Query: 634 ASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASE----TTEAAKKMGSEAMGKVSETV 467 A+ET + ++A EAKD T GE + + A E T E AK+ +GK++E Sbjct: 333 AAETKDATMEKAKEAKDTTVQKTGEYKDYAAEKAKEGKDVTVEKAKEGKDTTVGKMTELK 392 Query: 466 QAGQDRAVEGKDQTASFLG 410 + D A + D FLG Sbjct: 393 DSAADAARKAMDM---FLG 408 Score = 33.5 bits (75), Expect = 0.56 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Frame = -1 Query: 634 ASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKM--GSEAMGKVSETVQA 461 A+E + +A EAK++TG + K A K+A AA+K + GK E Sbjct: 184 AAEAKDTTAQKAAEAKEKTGEY---KDYAAQKAAEAKVLAAQKAAEAKDTTGKDGEYKDY 240 Query: 460 GQDRAVEGKDQTASFLG 410 +A E KD T G Sbjct: 241 AAQKAAEAKDATMQKTG 257 Score = 30.0 bits (66), Expect = 6.2 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 11/84 (13%) Frame = -1 Query: 640 RMASETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTE--------AAKKMGSE--- 494 +MA +T +A E KD T E E + A ET E A+K G Sbjct: 112 KMAKDTTMG---KAGEYKDYTAQKAEEAKEKAAQKAEETKEKAGEYKNYTAQKAGEAKDT 168 Query: 493 AMGKVSETVQAGQDRAVEGKDQTA 422 +GK E +A E KD TA Sbjct: 169 TLGKAGEYKDYAAQKAAEAKDTTA 192
>POLG_HCVEV (O39928) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3013 Score = 32.3 bits (72), Expect = 1.3 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +RRP+GR WG+PGYPW Sbjct: 67 ARRPTGRS--WGQPGYPW 82
>PDI_ALTAL (Q00002) Protein disulfide-isomerase (EC 5.3.4.1) (PDI) (Allergen| Alt a 4) (Fragment) Length = 436 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = -1 Query: 631 SETGQSIQDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEAMGKVS 476 SE ++++ A A D S E +++V +ASE T +A SEA S Sbjct: 379 SEGTETVKSGASVASDSASSAASEATKSVKSAASEVTNSASSAASEASASAS 430 Score = 30.4 bits (67), Expect = 4.8 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = -1 Query: 595 EAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEAMGKVSETVQAGQDRAVEGKDQTAS 419 E Q + +GE E T+SA + +A + A+ + +ETV++G A + AS Sbjct: 343 ERLTQASASVGEAVEDATESAKASASSATDSAASAVSEGTETVKSGASVASDSASSAAS 401
>DNAK_DEHSC (Q3ZYV1) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 636 Score = 31.2 bits (69), Expect = 2.8 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -1 Query: 565 GEKSEAVTKSASETTEAAKKMGSEAMGKVSETVQAGQDRAVEGK 434 G EA+ K+ E + A + +GS GK E A ++ + EGK Sbjct: 578 GNDVEAIKKTTQELSTALQSVGSAVYGKQQEGAPAQEEPSAEGK 621
>POLG_HCVSA (O91936) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3013 Score = 30.8 bits (68), Expect = 3.6 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +R+P+GR WG+PGYPW Sbjct: 67 ARQPTGRS--WGQPGYPW 82
>LEAD7_GOSHI (P13939) Late embryogenesis abundant protein D-7 (LEA D-7)| Length = 136 Score = 30.4 bits (67), Expect = 4.8 Identities = 18/63 (28%), Positives = 28/63 (44%) Frame = -1 Query: 610 QDRAVEAKDQTGSFLGEKSEAVTKSASETTEAAKKMGSEAMGKVSETVQAGQDRAVEGKD 431 + RA E +Q + EK+EA + ET EAAK+ E + + + + Sbjct: 14 EGRAHEKGEQMKESMKEKAEAAKQKTMETAEAAKQKTMETAEAAKQKTRGAAETTNDKTK 73 Query: 430 QTA 422 QTA Sbjct: 74 QTA 76
>Y399_ARCFU (O29848) Hypothetical protein AF0399| Length = 244 Score = 30.0 bits (66), Expect = 6.2 Identities = 14/52 (26%), Positives = 27/52 (51%) Frame = +2 Query: 158 LVAPSTSHLSPPIPSVFMTASLASVAAPTIFPPAFWKTFSLGATGVSLVYSA 313 L T H + P +VF +A+ A ++F P W+ F + +S++++A Sbjct: 72 LTVSPTMHFNTPSIAVFAVLLVATTIA-SVFKPKLWRAFLVAIVVISILHAA 122
>CREA_GIBFU (O94131) DNA-binding protein creA (Carbon catabolite repressor)| Length = 420 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +2 Query: 188 PPIPSVFMTASLASVAAPTIFPPAFWKTFSLGATGV 295 PP P +A +++A+P + PP + TF+L + V Sbjct: 157 PPAPKTIRSAPGSALASPNVSPPHSYSTFALPVSAV 192
>POLG_HCVGL (Q5EG65) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23)] (Fragment) Length = 828 Score = 30.0 bits (66), Expect = 6.2 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +RRP GR W +PGYPW Sbjct: 67 ARRPKGRN--WAQPGYPW 82
