ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4m03 |
|---|---|
| Clone Library Name | barley_pub |
>OPSD_CATBO (Q17296) Rhodopsin| Length = 378 Score = 30.8 bits (68), Expect = 0.82 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%) Frame = -3 Query: 328 WVAGPHICKIFGQTG---GCGNPFT 263 WV GP +C+++G TG GCG+ +T Sbjct: 120 WVLGPLVCELYGLTGSLFGCGSIWT 144
>DUSC_VIBPA (Q87N01) tRNA-dihydrouridine synthase C (EC 1.-.-.-)| Length = 322 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/48 (31%), Positives = 28/48 (58%) Frame = +2 Query: 197 WN*LTDLLAGCISFFFVAELHRGEGVAAASRLPKYFAYMRPSYPPWNK 340 W+ + DLL ++ E+ +G+ +R+ ++FAY+R SYP N+ Sbjct: 246 WSDVVDLLI----YYSKFEMKGDKGLYYPNRVKQWFAYLRQSYPEANE 289
>GAST_HORSE (P55885) Gastrin precursor [Contains: Big gastrin (Gastrin 34)| (G34); Gastrin] Length = 107 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 8/45 (17%) Frame = +3 Query: 222 LAVFLSSSWPNCTEVKGLPQPPVC--------PNILHI*GPATHH 332 LA F +SW C++++ P P P+ L GPA+HH Sbjct: 15 LAAFSEASWKPCSQLQDAPSGPGANKGLYPHWPDQLDRLGPASHH 59
>DHA_CRAPL (P22238) Desiccation-related protein clone PCC27-04| Length = 117 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -3 Query: 292 QTGGCGNPFTSVQFGHEEERNTASQQVSESVP 197 QTG CG T+ GHEE++ +++ E +P Sbjct: 84 QTGECGTTTTTAAGGHEEKKG-VMEKIKEKLP 114
>OPSO_LIMPO (P35361) Ocellar opsin| Length = 376 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = -3 Query: 340 FVPWWVAGPHICKIFGQTG---GCGNPFTSV 257 F W+ GP +C+++G G GC + ++ V Sbjct: 109 FAETWILGPFMCEVYGMAGSLFGCASIWSMV 139
>OPSL_LIMPO (P35360) Lateral eye opsin| Length = 376 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = -3 Query: 340 FVPWWVAGPHICKIFGQTG---GCGNPFTSV 257 F W+ GP +C+++G G GC + ++ V Sbjct: 109 FAETWILGPFMCEVYGMAGSLFGCASIWSMV 139
>DUSC_VIBCH (Q9KT00) tRNA-dihydrouridine synthase C (EC 1.-.-.-)| Length = 323 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = +2 Query: 197 WN*LTDLLAGCISFFFVAELHRGEGVAAASRLPKYFAYMRPSYPPWNK 340 W+ + DLL F E+ +G +R+ ++FAY+R +YP N+ Sbjct: 246 WHEVVDLLLRYTQF----EVRGDKGKYYPNRIKQWFAYLRHAYPQANE 289
>POPD3_CHICK (Q9DG25) Popeye domain-containing protein 3 (Popeye protein 3)| Length = 305 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/87 (25%), Positives = 35/87 (40%) Frame = +2 Query: 71 RXIAYRRRQLSVSAHLHTFLSSPFKSRSTNKELLAGXXLKQHWN*LTDLLAGCISFFFVA 250 R +A+RR++L + H F+S F +L G + + L D Sbjct: 210 RYVAWRRKKLYLLFAKHRFISRLFS-------ILIGSDIAEKLYALND------------ 250 Query: 251 ELHRGEGVAAASRLPKYFAYMRPSYPP 331 +H G+G RLP ++ P PP Sbjct: 251 RVHVGKGFRYDIRLPNFYHTSLPETPP 277
>OPS6_DROME (O01668) Opsin Rh6 (Rhodopsin Rh6, long-wavelength)| Length = 369 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%) Frame = -3 Query: 343 GFVPWWVAGPHICKIFGQTG---GC 278 GF W+ GP +C+++G G GC Sbjct: 108 GFYGTWIMGPFLCELYGMFGSLFGC 132
>SYC1_MYCTU (P0A634) Cysteinyl-tRNA synthetase 1 (EC 6.1.1.16) (Cysteine--tRNA| ligase 1) (CysRS 1) Length = 469 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 7/46 (15%) Frame = +2 Query: 224 GCISFFFVAELHRGEGVAAASRLPKYFAYMR------PSYP-PWNK 340 G +S + ++H+GEGVAA R + F + PS+P PW + Sbjct: 157 GQLSGHKIDDVHQGEGVAAGKRDQRDFTLWKGEKPGEPSWPTPWGR 202
>SYC1_MYCBO (P0A635) Cysteinyl-tRNA synthetase 1 (EC 6.1.1.16) (Cysteine--tRNA| ligase 1) (CysRS 1) Length = 469 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 7/46 (15%) Frame = +2 Query: 224 GCISFFFVAELHRGEGVAAASRLPKYFAYMR------PSYP-PWNK 340 G +S + ++H+GEGVAA R + F + PS+P PW + Sbjct: 157 GQLSGHKIDDVHQGEGVAAGKRDQRDFTLWKGEKPGEPSWPTPWGR 202
>OPSD_SPHSP (P35362) Rhodopsin (Opsin)| Length = 376 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%) Frame = -3 Query: 328 WVAGPHICKIFGQTG---GCGNPFTSV 257 WV GP +C+++ G GCG+ +T V Sbjct: 118 WVLGPFMCELYALLGSLFGCGSIWTMV 144
>DPOL_VARV (P33793) DNA polymerase (EC 2.7.7.7)| Length = 1005 Score = 27.3 bits (59), Expect = 9.1 Identities = 22/81 (27%), Positives = 33/81 (40%) Frame = +2 Query: 98 LSVSAHLHTFLSSPFKSRSTNKELLAGXXLKQHWN*LTDLLAGCISFFFVAELHRGEGVA 277 + + L T L S F SRS+ EL + + L A + + V E ++ Sbjct: 865 IDILRSLETDLRSEFDSRSSPLELF----MLSRMHHLNYKSADNPNMYLVTEYNKNNPET 920 Query: 278 AASRLPKYFAYMRPSYPPWNK 340 YFAY+ P+ PW K Sbjct: 921 IELGERYYFAYICPANVPWTK 941
>RADA_CHLTR (O84300) DNA repair protein radA homolog (DNA repair protein sms| homolog) Length = 454 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/58 (31%), Positives = 24/58 (41%) Frame = -3 Query: 367 TCNKC*VIGFVPWWVAGPHICKIFGQTGGCGNPFTSVQFGHEEERNTASQQVSESVPV 194 TC +C G H K GQ GC T V+ + NT+S S S+P+ Sbjct: 10 TCTEC-----------GTHSPKWLGQCSGCLQWNTLVEERTAPKLNTSSYSSSSSIPI 56 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,667,188 Number of Sequences: 219361 Number of extensions: 932356 Number of successful extensions: 2551 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2497 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2550 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
