>CHLP_SYNY3 (Q55087) Geranylgeranyl hydrogenase|
          Length = 407

 Score =  116 bits (291), Expect = 4e-26
 Identities = 55/93 (59%), Positives = 73/93 (78%)
 Frame = -3

Query: 545 NGTRLVDESDLRKYLAEFDRLYWPTYKVLDILQKVFYRSNAAREAFVEMCADDYVQRMTF 366
           NG R+  E+DL++Y+ ++D+ Y  TY VLDILQ+VFYR++A REAFVEMC+D  VQ++TF
Sbjct: 313 NGQRVPTEADLKQYIKQWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTF 372

Query: 365 DSYLYKRVVPGNPIEDIKLAVNTIGSLVRAIAL 267
           DSYLYK VVP NP+  +K+   TIGSL+R  AL
Sbjct: 373 DSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405

>BCHP_RHOCA (P26172) Geranylgeranyl hydrogenase|
          Length = 391

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 28/79 (35%), Positives = 48/79 (60%)
 Frame = -3

Query: 521 SDLRKYLAEFDRLYWPTYKVLDILQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRV 342
           +DL+   A F + +   +KVL ++Q  +Y S+  RE FV +C D  VQRMTF+SY+ K++
Sbjct: 304 ADLKLARAGFMKEHGTVFKVLRMMQDKYYHSDDRRERFVSLCHDVDVQRMTFESYMNKKM 363

Query: 341 VPGNPIEDIKLAVNTIGSL 285
               P++++K+    +  L
Sbjct: 364 TKFQPLKNLKIGFKNLAHL 382

>OL56_STRAT (Q07017) Oleandomycin polyketide synthase, modules 5 and 6|
          Length = 3519

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 40/110 (36%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
 Frame = +3

Query: 246  ELPHLPAQR-----DG-PDEAADGVDSELDVL--DGVARHDALV---EVAVEGHPLHVVV 392
            +LP  P QR     DG P  +A+GVD E D +  D V R D++    E+ ++   LH V+
Sbjct: 2554 DLPTYPFQRQRFWLDGSPASSANGVDGEADAMIWDAVEREDSVAVAEELGIDAEALHTVL 2613

Query: 393  GAHLHERLPRRVGAVEHL-LQDVQHLVRWPVEPVELRQVLAQVALVHQPR 539
             A    R  R    VEH  LQD ++ V W   P  L +VL    L   PR
Sbjct: 2614 PALSSWRRRR----VEHRRLQDWRYRVEWKPFPAALDEVLGGGWLFVVPR 2659

>HIS5_NEIMB (Q9K0H2) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 212

 Score = 32.3 bits (72), Expect = 0.89
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 132 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRXQGELPHLPA--QRDGPDEA 290
           LKSVR+A  L   +     S +P R+S    V    QG +P   A  +RDG DEA
Sbjct: 17  LKSVRTAGQLAGKNTEIFLSGDPDRVSRADKVIFPGQGAMPDCMAALKRDGLDEA 71

>BCL2_BOVIN (O02718) Apoptosis regulator Bcl-2|
          Length = 229

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 431 SGRTPSAGCPAPCTLASRAGRTPPGTCAGRSRPPAAS 541
           +G  P    PAP  L+S+ GRTP  +      PPAA+
Sbjct: 35  AGAAPPGAAPAPGILSSQPGRTPAPSRTSPPPPPAAA 71

>FILA_MOUSE (P11088) Filaggrin (Fragment)|
          Length = 336

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = -2

Query: 333 QPHRGHQARCQH---HRQPRQGHRAAPGDGEAH 244
           +  RGHQ + QH   H QP  GHR     G  H
Sbjct: 173 EQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGH 205

>RN139_HUMAN (Q8WU17) RING finger protein 139 (Translocation in renal carcinoma|
           on chromosome 8)
          Length = 664

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
 Frame = +3

Query: 84  TTSRSTPLPLYSHLLCLKSVRSAADLC-------YTDRSAAASSNPSRMSGTFPVCRRXQ 242
           T++R TP   Y H LCL+      D C       Y +     +SN S  +G  P     +
Sbjct: 556 TSARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDDIKDNSNVSNNNGFIPPNETPE 615

Query: 243 GELPHLPAQRDGPDEAADGVDSELDV---LDGVARH 341
             +    A+ D      D  D + DV    +GV +H
Sbjct: 616 EAVREAAAESDRELNEDDSTDCDDDVQRERNGVIQH 651

>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor|
          Length = 839

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = -2

Query: 522 ERPAQVPGGVRPALLANVQGAGHPAEGVLPLQXXXXXXXXXXXXXXXXXXXXRQLPLQAR 343
           ++PAQV  G +PA     Q  G   +G  P Q                     Q P Q +
Sbjct: 574 QQPAQVQQGQQPAQGQQGQQLGQGQQGQQPGQ-----------------GQQGQQPAQGQ 616

