ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4n02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase ... 226 2e-59
2RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase a... 173 1e-43
3RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase a... 169 2e-42
4RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase ... 164 8e-41
5RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase ... 124 7e-29
6RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase a... 124 1e-28
7RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase a... 119 3e-27
8RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase a... 117 1e-26
9RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase ... 111 6e-25
10RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase ... 110 1e-24
11RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase ... 110 1e-24
12RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase a... 110 2e-24
13RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase a... 104 1e-22
14RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase a... 103 2e-22
15RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase a... 73 2e-13
16RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase a... 57 2e-08
17RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase a... 45 9e-05
18GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 pre... 30 2.4
19CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like m... 30 3.1
20RPB7_SOYBN (P46279) DNA-directed RNA polymerase II 19 kDa polype... 29 5.3
21LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor 28 6.9
22BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein... 28 9.0
23DNLI_VARV (P33798) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleot... 28 9.0
24DNLI_VACCV (P16272) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleo... 28 9.0
25DNLI_VACCC (P20492) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleo... 28 9.0
26DNLI_VACCA (O57250) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleo... 28 9.0
27TTUC5_AGRVI (O34295) Probable tartrate dehydrogenase/decarboxyla... 28 9.0
28TTUC3_AGRVI (O34296) Probable tartrate dehydrogenase/decarboxyla... 28 9.0
29TTUC1_AGRVI (Q44471) Probable tartrate dehydrogenase/decarboxyla... 28 9.0

>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  226 bits (575), Expect = 2e-59
 Identities = 110/112 (98%), Positives = 110/112 (98%)
 Frame = -3

Query: 423 STGIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAX 244
           STGIENIGKRLVNSRDG VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAA 
Sbjct: 353 STGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 412

Query: 243 GDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 88
           GDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 413 GDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464



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>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  173 bits (439), Expect = 1e-43
 Identities = 82/112 (73%), Positives = 96/112 (85%)
 Frame = -3

Query: 423 STGIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAX 244
           S G+E IGKRLVNSR+G   FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAA 
Sbjct: 363 SLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAAL 422

Query: 243 GDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 88
           GDAN DA+  G+FYGKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 423 GDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474



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>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  169 bits (429), Expect = 2e-42
 Identities = 78/110 (70%), Positives = 95/110 (86%)
 Frame = -3

Query: 423 STGIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAX 244
           S G++N+GK+LVNS+DG   FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS AA 
Sbjct: 361 SVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAAL 420

Query: 243 GDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 94
           GDAN+DA+  G+F+GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 421 GDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470



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>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  164 bits (415), Expect = 8e-41
 Identities = 79/112 (70%), Positives = 93/112 (83%), Gaps = 2/112 (1%)
 Frame = -3

Query: 417 GIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAXGD 238
           G++ IGK+LVNS++G  +FEQPKMT++KLL YG MLVQEQ+NVKRVQLAD YMS+AA GD
Sbjct: 365 GVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGD 424

Query: 237 ANQDAMKTGSFYGKGAQQ--GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 88
           AN DA+K G+FYG  A Q  G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 425 ANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476



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>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  124 bits (312), Expect = 7e-29
 Identities = 58/74 (78%), Positives = 67/74 (90%)
 Frame = -3

Query: 417 GIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAXGD 238
           G+ENI KRLVNSR+G  TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AA G 
Sbjct: 352 GVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQ 411

Query: 237 ANQDAMKTGSFYGK 196
           AN DAMKTG+FYGK
Sbjct: 412 ANDDAMKTGAFYGK 425



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>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  124 bits (310), Expect = 1e-28
 Identities = 58/74 (78%), Positives = 68/74 (91%)
 Frame = -3

Query: 420 TGIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAXG 241
           TG+ENIGKRLVNSR+G   FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AA G
Sbjct: 354 TGVENIGKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALG 413

Query: 240 DANQDAMKTGSFYG 199
           DAN DAMKTGSFYG
Sbjct: 414 DANSDAMKTGSFYG 427



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>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  119 bits (298), Expect = 3e-27
 Identities = 55/73 (75%), Positives = 67/73 (91%)
 Frame = -3

Query: 417 GIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAXGD 238
           G+++IGK+LVNS++G  TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AA GD
Sbjct: 365 GVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGD 424

