ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaak4l16 |
|---|---|
| Clone Library Name | barley_pub |
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 58.2 bits (139), Expect = 3e-08 Identities = 31/80 (38%), Positives = 43/80 (53%) Frame = -3 Query: 528 RKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKK 349 RKCY+CG SGH+S CP+ +T G +P +S E +G S + Sbjct: 196 RKCYKCGESGHMSRECPSAGSTGSGDRACYKCG----KPGHISRECPEAGG-SYGGSRGG 250 Query: 348 KRRTCYECGIAGHLSSECPN 289 RTCY+CG AGH+S +CP+ Sbjct: 251 GDRTCYKCGEAGHISRDCPS 270 Score = 53.5 bits (127), Expect(2) = 3e-09 Identities = 29/83 (34%), Positives = 39/83 (46%) Frame = -3 Query: 537 SKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 +K +CY+CG GHLS CP+ + GG + + SGD Sbjct: 94 AKGFECYKCGQEGHLSRDCPSS--------QGGSRGGYGQKRGRSGAQGGYSGD------ 139 Query: 357 KKKKRRTCYECGIAGHLSSECPN 289 RTCY+CG AGH+S +CPN Sbjct: 140 -----RTCYKCGDAGHISRDCPN 157 Score = 52.4 bits (124), Expect = 2e-06 Identities = 48/182 (26%), Positives = 68/182 (37%) Frame = -3 Query: 834 TCYEXGVPGHLSSACPNKSAPEVIVDENKAQX*VSHXKHRRRDGHAMNVAFLAICRLLAQ 655 TC+ G GH+S CPN++ + H RD N A + Sbjct: 44 TCFRCGEEGHMSRECPNEARSGAAGAMTCFR--CGEAGHMSRD--CPNSAKPGAAKGFEC 99 Query: 654 NKSAXEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPN 475 K E + P + ++ + G+ S R CY+CG +GH+S CPN Sbjct: 100 YKCGQEGHLSRDCPSSQGGSRGGYGQKRGR--SGAQGGYSGDRTCYKCGDAGHISRDCPN 157 Query: 474 KKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 295 + GG S +GD RTCY+CG AGH+S +C Sbjct: 158 GQ------------GGYS-----------GAGD-----------RTCYKCGDAGHISRDC 183 Query: 294 PN 289 PN Sbjct: 184 PN 185 Score = 51.6 bits (122), Expect = 3e-06 Identities = 35/107 (32%), Positives = 46/107 (42%), Gaps = 1/107 (0%) Frame = -3 Query: 606 EPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGG 427 E YA +K D+ ST+ C+ CG GH+S CPN EA+ Sbjct: 24 EGHYARECPEADSKGDERSTT-------CFRCGEEGHMSRECPN---------EARSGAA 67 Query: 426 SSMEPSAVSVENKPSGDT-SSAPPKKKKRRTCYECGIAGHLSSECPN 289 +M S D +SA P K CY+CG GHLS +CP+ Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPS 114 Score = 42.7 bits (99), Expect = 0.001 Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Frame = -3 Query: 522 CYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKK- 346 C CG GH + CP EA G E S G S P + + Sbjct: 18 CRNCGKEGHYARECP----------EADSKGD---ERSTTCFRCGEEGHMSRECPNEARS 64 Query: 345 ----RRTCYECGIAGHLSSECPNMAK 280 TC+ CG AGH+S +CPN AK Sbjct: 65 GAAGAMTCFRCGEAGHMSRDCPNSAK 90 Score = 36.2 bits (82), Expect = 0.14 Identities = 29/122 (23%), Positives = 39/122 (31%) Frame = -3 Query: 840 DGTCYEXGVPGHLSSACPNKSAPEVIVDENKAQX*VSHXKHRRRDGHAMNVAFLAICRLL 661 D TCY+ G GH+S CPN + K H R+ C Sbjct: 167 DRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYK-CGESGHMSRE-----------CPSA 214 Query: 660 AQNKSAXEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSAC 481 S +P + P G R CY+CG +GH+S C Sbjct: 215 GSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGD------RTCYKCGEAGHISRDC 268 Query: 480 PN 475 P+ Sbjct: 269 PS 270 Score = 33.9 bits (76), Expect = 0.67 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -2 Query: 706 RTCYECGIPGHLSSACPK 653 R CY+CG PGH+S CP+ Sbjct: 222 RACYKCGKPGHISRECPE 239 Score = 32.0 bits (71), Expect = 2.6 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -2 Query: 706 RTCYECGIPGHLSSACP 656 RTCY+CG GH+S CP Sbjct: 253 RTCYKCGEAGHISRDCP 269 Score = 32.0 bits (71), Expect = 2.6 