Query: 342 RAGQPHRGHQARCQHHRQPRQGHRA-APGDGE 250
           +  QP +G     QH +QP QG +   PG G+
Sbjct: 617 QGQQPGQG-----QHGQQPGQGQQGQQPGQGQ 643

>CK5P2_MOUSE (Q8K389) CDK5 regulatory subunit-associated protein 2 (CDK5|
            activator-binding protein C48)
          Length = 1822

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -2

Query: 321  GHQARCQHHRQPR--QGHRAAPGDGEAHLVIADTPETSLTSCLGCSKLRRIDRYSRDPRP 148
            G  AR + H Q    +G R   G+   H ++ ++PE S +  L   ++      SRDP+P
Sbjct: 1324 GKSARVEPHPQNELLKGLRTVEGNLPYHHLLPESPEPSASHALSDDEMSEKSFLSRDPKP 1383

>RAD50_HALVO (P62133) DNA double-strand break repair rad50 ATPase|
          Length = 893

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
 Frame = +3

Query: 249 LPHLPAQRDGPDEAADGVDSELDVLDGV--------ARHDALVEVAVEGHPLHVVVGAHL 404
           LP L  +RD       GV++EL+ LD +         R DAL  V  E   L    G   
Sbjct: 670 LPELREKRDDLQSRVGGVEAELEQLDDLRERRDHLAERVDALESVHDEVSTLESTYGDLR 729

Query: 405 HERLPRRVGAVEHLLQDVQHLV 470
            E   R V  +E +L +   LV
Sbjct: 730 AELRQRNVEVLERMLNETFDLV 751

>VP2_BRD (P35934) Structural core protein VP2|
          Length = 908

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
 Frame = -3

Query: 545 NGTRLVDESDLRKYLAEFDRLYWPTYKVLDILQK----------VFYRSNAAREAFVEMC 396
           N    V+   L  + A + RL  P  ++ D+  +          ++ RS   +++   +C
Sbjct: 628 NSESFVEARPLDTWRAVYPRLPEPVRQIFDLTGQHSFVTGSDIGLWLRSPLVQDSLFLLC 687

Query: 395 ADDYVQRM--------TFDSYLYKRVVPGNPIEDIK 312
           A    Q +        T D Y++++ +PG P+ED++
Sbjct: 688 ARTAWQAVDDPADIGFTRDVYIHRQPIPGYPLEDVR 723

>INAR2_MOUSE (O35664) Interferon-alpha/beta receptor beta chain precursor|
           (IFN-alpha-REC) (Type I interferon receptor) (IFN-R)
           (Interferon alpha/beta receptor-2)
          Length = 513

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +3

Query: 234 RXQGELPHLPAQ----RDGPDEAADGVDSELDVLDG 329
           R Q  LP LP+Q     DG  E +D  DS+ DV DG
Sbjct: 474 RTQPPLPSLPSQDLWTEDGSSEKSDTSDSDADVGDG 509

>VGLB_PRVIF (P08355) Glycoprotein GII precursor|
          Length = 913

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 183 AASSNPSRMSGTFPVCRRXQGELPHLPAQRDGPDEAADGVDSELDVLDGV 332
           AAS++P+  +G  P     +  L  + A   GP EA DG   +LD    V
Sbjct: 64  AASASPTPGTGATPNDVSAEASLEEIEAFSPGPSEAPDGEYGDLDARTAV 113

>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1316

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 52  VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 222
           V  NG G  K R L R   +     S ++P     + A+P+ PP+LR       GRF
Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335

>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1316

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 52  VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 222
           V  NG G  K R L R   +     S ++P     + A+P+ PP+LR       GRF
Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335

>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1316

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 52  VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 222
           V  NG G  K R L R   +     S ++P     + A+P+ PP+LR       GRF
Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335

>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1316

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 52  VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 222
           V  NG G  K R L R   +     S ++P     + A+P+ PP+LR       GRF
Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335

>BCB1_ARATH (Q07488) Blue copper protein precursor (Blue copper-binding|
           protein) (AtBCB) (Stellacyanin) (Phytocyanin 1)
          Length = 196

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 434 GRTPSAGC-PAPCTLASRAGRTPPGTCAGRSRPPAAS 541
           G TP AG  PAP +  S  G TPP T  G + P  +S
Sbjct: 131 GATPGAGATPAPGSTPSTGGTTPP-TAGGTTTPSGSS 166

>VP6_BTV1S (Q03328) VP6 protein (Minor inner core protein VP6)|
          Length = 328

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 231 RRXQGELPHLPAQRDGPDE 287
           RR QG+ PH  AQR+GP+E
Sbjct: 207 RRKQGKKPHGDAQREGPEE 225

