ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4m13 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 315 bits (807), Expect = 6e-86 Identities = 154/154 (100%), Positives = 154/154 (100%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP Sbjct: 311 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 370 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGA 214 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGA Sbjct: 371 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGA 430 Query: 213 QQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 112 QQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 431 QQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 243 bits (619), Expect = 4e-64 Identities = 115/154 (74%), Positives = 134/154 (87%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 +TD + DE +V +VD FPGQSIDFFGALRARVYDDEVRK+V S G+E IGKRLVNSR+GP Sbjct: 321 RTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGP 380 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGA 214 FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+ G+FYGKGA Sbjct: 381 PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGA 440 Query: 213 QQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 112 QQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 441 QQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 242 bits (617), Expect = 7e-64 Identities = 115/156 (73%), Positives = 134/156 (85%), Gaps = 2/156 (1%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 +TDNV+D+ +VK+VDTFPGQSIDFFGALRARVY DEVRKWV G++ IGK+LVNS++GP Sbjct: 321 RTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGP 380 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGA 214 +FEQPKMT++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG A Sbjct: 381 PSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQA 440 Query: 213 QQ--GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 112 Q G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 441 AQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 240 bits (613), Expect = 2e-63 Identities = 113/152 (74%), Positives = 132/152 (86%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 +TD V E VVK+VD FPGQSIDFFGALRARVY DEVRKWV S G++N+GK+LVNS+DGP Sbjct: 319 KTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGP 378 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGA 214 FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+ G+F+GK A Sbjct: 379 PVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAA 438 Query: 213 QQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 118 QQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 439 QQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 207 bits (526), Expect = 2e-53 Identities = 97/118 (82%), Positives = 110/118 (93%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 +TDNV DE+VV++VDTFPGQSIDFFGALRARVYDDEVRKWVG G+ENI KRLVNSR+GP Sbjct: 308 RTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGP 367 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGK 220 TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYGK Sbjct: 368 PTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 204 bits (518), Expect = 2e-52 Identities = 96/117 (82%), Positives = 109/117 (93%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 +TDNV DE +VKIVD+FPGQSIDFFGALRARVYDDEVRKWV TG+ENIGKRLVNSR+GP Sbjct: 311 RTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGP 370 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 223 FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 371 PEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 195 bits (496), Expect = 7e-50 Identities = 90/117 (76%), Positives = 108/117 (92%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 ++DNV+ E +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ G+++IGK+LVNS++GP Sbjct: 321 RSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGP 380 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 223 TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG Sbjct: 381 PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 191 bits (486), Expect = 1e-48 Identities = 88/116 (75%), Positives = 107/116 (92%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 +TD V +E VV++VDTFPGQSIDFFGALRARVYDDEVR+WV TG+ENI ++LVNS++GP Sbjct: 317 RTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGP 376 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 226 TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+ Sbjct: 377 PTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 191 bits (484), Expect = 2e-48 Identities = 92/115 (80%), Positives = 105/115 (91%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 +TDNV +E+V+KIVDTFPGQSIDFFGALRARVYDDEVRKWV TGIE IG +L+NS DGP Sbjct: 325 RTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGP 384 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 229 TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F Sbjct: 385 PTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 189 bits (480), Expect = 5e-48 Identities = 91/113 (80%), Positives = 105/113 (92%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 +TDNV +E+VVKIVD+FPGQSIDFFGALRARVYDDEVRKWV TGIE IG++L+NSRDGP Sbjct: 320 RTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGP 379 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 235 TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 380 PTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 189 bits (479), Expect = 7e-48 Identities = 87/115 (75%), Positives = 105/115 (91%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 +TDNV +E +VK+VD FPGQSIDFFGALRARVYDDEVRKWV G++ IGK+LVNS++GP Sbjct: 321 RTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGP 380 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 229 TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F Sbjct: 381 PTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 187 bits (475), Expect = 2e-47 Identities = 91/116 (78%), Positives = 101/116 (87%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 +TDNV E VVKIVD FPGQSIDFFGALRARVYDDEVRKWV TGIE IG +L+NS DGP Sbjct: 325 RTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGP 384 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 226 TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+ GSF+ Sbjct: 385 PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 179 bits (454), Expect = 5e-45 Identities = 80/116 (68%), Positives = 105/116 (90%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 +TD V +E + K+VDTFPGQSIDFFGALRARVYDDEVRKW+ G++ GK+LVNS++GP Sbjct: 323 RTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGP 382 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 226 TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 383 PTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 172 bits (435), Expect = 9e-43 Identities = 77/116 (66%), Positives = 103/116 (88%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 +TD V ++ +V++VD PGQSIDFFGALRARVYDDEVRKW+ G++++GK+LVNS++GP Sbjct: 325 RTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGP 384 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 226 TF+QPKMT++KLL Y MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 385 PTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 143 bits (361), Expect = 3e-34 Identities = 67/92 (72%), Positives = 79/92 (85%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 +TD V E +VK+VDTFPGQSIDFFGALRARVYDDEVRKW G+E IG+ LVNS++ P Sbjct: 318 RTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESP 377 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 298 TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L Sbjct: 378 PTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 119 bits (297), Expect = 9e-27 Identities = 60/102 (58%), Positives = 74/102 (72%) Frame = -2 Query: 573 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 394 Q DNV V +VDTFPGQSIDFFGALRARVYDD VR+W+ TG++ IG++LVN+R Sbjct: 294 QEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ-K 352 Query: 393 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 268 V + M + L++YG LV EQ+NVKRVQLAD Y+S A L Sbjct: 353 VAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 95.5 bits (236), Expect = 1e-19 Identities = 42/94 (44%), Positives = 63/94 (67%) Frame = -2 Query: 567 DNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVT 388 D +S V K+VD+FP QSIDFF ALR+R+YD+++R ++ G EN+ R+VNS +GP Sbjct: 196 DGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPA 255 Query: 387 FEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 286 F++P T+ L+E + +V EQ ++ QL D Y Sbjct: 256 FKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 414 Score = 87.8 bits (216), Expect = 2e-17 Identities = 40/94 (42%), Positives = 61/94 (64%) Frame = -2 Query: 567 DNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVT 388 D +S + ++VDTFP QSIDFF ALR+R+YD ++R ++ G E I R+VNS + P Sbjct: 196 DGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPE 255 Query: 387 FEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 286 F++P ++ L+E G++++ EQ V QL D Y Sbjct: 256 FKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast (RuBisCO activase) (RA) (Fragments) Length = 32 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/60 (45%), Positives = 30/60 (50%) Frame = -2 Query: 537 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 358 +VDTFPGQSIDFFGAL R+GP TFEQP MT+EK Sbjct: 1 LVDTFPGQSIDFFGAL----------------------------REGPPTFEQPAMTIEK 32
>ZDH23_HUMAN (Q8IYP9) Probable palmitoyltransferase ZDHHC23 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 23) (DHHC-23) Length = 409 Score = 30.8 bits (68), Expect = 3.1 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Frame = +2 Query: 185 PSGTGKVPCCAPLP*KEPVFIASWLASPRAAWLM*VSASCT-RLTLSCSWTSMCPYSSSF 361 P G+ K+P +P KE L P AW + C R+ C W + C S+ Sbjct: 242 PKGSSKMPAGSPTKAKEDWCAKCQLVRPARAWRCRICGICVRRMDHHCVWINSCVGESNH 301 Query: 362 STVI 373 I Sbjct: 302 QAFI 305
>LEPA_HELPY (O25122) GTP-binding protein lepA| Length = 602 Score = 30.4 bits (67), Expect = 4.1 Identities = 20/79 (25%), Positives = 37/79 (46%) Frame = -2 Query: 540 KIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVE 361 KI+ T P S DF L+A +YD ++G+ LV DG + EQ + + Sbjct: 180 KIITTIPAPSGDFNAPLKALIYDSWFDNYLGALA-------LVRIMDGSINTEQEILVMG 232 Query: 360 KLLEYGHMLVQEQDNVKRV 304 ++G + + + +K++ Sbjct: 233 TGKKHGVLGLYYPNPLKKI 251
>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor| Length = 1346 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 290 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 394 + +SC+R TL T CP SS +TVI+ C ++ Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453
>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 366 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Frame = -2 Query: 579 SSQTDNVSD-ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSR 403 SS+ +D + +V V+T S D A+ ARV D+++ ++GS +E ++ V+ Sbjct: 214 SSRIGQFTDYDRLVISVETDGSISPDEAVAVSARVLQDQLQSFIGSEEVEGESRKKVDKE 273 Query: 402 DGPVTFE 382 +G + ++ Sbjct: 274 EGALPYD 280