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -2 Query: 706 RTCYECGIPGHLSSACP 656 RTCY+CG GH+S CP Sbjct: 168 RTCYKCGDAGHISRDCP 184 Score = 32.0 bits (71), Expect = 2.6 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -2 Query: 706 RTCYECGIPGHLSSACP 656 RTCY+CG GH+S CP Sbjct: 140 RTCYKCGDAGHISRDCP 156 Score = 30.0 bits (66), Expect = 9.7 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -2 Query: 706 RTCYECGIPGHLSSACP 656 R CY+CG GH+S CP Sbjct: 196 RKCYKCGESGHMSRECP 212 Score = 28.1 bits (61), Expect(2) = 3e-09 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -2 Query: 703 TCYECGIPGHLSSACP 656 TC+ CG GH+S CP Sbjct: 71 TCFRCGEAGHMSRDCP 86
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline| helicase 2) Length = 974 Score = 43.9 bits (102), Expect(2) = 3e-06 Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 22/109 (20%) Frame = -3 Query: 540 PSKRRK---CYECGISGHLSSACPNKKATVISPEEAKP-------------VGGSSMEPS 409 P K R+ CY C GH S CP ++ P E + GG + E Sbjct: 389 PKKEREPRVCYNCQQPGHNSRDCPEER----KPREGRNGFTSGFGGGNDGGFGGGNAEGF 444 Query: 408 AVSVENKP------SGDTSSAPPKKKKRRTCYECGIAGHLSSECPNMAK 280 + E P G+ + + R C+ CG GH S+ECPN AK Sbjct: 445 GNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAK 493 Score = 32.7 bits (73), Expect = 1.5 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -3 Query: 552 STSAPSKRRKCYECGISGHLSSACPN 475 S P R C+ CG GH S+ CPN Sbjct: 465 SAECPEPPRGCFNCGEQGHRSNECPN 490 Score = 32.7 bits (73), Expect = 1.5 Identities = 20/92 (21%), Positives = 27/92 (29%) Frame = -3 Query: 555 GSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGD 376 G + C+ C GH S+ CP Sbjct: 248 GGQDRGERNNNCFNCQQPGHRSNDCPE--------------------------------- 274 Query: 375 TSSAPPKKKKRRTCYECGIAGHLSSECPNMAK 280 P K+++ R CY C GH S +CP K Sbjct: 275 ----PKKEREPRVCYNCQQPGHNSRDCPEERK 302 Score = 30.4 bits (67), Expect(2) = 0.022 Identities = 30/121 (24%), Positives = 41/121 (33%), Gaps = 34/121 (28%) Frame = -3 Query: 540 PSKRRK---CYECGISGHLSSACPNKKATVISPEEAKP--VGGSS--------------- 421 P K R+ CY C GH S CP ++ P E + GGSS Sbjct: 275 PKKEREPRVCYNCQQPGHNSRDCPEER----KPREGRNGFTGGSSGFGGGNGGGTGFDSG 330 Query: 420 MEPSAVSVENKPSGDTS--------------SAPPKKKKRRTCYECGIAGHLSSECPNMA 283 + S N SG S + ++ C+ C GH S++CP Sbjct: 331 LTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPK 390 Query: 282 K 280 K Sbjct: 391 K 391 Score = 27.3 bits (59), Expect(2) = 3e-06 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSACPK*K 647 ++ C+ C PGH S+ CP+ K Sbjct: 368 ERNNNCFNCQQPGHRSNDCPEPK 390 Score = 27.3 bits (59), Expect(2) = 0.022 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSACPK*K 647 ++ C+ C PGH S+ CP+ K Sbjct: 254 ERNNNCFNCQQPGHRSNDCPEPK 276
>GIS2_YEAST (P53849) Zinc-finger protein GIS2| Length = 153 Score = 43.5 bits (101), Expect(2) = 5e-06 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Frame = -3 Query: 528 RKCYECGISGHLSSACPN-KKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKK 352 ++C+ C +GH+S CP KK + S GG + E+ SG Sbjct: 65 QRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISG--------- 115 Query: 351 KKRRTCYECGIAGHLSSECPN 289 CY CG AGH+S +C N Sbjct: 116 ---LKCYTCGQAGHMSRDCQN 133 Score = 40.8 bits (94), Expect = 0.006 Identities = 27/101 (26%), Positives = 43/101 (42%) Frame = -3 Query: 531 RRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKK 352 ++ CY CG GHL+ C +++ + +M + + G+T + Sbjct: 3 QKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSEC 62 Query: 