ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4m19 |
|---|---|
| Clone Library Name | barley_pub |
>OCS1_MAIZE (P24068) Ocs element-binding factor 1 (OCSBF-1)| Length = 151 Score = 42.7 bits (99), Expect = 5e-04 Identities = 20/32 (62%), Positives = 25/32 (78%) Frame = -3 Query: 258 RRAKRMLSNRESVRRSRMHKKRHLDDLAALVS 163 RR KR LSNRES RRSR+ K++HLD+L V+ Sbjct: 26 RREKRRLSNRESARRSRLRKQQHLDELVQEVA 57
>CPRF2_PETCR (Q99090) Light-inducible protein CPRF-2| Length = 401 Score = 39.7 bits (91), Expect = 0.004 Identities = 18/34 (52%), Positives = 24/34 (70%) Frame = -3 Query: 264 EQRRAKRMLSNRESVRRSRMHKKRHLDDLAALVS 163 + +R +RMLSNRES RRSR K+ H+ +L VS Sbjct: 198 DAKRVRRMLSNRESARRSRRRKQAHMTELETQVS 231
>EMBP1_WHEAT (P25032) DNA-binding protein EMBP-1 (Histone promoter-binding| protein 1a(1)) (HBP-1a(1)) Length = 354 Score = 35.8 bits (81), Expect = 0.064 Identities = 17/34 (50%), Positives = 24/34 (70%) Frame = -3 Query: 264 EQRRAKRMLSNRESVRRSRMHKKRHLDDLAALVS 163 E +R +R SNRES RRSR+ K++ ++LA VS Sbjct: 250 ELKRERRKQSNRESARRSRLRKQQECEELAQKVS 283
>TAF1_TOBAC (Q99142) Transcriptional activator TAF-1 (Fragment)| Length = 265 Score = 34.7 bits (78), Expect = 0.14 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = -3 Query: 264 EQRRAKRMLSNRESVRRSRMHKKRHLDDLAALV 166 E +R KR SNRES RRSR+ K+ ++LA V Sbjct: 194 ELKREKRKQSNRESARRSRLRKQAEAEELAIRV 226
>HBP1A_WHEAT (P23922) Transcription factor HBP-1a (Histone-specific| transcription factor HBP1) Length = 349 Score = 33.9 bits (76), Expect = 0.24 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = -3 Query: 264 EQRRAKRMLSNRESVRRSRMHKKRHLDDL 178 E ++ KR LSNRES RRSR+ K+ ++L Sbjct: 252 ELKKQKRKLSNRESARRSRLRKQAECEEL 280
>RF2B_ORYSA (Q6S4P4) Transcription factor RF2b| Length = 329 Score = 33.5 bits (75), Expect = 0.32 Identities = 14/32 (43%), Positives = 24/32 (75%) Frame = -3 Query: 273 ALMEQRRAKRMLSNRESVRRSRMHKKRHLDDL 178 A ++ +RAKR+L+NR+S RS+ K R++ +L Sbjct: 129 AAIDPKRAKRILANRQSAARSKERKARYITEL 160
>GBF3_ARATH (P42776) G-box-binding factor 3 (AtbZIP55)| Length = 382 Score = 33.5 bits (75), Expect = 0.32 Identities = 16/33 (48%), Positives = 22/33 (66%) Frame = -3 Query: 264 EQRRAKRMLSNRESVRRSRMHKKRHLDDLAALV 166 E +R +R SNRES RRSR+ K+ ++LA V Sbjct: 259 ELKRERRKQSNRESARRSRLRKQAETEELARKV 291
>TGA5_ARATH (Q39163) Transcription factor TGA5 (Ocs element-binding factor 5)| (OBF5) (AtbZIP26) Length = 330 Score = 33.1 bits (74), Expect = 0.41 Identities = 12/36 (33%), Positives = 25/36 (69%) Frame = -3 Query: 285 EQMRALMEQRRAKRMLSNRESVRRSRMHKKRHLDDL 178 ++ ++ M+Q+ +R+ NRE+ R+SR+ KK ++ L Sbjct: 37 DRSKSKMDQKTLRRLAQNREAARKSRLRKKAYVQQL 72
>GBF2_ARATH (P42775) G-box-binding factor 2 (AtbZIP54)| Length = 360 Score = 33.1 bits (74), Expect = 0.41 Identities = 16/33 (48%), Positives = 21/33 (63%) Frame = -3 Query: 264 EQRRAKRMLSNRESVRRSRMHKKRHLDDLAALV 166 E +R KR SNRES RRSR+ K+ + L+ V Sbjct: 249 EVKREKRKQSNRESARRSRLRKQAETEQLSVKV 281