>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial| protein Length = 442 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/36 (52%), Positives = 21/36 (58%) Frame = -1 Query: 238 WFLLR*RSTARYFARAGRLHRPKCQELRPNGKERRR 131 +FL R RS R AR R K Q LRPNG E+RR Sbjct: 139 FFLARDRSAKRERAR-----RRKGQTLRPNGNEQRR 169
>S20AB_XENLA (Q6PB26) Sodium-dependent phosphate transporter 1-B (Solute carrier| family 20 member 1-B) Length = 685 Score = 29.6 bits (65), Expect = 6.9 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = +1 Query: 115 GVKAAAVVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLHRILVSITQSCLAHV 288 G++ ++AP W++VLG ++ F G + + SF GT++ +V++ Q+C+ Sbjct: 15 GIQDVHIMAPYLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQACIL-- 69 Query: 289 GVSKLHTLDIVLL 327 S T+ VLL Sbjct: 70 -ASIFETVGSVLL 81
>LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 precursor| Length = 521 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%) Frame = -2 Query: 456 WVGSTGIENIGKRLVNSRDGPVT-FEQPKMTVEKLLE 349 W+GS I+ G+RL++SRD +T E P++ ++ LLE Sbjct: 222 WLGSW-IKEGGRRLLSSRDKKITCAEPPRLALQSLLE 257
>DNLI_VARV (P33798) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -2 Query: 333 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 166 V E + +++ Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCV (P16272) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -2 Query: 333 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 166 V E + +++ Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCC (P20492) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -2 Query: 333 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 166 V E + +++ Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCA (O57250) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -2 Query: 333 VQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 166 V E + +++ Y+++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 387 VYEPGKRRWLKIKRDYLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>RPOB_DESDG (Q30X05) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1375 Score = 29.3 bits (64), Expect = 9.1 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%) Frame = -2 Query: 582 VSSQTDNVSDESVVKIV----DTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGK-R 418 +SS+ DN+ DE+ V+ V D ++ F GA ++++ W+ G+ N GK Sbjct: 1171 ISSEVDNMDDETFVRSVRRLRDGIVTKTPVFDGAT-----EEQIWSWMEQAGLANDGKTE 1225 Query: 417 LVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQ 322 L + R G V F T + H LV E+ Sbjct: 1226 LYDGRTG-VRFHNRVTTGVMYILKLHHLVDEK 1256
>GIDA_WOLTR (Q5GS25) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 677 Score = 29.3 bits (64), Expect = 9.1 Identities = 17/62 (27%), Positives = 29/62 (46%) Frame = -2 Query: 591 LQRVSSQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLV 412 L V+ DN +D++V+++VDT ++ + D V +W TG N K Sbjct: 528 LTNVTRWNDNKADQTVIQVVDT----------RIQKKNADSSVTRWNDKTGYWNDSKTTS 577 Query: 411 NS 406 N+ Sbjct: 578 NT 579
>TAL_STRP8 (P66961) Probable transaldolase (EC 2.2.1.2)| Length = 214 Score = 29.3 bits (64), Expect = 9.1 Identities = 20/86 (23%), Positives = 39/86 (45%) Frame = -2 Query: 435 ENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDAN 256 E + K + + DGP++ E +T + ++E + + DNV V++ T A + Sbjct: 40 ETVIKEICDIVDGPISAEVTGLTADAMVEEARSIAKWHDNVV-VKIPMTTEGLKATNILS 98 Query: 255 QDAMKTGSFYGKGAQQGTLPVPEGCT 178 ++ +KT QG + + G T Sbjct: 99 KEGIKTNVTLIFTVSQGLMAMKAGAT 124
>TAL_STRP6 (Q5XAK4) Probable transaldolase (EC 2.2.1.2)| Length = 214 Score = 29.3 bits (64), Expect = 9.1 Identities = 20/86 (23%), Positives = 39/86 (45%) Frame = -2 Query: 435 ENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDAN 256 E + K + + DGP++ E +T + ++E + + DNV V++ T A + Sbjct: 40 ETVIKEICDIVDGPISAEVTGLTADAMVEEARSIAKWHDNVV-VKIPMTTEGLKATNILS 98 Query: 255 QDAMKTGSFYGKGAQQGTLPVPEGCT 178 ++ +KT QG + + G T Sbjct: 99 KEGIKTNVTLIFTVSQGLMAMKAGAT 124
>TAL_STRP3 (P66960) Probable transaldolase (EC 2.2.1.2)| Length = 214 Score = 29.3 bits (64), Expect = 9.1 Identities = 20/86 (23%), Positives = 39/86 (45%) Frame = -2 Query: 435 ENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDAN 256 E + K + + DGP++ E +T + ++E + + DNV V++ T A + Sbjct: 40 ETVIKEICDIVDGPISAEVTGLTADAMVEEARSIAKWHDNVV-VKIPMTTEGLKATNILS 98 Query: 255 QDAMKTGSFYGKGAQQGTLPVPEGCT 178 ++ +KT QG + + G T Sbjct: 99 KEGIKTNVTLIFTVSQGLMAMKAGAT 124
>TAL_STRP1 (P66959) Probable transaldolase (EC 2.2.1.2)| Length = 214 Score = 29.3 bits (64), Expect = 9.1 Identities = 20/86 (23%), Positives = 39/86 (45%) Frame = -2 Query: 435 ENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDAN 256 E + K + + DGP++ E +T + ++E + + DNV V++ T A + Sbjct: 40 ETVIKEICDIVDGPISAEVTGLTADAMVEEARSIAKWHDNVV-VKIPMTTEGLKATNILS 98 Query: 255 QDAMKTGSFYGKGAQQGTLPVPEGCT 178 ++ +KT QG + + G T Sbjct: 99 KEGIKTNVTLIFTVSQGLMAMKAGAT 124
>RL3_CLOPE (Q8XHS3) 50S ribosomal protein L3| Length = 209 Score = 29.3 bits (64), Expect = 9.1 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Frame = -2 Query: 564 NVSDESVVKIVDTFP-GQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVT 388 NV DE +K VDTF G +D G + + + +++W S G + G + + Sbjct: 92 NVGDE--IK-VDTFEIGDKVDVSGVSKGKGFQGTIKRWNASRGPMSHGSKFHRAPGSMGA 148 Query: 387 FEQPKMTVEKLLEYGHM 337 P T + GHM Sbjct: 149 ASDPSRTFKNKRMPGHM 165 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,379,185 Number of Sequences: 219361 Number of extensions: 1607402 Number of successful extensions: 4816 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 4691 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4813 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