351 KKRRTCYECGIAGHLSSECPNMAK*SWWTSCFLVVSALRSG 229 +R C+ C GH+S ECP K TS F VS + G Sbjct: 63 TVQR-CFNCNQTGHISRECPEPKK----TSRFSKVSCYKCG 98 Score = 32.7 bits (73), Expect(2) = 0.025 Identities = 19/78 (24%), Positives = 23/78 (29%) Frame = -3 Query: 525 KCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKK 346 KCY CG +GH+S C N Sbjct: 117 KCYTCGQAGHMSRDCQND------------------------------------------ 134 Query: 345 RRTCYECGIAGHLSSECP 292 R CY C GH+S +CP Sbjct: 135 -RLCYNCNETGHISKDCP 151 Score = 29.3 bits (64), Expect(2) = 1.1 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = -2 Query: 706 RTCYECGIPGHLSSACPK 653 R CY C GH+S CPK Sbjct: 135 RLCYNCNETGHISKDCPK 152 Score = 26.9 bits (58), Expect(2) = 5e-06 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = -2 Query: 706 RTCYECGIPGHLSSACPK*KC 644 + CY CG GH+ S C +C Sbjct: 47 KQCYNCGETGHVRSECTVQRC 67 Score = 25.0 bits (53), Expect(2) = 0.025 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -2 Query: 700 CYECGIPGHLSSACPK*K 647 C+ C GH+S CP+ K Sbjct: 67 CFNCNQTGHISRECPEPK 84 Score = 22.7 bits (47), Expect(2) = 1.1 Identities = 8/16 (50%), Positives = 9/16 (56%) Frame = -3 Query: 831 CYEXGVPGHLSSACPN 784 CY G GH+S C N Sbjct: 118 CYTCGQAGHMSRDCQN 133
>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog| Length = 179 Score = 42.7 bits (99), Expect = 0.001 Identities = 24/98 (24%), Positives = 38/98 (38%) Frame = -3 Query: 549 TSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTS 370 T+ P R CY CG +GH + C ++ +G + Sbjct: 12 TTRPGPR--CYNCGENGHQARECTK---------------------GSICYNCNQTGHKA 48 Query: 369 SAPPKKKKRRTCYECGIAGHLSSECPNMAK*SWWTSCF 256 S + ++ +TCY CG AGHL +CP+ C+ Sbjct: 49 SECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECY 86 Score = 36.2 bits (82), Expect = 0.14 Identities = 18/82 (21%), Positives = 28/82 (34%) Frame = -3 Query: 540 PSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAP 361 P + + CY CG +GHL CP+ Sbjct: 54 PQQEKTCYACGTAGHLVRDCPSS------------------------------------- 76 Query: 360 PKKKKRRTCYECGIAGHLSSEC 295 P ++ CY+CG GH++ +C Sbjct: 77 PNPRQGAECYKCGRVGHIARDC 98 Score = 33.5 bits (75), Expect(2) = 5e-04 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Frame = -3 Query: 561 DDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGG--SSMEPSAVSVENK 388 D S+ P + +CY+CG GH++ C + GG S+M A Sbjct: 72 DCPSSPNPRQGAECYKCGRVGHIARDCRTN-----GQQSGGRFGGHRSNMNCYACGSYGH 126 Query: 387 PSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 295 + D + CY CG GH S EC Sbjct: 127 QARDCTMGV-------KCYSCGKIGHRSFEC 150 Score = 30.0 bits (66), Expect(2) = 5e-04 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSACP 656 ++ +TCY CG GHL CP Sbjct: 55 QQEKTCYACGTAGHLVRDCP 74 Score = 26.6 bits (57), Expect(2) = 1.8 Identities = 10/21 (47%), Positives = 11/21 (52%) Frame = -3 Query: 834 TCYEXGVPGHLSSACPNKSAP 772 TCY G GHL CP+ P Sbjct: 59 TCYACGTAGHLVRDCPSSPNP 79 Score = 24.6 bits (52), Expect(2) = 1.8 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = -2 Query: 745 PIXSQPXQASKKRRTCYECGIPGHLSSAC 659 P P Q ++ CY+CG GH++ C Sbjct: 74 PSSPNPRQGAE----CYKCGRVGHIARDC 98