>TGA2_ARATH (P43273) Transcription factor TGA2 (HBP-1b homolog) (AHBP-1b)| (AtbZIP20) Length = 330 Score = 32.7 bits (73), Expect = 0.54 Identities = 12/36 (33%), Positives = 24/36 (66%) Frame = -3 Query: 285 EQMRALMEQRRAKRMLSNRESVRRSRMHKKRHLDDL 178 ++ + M+Q+ +R+ NRE+ R+SR+ KK ++ L Sbjct: 37 DRSKGKMDQKTLRRLAQNREAARKSRLRKKAYVQQL 72
>RF2A_ORYSA (Q69IL4) Transcription factor RF2a| Length = 380 Score = 32.7 bits (73), Expect = 0.54 Identities = 14/32 (43%), Positives = 24/32 (75%) Frame = -3 Query: 273 ALMEQRRAKRMLSNRESVRRSRMHKKRHLDDL 178 AL++ +RAKR+ +NR+S RS+ K R++ +L Sbjct: 178 ALVDPKRAKRIWANRQSAARSKERKMRYIAEL 209
>CPRF1_PETCR (Q99089) Common plant regulatory factor CPRF-1| Length = 411 Score = 32.3 bits (72), Expect = 0.71 Identities = 15/31 (48%), Positives = 21/31 (67%) Frame = -3 Query: 258 RRAKRMLSNRESVRRSRMHKKRHLDDLAALV 166 +R +R SNRES RRSR+ K+ ++LA V Sbjct: 271 KRERRKQSNRESARRSRLRKQAEAEELAIKV 301
>POF21_ARATH (Q04088) Probable transcription factor PosF21 (AtbZIP59)| Length = 398 Score = 32.3 bits (72), Expect = 0.71 Identities = 14/32 (43%), Positives = 24/32 (75%) Frame = -3 Query: 273 ALMEQRRAKRMLSNRESVRRSRMHKKRHLDDL 178 AL++ +RAKR+ +NR+S RS+ K R++ +L Sbjct: 198 ALIDPKRAKRIWANRQSAARSKERKTRYIFEL 229
>CPRF3_PETCR (Q99091) Light-inducible protein CPRF-3| Length = 296 Score = 32.3 bits (72), Expect = 0.71 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = -3 Query: 264 EQRRAKRMLSNRESVRRSRMHKKRHLDDL 178 E +R +R SNRES RRSR+ K+ D+L Sbjct: 196 ELKRQRRKQSNRESARRSRLRKQAKSDEL 224
>GBF1_ARATH (P42774) G-box-binding factor 1 (AtbZIP41)| Length = 315 Score = 32.0 bits (71), Expect = 0.92 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = -3 Query: 264 EQRRAKRMLSNRESVRRSRMHKKRHLDDL 178 E +R KR SNRES RRSR+ K+ + L Sbjct: 222 ELKRQKRKQSNRESARRSRLRKQAECEQL 250
>HAC1_YEAST (P41546) Transcriptional activatory protein HAC1| Length = 230 Score = 31.2 bits (69), Expect = 1.6 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -3 Query: 264 EQRRAKRMLSNRESVRRSRMHKKRHLDDLAALVSL 160 EQRR +R+L NR + +SR K+ HL L SL Sbjct: 39 EQRRIERILRNRRAAHQSREKKRLHLQYLERKCSL 73
>OP2_MAIZE (P12959) Regulatory protein opaque-2| Length = 453 Score = 31.2 bits (69), Expect = 1.6 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -3 Query: 261 QRRAKRMLSNRESVRRSRMHKKRHLDDL 178 + R ++ SNRES RRSR K HL +L Sbjct: 226 EERVRKKESNRESARRSRYRKAAHLKEL 253
>ULE1B_HUMAN (Q9UBT2) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating| enzyme subunit 2) (Anthracycline-associated resistance ARX) Length = 640 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%) Frame = -3 Query: 264 EQRRAKRMLSNRE--SVRRSRMHKKRHLDDLAAL 169 E+R KR L +E S +RSR+ +K LDD+ AL Sbjct: 606 EERSRKRKLDEKENLSAKRSRIEQKEELDDVIAL 639
>DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7)| Length = 1121 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +2 Query: 83 HTMRMITKDDSMGKIDKYDP*TVKIHKLTSAARSSRWRFLCIRE 214 HT R I K + K+ +YDP T+ +LT R W+ L + E Sbjct: 1010 HTRRTIFKTTLLNKVSRYDPFTIHNEQLTRVLRP--WKDLTLYE 1051
>ATF6B_MOUSE (O35451) Cyclic AMP-dependent transcription factor ATF-6 beta| (Activating transcription factor 6 beta) (ATF6-beta) (cAMP-responsive element-binding protein-like 1) (cAMP response element-binding protein-related protein) (Creb-rp) Length = 699 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -3 Query: 258 RRAKRMLSNRESVRRSRMHKKRHLDDLAA 172 +R +RM+ NRES +SR KK +L L A Sbjct: 324 KRQQRMIKNRESACQSRRKKKEYLQGLEA 352
>ATF6B_HUMAN (Q99941) Cyclic AMP-dependent transcription factor ATF-6 beta| (Activating transcription factor 6 beta) (ATF6-beta) (cAMP-responsive element-binding protein-like 1) (cAMP response element-binding protein-related protein) (Creb-rp) (Protein G13 Length = 703 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -3 Query: 258 RRAKRMLSNRESVRRSRMHKKRHLDDLAA 172 +R +RM+ NRES +SR KK +L L A Sbjct: 327 KRQQRMIKNRESACQSRRKKKEYLQGLEA 355
>TGA3_ARATH (Q39234) Transcription factor TGA3 (AtbZIP22)| Length = 384 Score = 30.0 bits (66), Expect = 3.5 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 267 MEQRRAKRMLSNRESVRRSRMHKKRHLDDL 178 + + +R+ NRE+ R+SR+ KK H+ L Sbjct: 95 INDKMKRRLAQNREAARKSRLRKKAHVQQL 124
>GBF4_ARATH (P42777) G-box-binding factor 4 (AtbZIP40)| Length = 270 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -3 Query: 258 RRAKRMLSNRESVRRSRMHKKRHLDDLAALVS 163 +R KRM+ NRES RSR K+ + +L L + Sbjct: 189 QRQKRMIKNRESAARSRERKQAYQVELETLAA 220
>LEC2_MEGRO (P17346) Lectin BRA-2| Length = 173 Score = 28.9 bits (63), Expect = 7.8 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 13/89 (14%) Frame = -1 Query: 236 PIGSRC---AARGCTRSAISTTSPRSSVCEFLPSTGHICRFCP---------CYH-PLLS 96 P+ C A T++ T+ S + E + +T H C CP C+H PL Sbjct: 9 PVPDTCGHVAEERVTQAFAELTTKLSELQENVTNTFHGCNHCPNGWVTSENKCFHVPLEK 68 Query: 95 SSWYEKCGVM*RCGAMLPLITIHSLSPSI 9 +SW GV R + L +I + ++ Sbjct: 69 ASWMVAHGVCARLDSRARLASIDAADQAV 97
>ATF6A_HUMAN (P18850) Cyclic AMP-dependent transcription factor ATF-6 alpha| (Activating transcription factor 6 alpha) (ATF6-alpha) Length = 670 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -3 Query: 258 RRAKRMLSNRESVRRSRMHKKRHLDDLAA 172 RR +RM+ NRES +SR KK ++ L A Sbjct: 308 RRQQRMIKNRESACQSRKKKKEYMLGLEA 336 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,727,863 Number of Sequences: 219361 Number of extensions: 984055 Number of successful extensions: 3284 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3195 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3280 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