>ACSA_MOUSE (Q9QXG4) Acetyl-coenzyme A synthetase, cytoplasmic (EC 6.2.1.1)|
           (Acetate--CoA ligase) (Acyl-activating enzyme)
           (Acetyl-CoA synthetase) (ACS) (AceCS) (Acyl-CoA
           synthetase short-chain family member 2)
          Length = 701

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 228 CRRXQGELPHLPAQRDGPDEAADGVDSELDVLDGVARHDALVEVAVEGHPLHVVVGAHLH 407
           CRR Q     +  + D     +  + S  +V   +  H+A+ E AV GHP H V G  L+
Sbjct: 554 CRRDQDGYYWITGRIDDMLNVSGHLLSTAEVESALVEHEAVAEAAVVGHP-HPVKGECLY 612

>FZD5_MOUSE (Q9EQD0) Frizzled 5 precursor (Frizzled-5) (Fz-5) (mFz5)|
          Length = 577

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 174 RSAAASSNPSRMSGTFPVCRRXQGELPHLPAQ--RDGPDEA 290
           R+AAAS  P     T P+CR     L H+P Q   D  DEA
Sbjct: 23  RAAAASKAPVCQEITVPMCRGIGYNLTHMPNQFNHDTQDEA 63

>AGLU_ASPOR (Q12558) Alpha-glucosidase precursor (EC 3.2.1.20) (Maltase) (AGL)|
          Length = 985

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 5   LTTXPARTVLKSEHSPYKKMGQVRPRHDLSIDAIT 109
           L T P   V   +H PY  +  V+P HDLS+ AI+
Sbjct: 567 LRTTPTPGVRNVDHPPYV-INHVQPGHDLSVHAIS 600

>ZN592_HUMAN (Q92610) Zinc finger protein 592|
          Length = 1267

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -2

Query: 333  QPHRGHQARCQHHRQPRQGHRAAPGDGEAHLVIADTPETSLTSCLGCS 190
            +P  GH  +  H ++P  G   APG      V +     SL  C  CS
Sbjct: 1083 KPPGGHSPQVNHLKRPVSGVGDAPGTSNGATVSSTKRHKSLFQCAKCS 1130

>FZD5_HUMAN (Q13467) Frizzled 5 precursor (Frizzled-5) (Fz-5) (hFz5) (FzE5)|
          Length = 585

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 174 RSAAASSNPSRMSGTFPVCRRXQGELPHLPAQ--RDGPDEA 290
           R+AAAS  P     T P+CR     L H+P Q   D  DEA
Sbjct: 23  RAAAASKAPVCQEITVPMCRGIGYNLTHMPNQFNHDTQDEA 63

>ARGB_SYNPX (Q7U5C7) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)|
           (N-acetyl-L-glutamate 5-phosphotransferase)
          Length = 293

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 270 AAPGDGEAHLVIADTPETSLTSCLGCSKL 184
           A PGDG AH + ADT    L + L   KL
Sbjct: 177 ATPGDGRAHNINADTVAGELAAALEAEKL 205

>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1333

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 61  NGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 222
           NG G  K R L R   +     S ++P     ++AIP+ PP+LR       GRF
Sbjct: 283 NGKGQKKMRALKRLKVVAAFQRSGNDPAGMV-LNAIPVIPPELRPMVQLDGGRF 335

>HIS5_NEIG1 (Q5FA21) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 212

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 132 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRXQGELPHLPA--QRDGPDEA 290
           LKSVR+A  L   +     S +P R+S    V    QG +P   A   R G DEA
Sbjct: 17  LKSVRTAGQLAGKNTKIFLSGDPDRVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71

>FXL18_HUMAN (Q96ME1) F-box/LRR-repeat protein 18 (F-box and leucine-rich repeat|
           protein 18)
          Length = 805

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +1

Query: 160 SAIPIDPPQLRATQAGCQGRFRCVGDXKVSF--PISRRSAMALTRLPMVLTASLMSSMGL 333
           SA+P + P +R +   C  R + VGD +V+    ++    + L +LP VLT S + ++GL
Sbjct: 497 SAMPRNEPAIRNSLPPCS-RAQSVGDSEVAAIGQLAFLRHLTLAQLPSVLTGSGLVNIGL 555

>FCG2B_HUMAN (P31994) Low affinity immunoglobulin gamma Fc region receptor II-b|
           precursor (Fc-gamma RII-b) (FcRII-b) (IgG Fc receptor
           II-b) (Fc-gamma-RIIb) (CD32 antigen) (CDw32)
          Length = 310

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 219 FPVCRRXQGELPHLPAQRDGPDEAADGVDSELDVLDGVARH-DALVE 356
           +P CR     LP  PA    PDE AD V +E  +   +  H DAL E
Sbjct: 258 YPECREMGETLPEKPANPTNPDE-ADKVGAENTITYSLLMHPDALEE 303


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,014,492
Number of Sequences: 219361
Number of extensions: 1546543
Number of successful extensions: 5918
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 5651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5910
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)