>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 36.6 bits (83), Expect = 0.10 Identities = 19/71 (26%), Positives = 29/71 (40%) Frame = -3 Query: 681 LAICRLLAQNKSAXEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGIS 502 L CR++ KS + + + P + + TS P R+CY CG + Sbjct: 352 LEACRVVGSQKSKMQFLVAAMKEMGIQSPIPAVLPHTPEAYASQTSGPEDGRRCYGCGKT 411 Query: 501 GHLSSACPNKK 469 GHL C +K Sbjct: 412 GHLKRNCKQQK 422 Score = 33.1 bits (74), Expect(2) = 0.001 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 K++KCY CG GH + C +K S P G S +P ++ S T SAPP Sbjct: 419 KQQKCYHCGKPGHQARNCRSKNGKCSS----APYGQRS-QPQNNFHQSNMSSVTPSAPP 472 Score = 28.9 bits (63), Expect(2) = 0.001 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -2 Query: 706 RTCYECGIPGHLSSACPK*KC 644 R CY CG GHL C + KC Sbjct: 403 RRCYGCGKTGHLKRNCKQQKC 423
>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 36.6 bits (83), Expect = 0.10 Identities = 19/71 (26%), Positives = 29/71 (40%) Frame = -3 Query: 681 LAICRLLAQNKSAXEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGIS 502 L CR++ KS + + + P + + TS P R+CY CG + Sbjct: 352 LEACRVVGSQKSKMQFLVAAMKEMGIQSPIPAVLPHTPEAYASQTSGPEDGRRCYGCGKT 411 Query: 501 GHLSSACPNKK 469 GHL C +K Sbjct: 412 GHLKRNCKQQK 422 Score = 33.1 bits (74), Expect(2) = 0.001 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 K++KCY CG GH + C +K S P G S +P ++ S T SAPP Sbjct: 419 KQQKCYHCGKPGHQARNCRSKNGKCSS----APYGQRS-QPQNNFHQSNMSSVTPSAPP 472 Score = 28.9 bits (63), Expect(2) = 0.001 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -2 Query: 706 RTCYECGIPGHLSSACPK*KC 644 R CY CG GHL C + KC Sbjct: 403 RRCYGCGKTGHLKRNCKQQKC 423
>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 172 Score = 36.2 bits (82), Expect(2) = 0.002 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Frame = -3 Query: 540 PSKRRK--CYECGISGHLSSACPNKKATVISPEEAKPVGG-SSMEPSAVSVENKPSGDTS 370 P + R+ CY CG GHL+ C + ++ G ++ V+ G+T Sbjct: 85 PKREREQCCYNCGKPGHLARDCDHA-----DEQKCYSCGEFGHIQKDCTKVKCYRCGETG 139 Query: 369 SAPPK--KKKRRTCYECGIAGHLSSEC 295 K CY CG +GHL+ EC Sbjct: 140 HVAINCSKTSEVNCYRCGESGHLAREC 166 Score = 33.9 bits (76), Expect = 0.67 Identities = 17/78 (21%), Positives = 26/78 (33%) Frame = -3 Query: 528 RKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKK 349 + CY CG GH++ C PK++ Sbjct: 67 KACYNCGRGGHIAKDCKE--------------------------------------PKRE 88 Query: 348 KRRTCYECGIAGHLSSEC 295 + + CY CG GHL+ +C Sbjct: 89 REQCCYNCGKPGHLARDC 106 Score = 33.5 bits (75), Expect = 0.88 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Frame = -3 Query: 525 KCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP-KKK 349 +C++CG +GH + CP G M S + + A + Sbjct: 5 ECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQ 64 Query: 348 KRRTCYECGIAGHLSSEC 295 + + CY CG GH++ +C Sbjct: 65 EDKACYNCGRGGHIAKDC 82 Score = 25.0 bits (53), Expect(2) = 0.002 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = -2 Query: 706 RTCYECGIPGHLSSACPK*K 647 + CY CG GH++ C + K Sbjct: 67 KACYNCGRGGHIAKDCKEPK 86
>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 178 Score = 36.2 bits (82), Expect(2) = 0.004 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Frame = -3 Query: 540 PSKRRK--CYECGISGHLSSACPNKKATVISPEEAKPVGG-SSMEPSAVSVENKPSGDTS 370 P + R+ CY CG GHL+ C + ++ G ++ V+ G+T Sbjct: 91 PKREREQCCYNCGKPGHLARDCDHA-----DEQKCYSCGEFGHIQKDCTKVKCYRCGETG 145 Query: 369 SAPPK--KKKRRTCYECGIAGHLSSEC 295 K CY CG +GHL+ EC Sbjct: 146 HVAINCSKTSEVNCYRCGESGHLAREC 172 Score = 33.5 bits (75), Expect = 0.88 Identities = 17/76 (22%), Positives = 25/76 (32%) Frame = -3 Query: 522 CYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKR 343 CY CG GH++ C PK+++ Sbjct: 75 CYNCGRGGHIAKDCKE--------------------------------------PKRERE 96 Query: 342 