Query: 237 ANQDAMKTGSFYG 199
           AN DAM TG+FYG
Sbjct: 425 ANSDAMNTGTFYG 437



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>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  117 bits (292), Expect = 1e-26
 Identities = 53/73 (72%), Positives = 67/73 (91%)
 Frame = -3

Query: 420 TGIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAXG 241
           TG+ENI ++LVNS++G  TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AA G
Sbjct: 360 TGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALG 419

Query: 240 DANQDAMKTGSFY 202
           +AN+DAMKTGSF+
Sbjct: 420 EANEDAMKTGSFF 432



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>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  111 bits (278), Expect = 6e-25
 Identities = 51/71 (71%), Positives = 65/71 (91%)
 Frame = -3

Query: 417 GIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAXGD 238
           G++ IGK+LVNS++G  TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AA GD
Sbjct: 365 GVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGD 424

Query: 237 ANQDAMKTGSF 205
           ANQDA+K G+F
Sbjct: 425 ANQDAIKRGTF 435



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>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  110 bits (275), Expect = 1e-24
 Identities = 53/73 (72%), Positives = 62/73 (84%)
 Frame = -3

Query: 420 TGIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAXG 241
           TGIE IG +L+NS DG  TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AA G
Sbjct: 368 TGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALG 427

Query: 240 DANQDAMKTGSFY 202
           DAN DA+  GSF+
Sbjct: 428 DANADAINNGSFF 440



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>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  110 bits (275), Expect = 1e-24
 Identities = 54/72 (75%), Positives = 63/72 (87%)
 Frame = -3

Query: 420 TGIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAXG 241
           TGIE IG +L+NS DG  TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AA G
Sbjct: 368 TGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALG 427

Query: 240 DANQDAMKTGSF 205
           DAN DA+ TG+F
Sbjct: 428 DANADAINTGNF 439



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>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  110 bits (274), Expect = 2e-24
 Identities = 53/70 (75%), Positives = 63/70 (90%)
 Frame = -3

Query: 420 TGIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAXG 241
           TGIE IG++L+NSRDG  TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AA G
Sbjct: 363 TGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALG 422

Query: 240 DANQDAMKTG 211
           DAN DA+ TG
Sbjct: 423 DANADAINTG 432



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>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  104 bits (259), Expect = 1e-22
 Identities = 46/72 (63%), Positives = 66/72 (91%)
 Frame = -3

Query: 417 GIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAXGD 238
           G++  GK+LVNS++G  TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AA G+
Sbjct: 367 GVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGN 426

Query: 237 ANQDAMKTGSFY 202
           AN+DA+K+GSF+
Sbjct: 427 ANEDAIKSGSFF 438



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>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  103 bits (257), Expect = 2e-22
 Identities = 46/72 (63%), Positives = 65/72 (90%)
 Frame = -3

Query: 417 GIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAXGD 238
           G++++GK+LVNS++G  TF+QPKMT++KLL Y  MLVQEQ+NVKRVQLAD Y+++AA G+
Sbjct: 369 GVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGN 428

Query: 237 ANQDAMKTGSFY 202
           AN+DA+K+GSF+
Sbjct: 429 ANEDAIKSGSFF 440



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>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 33/48 (68%), Positives = 42/48 (87%)
 Frame = -3

Query: 417 GIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 274
           G+E IG+ LVNS++   TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L
Sbjct: 362 GVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409



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>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 29/57 (50%), Positives = 40/57 (70%)
 Frame = -3

Query: 420 TGIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQA 250
           TG++ IG++LVN+R   V   +  M +  L++YG  LV EQ+NVKRVQLAD Y+S A
Sbjct: 337 TGVDKIGQQLVNARQ-KVAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGA 392



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>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 20/52 (38%), Positives = 31/52 (59%)
 Frame = -3

Query: 417 GIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 262
           G EN+  R+VNS +G   F++P  T+  L+E  + +V EQ  ++  QL D Y
Sbjct: 238 GYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289



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>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 266 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 370
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453



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>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial|
           protein
          Length = 442

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 19/36 (52%), Positives = 21/36 (58%)
 Frame = -2

Query: 214 WFLLR*RSTARYFARAGRLHRPKCQELRPNGKERRR 107
           +FL R RS  R  AR     R K Q LRPNG E+RR
Sbjct: 139 FFLARDRSAKRERAR-----RRKGQTLRPNGNEQRR 169



