ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4l24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATC1_DROPS (Q292Q0) Calcium-transporting ATPase sarcoplasmic/end... 29 9.1
2SAG1_YEAST (P20840) Alpha-agglutinin precursor (AG-alpha-1) 29 9.1

>ATC1_DROPS (Q292Q0) Calcium-transporting ATPase sarcoplasmic/endoplasmic|
            reticulum type (EC 3.6.3.8) (Calcium pump)
          Length = 1020

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 226  CAKFQEPKSMVSSLSVLTALGNLHAL--FEETTSTSRMPVRC 107
            C  F +PK+M  +LSVL  +  L+A+    E  S   MP  C
Sbjct: 888  CKIFSDPKAMTMALSVLVTIEMLNAMNSLSENQSLISMPPWC 929



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>SAG1_YEAST (P20840) Alpha-agglutinin precursor (AG-alpha-1)|
          Length = 650

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 129 VEVVSSN--NAWRFPRAVNTLNEDTIDFGS 212
           V+V SSN  N W FP++ N  N D   FGS
Sbjct: 230 VQVYSSNDFNDWWFPQSYNDTNADVTCFGS 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,529,602
Number of Sequences: 219361
Number of extensions: 1767659
Number of successful extensions: 4527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4527
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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