RTCYECGIAGHLSSEC 295 + CY CG GHL+ +C Sbjct: 97 QCCYNCGKPGHLARDC 112 Score = 33.5 bits (75), Expect = 0.88 Identities = 22/77 (28%), Positives = 34/77 (44%) Frame = -3 Query: 525 KCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKK 346 +C++CG SGH + CP ++ GG + + V +SS P Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMR-SRGRGGFTSDRGFQFV-------SSSLPD---- 52 Query: 345 RRTCYECGIAGHLSSEC 295 CY CG +GHL+ +C Sbjct: 53 --ICYRCGESGHLAKDC 67 Score = 24.3 bits (51), Expect(2) = 0.004 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -2 Query: 700 CYECGIPGHLSSACPK*K 647 CY CG GH++ C + K Sbjct: 75 CYNCGRGGHIAKDCKEPK 92
>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 36.2 bits (82), Expect(2) = 0.004 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Frame = -3 Query: 540 PSKRRK--CYECGISGHLSSACPNKKATVISPEEAKPVGG-SSMEPSAVSVENKPSGDTS 370 P + R+ CY CG GHL+ C + ++ G ++ V+ G+T Sbjct: 90 PKREREQCCYNCGKPGHLARDCDHA-----DEQKCYSCGEFGHIQKDCTKVKCYRCGETG 144 Query: 369 SAPPK--KKKRRTCYECGIAGHLSSEC 295 K CY CG +GHL+ EC Sbjct: 145 HVAINCSKTSEVNCYRCGESGHLAREC 171 Score = 33.5 bits (75), Expect = 0.88 Identities = 17/76 (22%), Positives = 25/76 (32%) Frame = -3 Query: 522 CYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKR 343 CY CG GH++ C PK+++ Sbjct: 74 CYNCGRGGHIAKDCKE--------------------------------------PKRERE 95 Query: 342 RTCYECGIAGHLSSEC 295 + CY CG GHL+ +C Sbjct: 96 QCCYNCGKPGHLARDC 111 Score = 33.5 bits (75), Expect = 0.88 Identities = 22/77 (28%), Positives = 34/77 (44%) Frame = -3 Query: 525 KCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKK 346 +C++CG SGH + CP ++ GG + + V +SS P Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMR-SRGRGGFTSDRGFQFV-------SSSLPD---- 52 Query: 345 RRTCYECGIAGHLSSEC 295 CY CG +GHL+ +C Sbjct: 53 --ICYRCGESGHLAKDC 67 Score = 24.3 bits (51), Expect(2) = 0.004 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -2 Query: 700 CYECGIPGHLSSACPK*K 647 CY CG GH++ C + K Sbjct: 74 CYNCGRGGHIAKDCKEPK 91
>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 36.2 bits (82), Expect(2) = 0.004 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Frame = -3 Query: 540 PSKRRK--CYECGISGHLSSACPNKKATVISPEEAKPVGG-SSMEPSAVSVENKPSGDTS 370 P + R+ CY CG GHL+ C + ++ G ++ V+ G+T Sbjct: 90 PKREREQCCYNCGKPGHLARDCDHA-----DEQKCYSCGEFGHIQKDCTKVKCYRCGETG 144 Query: 369 SAPPK--KKKRRTCYECGIAGHLSSEC 295 K CY CG +GHL+ EC Sbjct: 145 HVAINCSKTSEVNCYRCGESGHLAREC 171 Score = 33.5 bits (75), Expect = 0.88 Identities = 17/76 (22%), Positives = 25/76 (32%) Frame = -3 Query: 522 CYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKR 343 CY CG GH++ C PK+++ Sbjct: 74 CYNCGRGGHIAKDCKE--------------------------------------PKRERE 95 Query: 342 RTCYECGIAGHLSSEC 295 + CY CG GHL+ +C Sbjct: 96 QCCYNCGKPGHLARDC 111 Score = 33.5 bits (75), Expect = 0.88 Identities = 22/77 (28%), Positives = 34/77 (44%) Frame = -3 Query: 525 KCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKK 346 +C++CG SGH + CP ++ GG + + V +SS P Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMR-SRGRGGFTSDRGFQFV-------SSSLPD---- 52 Query: 345 RRTCYECGIAGHLSSEC 295 CY CG +GHL+ +C Sbjct: 53 --ICYRCGESGHLAKDC 67 Score = 24.3 bits (51), Expect(2) = 0.004 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -2 Query: 700 CYECGIPGHLSSACPK*K 647 CY CG GH++ C + K Sbjct: 74 CYNCGRGGHIAKDCKEPK 91