>LAMP3_HUMAN (Q9UQV4) Lysosome-associated membrane glycoprotein 3 precursor| (LAMP-3) (Lysosomal-associated membrane protein 3) (DC-lysosome-associated membrane glycoprotein) (DC LAMP) (Protein TSC403) (CD208 antigen) Length = 416 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +2 Query: 167 PSTSHLSPPIPSVFMTASLASVA-APTIFPPA 259 P+ SH +PP+ V + SLA + PTI PPA Sbjct: 111 PNNSHTAPPVTEVTVGPSLAPYSLPPTITPPA 142
>POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 29.6 bits (65), Expect = 8.1 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 11/27 (40%) Frame = +3 Query: 255 RPSGRRFP-----------WGRPGYPW 302 +P GRR P WGRPGYPW Sbjct: 56 QPRGRRQPIPKDRRSAGKSWGRPGYPW 82
>POLG_HCVBB (Q68749) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3036 Score = 29.6 bits (65), Expect = 8.1 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 11/27 (40%) Frame = +3 Query: 255 RPSGRRFP-----------WGRPGYPW 302 +P GRR P WGRPGYPW Sbjct: 56 QPRGRRQPIPKDRRSTGKSWGRPGYPW 82
>POLG_HCVJT (Q00269) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3009 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +RRP GR W +PGYPW Sbjct: 67 ARRPEGRA--WAQPGYPW 82
>POLG_HCVJA (P26662) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3009 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +RRP GR W +PGYPW Sbjct: 67 ARRPEGRT--WAQPGYPW 82
>POLG_HCVIN (Q913D4) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3010 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +RRP GR W +PGYPW Sbjct: 67 ARRPEGRS--WAQPGYPW 82
>POLG_HCVH9 (Q81754) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3010 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +RRP GR W +PGYPW Sbjct: 67 ARRPEGRS--WAQPGYPW 82
>POLG_HCVH (P27958) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/NT Length = 3010 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +RRP GR W +PGYPW Sbjct: 67 ARRPEGRT--WAQPGYPW 82
>POLG_HCVBK (P26663) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3009 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +RRP GR W +PGYPW Sbjct: 67 ARRPEGRT--WAQPGYPW 82
>POLG_HCV1 (P26664) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/NT Length = 3010 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +RRP GR W +PGYPW Sbjct: 67 ARRPEGRT--WAQPGYPW 82
>POLG_HCVJ2 (P27959) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70)] (Fragment) Length = 512 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +RRP GR W +PGYPW Sbjct: 67 ARRPEGRA--WAQPGYPW 82
>POLG_HCVED (O39929) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3007 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +RRP GR W +PGYPW Sbjct: 67 ARRPEGRS--WAQPGYPW 82
>POLG_HCVVP (O92532) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3014 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +R+P GR WG+PGYPW Sbjct: 67 ARQPIGRS--WGQPGYPW 82
>POLG_HCVHK (Q01403) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70)] (Fragment) Length = 519 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +RRP GR W +PGYPW Sbjct: 67 ARRPEGRA--WAQPGYPW 82
>POLG_HCVH4 (Q01404) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70)] (Fragment) Length = 519 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 249 SRRPSGRRFPWGRPGYPW 302 +RRP GR W +PGYPW Sbjct: 67 ARRPEGRA--WAQPGYPW 82 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,454,475 Number of Sequences: 219361 Number of extensions: 1566081 Number of successful extensions: 5991 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 5649 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5977 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