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>RPB7_SOYBN (P46279) DNA-directed RNA polymerase II 19 kDa polypeptide (EC|
           2.7.7.6) (RNA polymerase II subunit 5)
          Length = 176

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -3

Query: 420 TGIENIGKRLVNSRDGXVTF 361
           TGIENIGK L+    G VTF
Sbjct: 49  TGIENIGKGLIRDGTGFVTF 68



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>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 105  CRRRSLPLGRSSWHFGRCNLP 167
            CRR   P GR   H GRCN P
Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134



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>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger|
           protein 53)
          Length = 1863

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 31/133 (23%), Positives = 53/133 (39%)
 Frame = -3

Query: 423 STGIENIGKRLVNSRDGXVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAX 244
           S G  N  KRL+ S     + ++  ++V+ L   G   V+     +R+Q   T +     
Sbjct: 127 SMGYRNRAKRLLQSEPENPSLQETSLSVQ-LSNLG--TVRTLRTKQRIQPQKTSVYIELG 183

Query: 243 GDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF*ACHF*YA 64
            D+++D +   ++   G Q+     P+G  D+ + +    A            AC F   
Sbjct: 184 SDSSEDTVNKATYCSVGDQELLQITPQGTRDEISLDSAKKA------------ACEFSET 231

Query: 63  DVLPT*VPHRMPS 25
           DV  T   H  PS
Sbjct: 232 DVTNT--EHHQPS 242



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>DNLI_VARV (P33798) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 552

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 309 VQEQDNVKRVQLADTYMSQAAXGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 142
           V E    + +++   Y+++ +  D+  D +  G++YGKGA+ G + V   GC D  +
Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442



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>DNLI_VACCV (P16272) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 552

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 309 VQEQDNVKRVQLADTYMSQAAXGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 142
           V E    + +++   Y+++ +  D+  D +  G++YGKGA+ G + V   GC D  +
Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442



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>DNLI_VACCC (P20492) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 552

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 309 VQEQDNVKRVQLADTYMSQAAXGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 142
           V E    + +++   Y+++ +  D+  D +  G++YGKGA+ G + V   GC D  +
Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442



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>DNLI_VACCA (O57250) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 552

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 309 VQEQDNVKRVQLADTYMSQAAXGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 142
           V E    + +++   Y+++ +  D+  D +  G++YGKGA+ G + V   GC D  +
Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442



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>TTUC5_AGRVI (O34295) Probable tartrate dehydrogenase/decarboxylase ttuC' (EC|
           1.1.1.93) (EC 4.1.1.73) (TDH) (D-malate dehydrogenase
           [decarboxylating]) (EC 1.1.1.83)
          Length = 358

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 238 C*PGCDEDWFLLR*RSTARYFARAGRLHRPKCQEL 134
           C PG D DW ++R  S   Y    GR HR   +E+
Sbjct: 120 CGPG-DLDWVIVRENSEGEYSGHGGRAHRGLPEEV 153



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>TTUC3_AGRVI (O34296) Probable tartrate dehydrogenase/decarboxylase ttuC' (EC|
           1.1.1.93) (EC 4.1.1.73) (TDH) (D-malate dehydrogenase
           [decarboxylating]) (EC 1.1.1.83)
          Length = 358

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 238 C*PGCDEDWFLLR*RSTARYFARAGRLHRPKCQEL 134
           C PG D DW ++R  S   Y    GR HR   +E+
Sbjct: 120 CGPG-DLDWVIVRENSEGEYSGHGGRAHRGLPEEV 153



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>TTUC1_AGRVI (Q44471) Probable tartrate dehydrogenase/decarboxylase ttuC (EC|
           1.1.1.93) (EC 4.1.1.73) (TDH) (D-malate dehydrogenase
           [decarboxylating]) (EC 1.1.1.83)
          Length = 364

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 238 C*PGCDEDWFLLR*RSTARYFARAGRLHRPKCQEL 134
           C PG D DW ++R  S   Y    GR HR   +E+
Sbjct: 120 CGPG-DLDWVIVRENSEGEYSGHGGRAHRGLPEEV 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,728,827
Number of Sequences: 219361
Number of extensions: 938237
Number of successful extensions: 2503
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 2466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2501
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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