>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 36.2 bits (82), Expect(2) = 0.004 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Frame = -3 Query: 540 PSKRRK--CYECGISGHLSSACPNKKATVISPEEAKPVGG-SSMEPSAVSVENKPSGDTS 370 P + R+ CY CG GHL+ C + ++ G ++ V+ G+T Sbjct: 90 PKREREQCCYNCGKPGHLARDCDHA-----DEQKCYSCGEFGHIQKDCTKVKCYRCGETG 144 Query: 369 SAPPK--KKKRRTCYECGIAGHLSSEC 295 K CY CG +GHL+ EC Sbjct: 145 HVAINCSKTSEVNCYRCGESGHLAREC 171 Score = 33.5 bits (75), Expect = 0.88 Identities = 17/76 (22%), Positives = 25/76 (32%) Frame = -3 Query: 522 CYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKR 343 CY CG GH++ C PK+++ Sbjct: 74 CYNCGRGGHIAKDCKE--------------------------------------PKRERE 95 Query: 342 RTCYECGIAGHLSSEC 295 + CY CG GHL+ +C Sbjct: 96 QCCYNCGKPGHLARDC 111 Score = 33.5 bits (75), Expect = 0.88 Identities = 22/77 (28%), Positives = 34/77 (44%) Frame = -3 Query: 525 KCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKK 346 +C++CG SGH + CP ++ GG + + V +SS P Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMR-SRGRGGFTSDRGFQFV-------SSSLPD---- 52 Query: 345 RRTCYECGIAGHLSSEC 295 CY CG +GHL+ +C Sbjct: 53 --ICYRCGESGHLAKDC 67 Score = 24.3 bits (51), Expect(2) = 0.004 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -2 Query: 700 CYECGIPGHLSSACPK*K 647 CY CG GH++ C + K Sbjct: 74 CYNCGRGGHIAKDCKEPK 91
>GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 40.4 bits (93), Expect = 0.007 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%) Frame = -3 Query: 603 PKYAPYMASEQNKI-------DDGSTS----APSKRRKCYECGISGHLSSACPNKKATVI 457 P P+ A++Q + DG ++ AP +R+ C++CG SGH+ + CP ++A + Sbjct: 374 PAPIPFAAAQQRRTIKCWNCGKDGHSARQCRAP-RRQGCWKCGKSGHVMANCPERQAGFL 432 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 +G +P V P G T +APP Sbjct: 433 G------IGPWGKKPRNFPVTRVPQGLTPTAPP 459
>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 40.0 bits (92), Expect = 0.009 Identities = 19/59 (32%), Positives = 31/59 (52%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 +R+ C++CG +GH+ S CP ++A + +G +P + P G T SAPP Sbjct: 406 RRQGCWKCGKTGHIMSKCPERQAGFLG------LGPWGKKPRNFPMTQVPQGVTPSAPP 458 Score = 30.0 bits (66), Expect = 9.7 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = -3 Query: 348 KRRTCYECGIAGHLSSECP 292 +R+ C++CG GH+ S+CP Sbjct: 406 RRQGCWKCGKTGHIMSKCP 424
>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11| Length = 1644 Score = 40.0 bits (92), Expect = 0.009 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 4/85 (4%) Frame = -3 Query: 528 RKCYECGISGHLSSACPNKKATVI----SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAP 361 R C CG GH CP +K+ + E + G + S ++ + DT Sbjct: 1293 RCCRVCGKIGHYMKDCPKRKSLLFRLKKKDSEEEKEGNEEEKDSRDVLDPRDLHDTRDFR 1352 Query: 360 PKKKKRRTCYECGIAGHLSSECPNM 286 + R C+ CG AGH+ ECP + Sbjct: 1353 DPRDLR--CFICGDAGHVRRECPEV 1375 Score = 31.2 bits (69), Expect = 4.4 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 12/67 (17%) Frame = -3 Query: 525 KCYECGISGHLSSACPNKKAT------------VISPEEAKPVGGSSMEPSAVSVENKPS 382 +C+ CG +GH+ CP K V + A+ V GS+ + S+ + S Sbjct: 1358 RCFICGDAGHVRRECPEVKLARQRNSSVAAAQLVRNLVNAQQVAGSAQQQGDQSIRTRQS 1417 Query: 381 GDTSSAP 361 + S +P Sbjct: 1418 SECSESP 1424
>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline| helicase 1) Length = 763 Score = 39.7 bits (91), Expect = 0.012 Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 23/106 (21%) Frame = -3 Query: 528 RKCYECGISGHLSSACPNKKATVISPEEAKPVG----------------------GSSME 415 R CY C GH S C ++ P E + G G E Sbjct: 183 RVCYNCQQPGHTSRECTEER----KPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEE 238 Query: 414 PSAVSVEN-KPSGDTSSAPPKKKKRRTCYECGIAGHLSSECPNMAK 280 + N K G S+ P+ R C+ CG GH S+ECPN AK Sbjct: 239 RGPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECPNPAK 282 Score = 33.1 bits (74), Expect = 1.1 Identities = 21/93 (22%), Positives = 27/93 (29%) Frame = -3 Query: 558 DGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSG 379 +G + C+ C GH SS CP Sbjct: 148 EGGHGGGERNNNCFNCQQPGHRSSDCPE-------------------------------- 175 Query: 378 DTSSAPPKKKKRRTCYECGIAGHLSSECPNMAK 280 P K+++ R CY C GH S EC K Sbjct: 176 -----PRKEREPRVCYNCQQPGHTSRECTEERK 203 Score = 32.7 bits (73), Expect = 1.5 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -3 Query: 552 STSAPSKRRKCYECGISGHLSSACPN 475 S P R C+ CG GH S+ CPN Sbjct: 254 SAECPEPPRGCFNCGEQGHRSNECPN 279
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 32.3 bits (72), Expect(2) = 0.016 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 382 +++ C++CG GH C ++A + A P G + PS + N P+ Sbjct: 414 RKKGCWKCGKEGHQMKDCTERQANFLRENLAFPQGKAREFPSEQTRANSPT 464 Score = 25.8 bits (55), Expect(2) = 0.016 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +KR C+ CG GHL+ C Sbjct: 392 QKRIKCFNCGKEGHLARNC 410
>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline| helicase 4) Length = 1156 Score = 38.1 bits (87), Expect = 0.036 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 7/96 (7%) Frame = -3 Query: 555 GSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGD 376 G+ + R C+ CG GH+S C K + +G + + V P + Sbjct: 561 GNWDGGERPRGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRN 620 Query: 375 TS-------SAPPKKKKRRTCYECGIAGHLSSECPN 289 K R C CG GH + +C N Sbjct: 621 CGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQN 656 Score = 29.6 bits (65), Expect(2) = 0.017 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSACPK*KCP 641 ++ R C+ CG GH+S C K K P Sbjct: 567 ERPRGCHNCGEEGHISKECDKPKVP 591 Score = 28.5 bits (62), Expect(2) = 0.017 Identities = 20/84 (23%), Positives = 25/84 (29%) Frame = -3 Query: 531 RRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKK 352 R C CGI GH + C K G + + V +P+ Sbjct: 615 RGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPT---------- 664 Query: 351 KKRRTCYECGIAGHLSSECPNMAK 280 C C GH ECP K Sbjct: 665 ---EPCRRCAEEGHWGYECPTRPK 685
>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 38.5 bits (88), Expect = 0.027 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 +R+ C++CG GH+ + CP+++A + +G +P V P G T +APP Sbjct: 407 RRQGCWKCGKPGHIMTNCPDRQAGFLG------IGPWGKKPRNFPVAQVPQGLTPTAPP 459 Score = 30.4 bits (67), Expect = 7.5 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = -2 Query: 712 KRRTCYECGIPGHLSSACP 656 +R+ C++CG PGH+ + CP Sbjct: 407 RRQGCWKCGKPGHIMTNCP 425
>GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 38.1 bits (87), Expect = 0.036 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 +R+ C++CG +GH+ + CP ++A + +G +P V P G T +APP Sbjct: 407 RRQGCWKCGKAGHIMAKCPERQAGFLG------LGPWGKKPRNFPVAQIPQGLTPTAPP 459 Score = 30.4 bits (67), Expect = 7.5 Identities = 9/19 (47%), Positives = 16/19 (84%) Frame = -3 Query: 348 KRRTCYECGIAGHLSSECP 292 +R+ C++CG AGH+ ++CP Sbjct: 407 RRQGCWKCGKAGHIMAKCP 425
>GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 521 Score = 38.1 bits (87), Expect = 0.036 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 11/93 (11%) Frame = -3 Query: 603 PKYAPYMASEQNKI-------DDGSTS----APSKRRKCYECGISGHLSSACPNKKATVI 457 P P+ A++Q K +G ++ AP +R+ C++CG GH+ + CP+++A + Sbjct: 374 PAPIPFAAAQQRKAFKCWNCGKEGHSARQCRAP-RRQGCWKCGKPGHIMTNCPDRQAGFL 432 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 +G +P V P G T +APP Sbjct: 433 G------LGPWGKKPRNFPVAQVPQGLTPTAPP 459 Score = 30.8 bits (68), Expect = 5.7 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%) Frame = -3 Query: 480 PNKKATVISPEEAKPVGGSSMEPSAVSVENKP-------SGDTSSAPPKKKKRRTCYECG 322 P +KA +++ E K V G + P A + + K S+ + +R+ C++CG Sbjct: 357 PGQKARLMA-EALKEVIGPAPIPFAAAQQRKAFKCWNCGKEGHSARQCRAPRRQGCWKCG 415 Query: 321 IAGHLSSECPN 289 GH+ + CP+ Sbjct: 416 KPGHIMTNCPD 426 Score = 30.4 bits (67), Expect = 7.5 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = -2 Query: 712 KRRTCYECGIPGHLSSACP 656 +R+ C++CG PGH+ + CP Sbjct: 407 RRQGCWKCGKPGHIMTNCP 425
>GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 507 Score = 37.7 bits (86), Expect = 0.047 Identities = 17/60 (28%), Positives = 32/60 (53%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 355 +R+ C++CG +GH+ + CP ++A + +G +P + P G T +APP+ Sbjct: 411 RRQGCWKCGKAGHVMAKCPERQAGFLG------LGPWGKKPRNFPMAQMPQGLTPTAPPE 464 Score = 30.0 bits (66), Expect = 9.7 Identities = 9/19 (47%), Positives = 16/19 (84%) Frame = -3 Query: 348 KRRTCYECGIAGHLSSECP 292 +R+ C++CG AGH+ ++CP Sbjct: 411 RRQGCWKCGKAGHVMAKCP 429
>GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 521 Score = 37.7 bits (86), Expect = 0.047 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 11/93 (11%) Frame = -3 Query: 603 PKYAPYMASEQNKI-------DDGSTS----APSKRRKCYECGISGHLSSACPNKKATVI 457 P P+ A++Q K+ +G ++ AP +R+ C++CG +GH+ + CP ++A + Sbjct: 375 PPPIPFAAAQQRKVIRCWNCGKEGHSARQCRAP-RRQGCWKCGKTGHVMAKCPERQAGFL 433 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 +G +P V P G +APP Sbjct: 434 G------MGPWGKKPRNFPVAQAPPGLIPTAPP 460
>GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 35.8 bits (81), Expect(2) = 0.048 Identities = 16/29 (55%), Positives = 18/29 (62%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSACPK*KCP*GCF 629 K +TCY CG PGHLSS C + P CF Sbjct: 378 KAAQTCYNCGKPGHLSSQC---RAPKVCF 403 Score = 32.7 bits (73), Expect = 1.5 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -3 Query: 351 KKRRTCYECGIAGHLSSEC 295 K +TCY CG GHLSS+C Sbjct: 378 KAAQTCYNCGKPGHLSSQC 396 Score = 29.6 bits (65), Expect(2) = 0.22 Identities = 14/23 (60%), Positives = 15/23 (65%) Frame = -3 Query: 834 TCYEXGVPGHLSSACPNKSAPEV 766 TCY G PGHLSS C AP+V Sbjct: 382 TCYNCGKPGHLSSQC---RAPKV 401 Score = 24.6 bits (52), Expect(2) = 0.22 Identities = 7/16 (43%), Positives = 10/16 (62%) Frame = -2 Query: 706 RTCYECGIPGHLSSAC 659 + C++C PGH S C Sbjct: 400 KVCFKCKQPGHFSKQC 415 Score = 20.8 bits (42), Expect(2) = 0.048 Identities = 6/14 (42%), Positives = 8/14 (57%) Frame = -3 Query: 522 CYECGISGHLSSAC 481 C++C GH S C Sbjct: 402 CFKCKQPGHFSKQC 415
>GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 35.8 bits (81), Expect(2) = 0.048 Identities = 16/29 (55%), Positives = 18/29 (62%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSACPK*KCP*GCF 629 K +TCY CG PGHLSS C + P CF Sbjct: 378 KAAQTCYNCGKPGHLSSQC---RAPKVCF 403 Score = 32.7 bits (73), Expect = 1.5 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -3 Query: 351 KKRRTCYECGIAGHLSSEC 295 K +TCY CG GHLSS+C Sbjct: 378 KAAQTCYNCGKPGHLSSQC 396 Score = 29.6 bits (65), Expect(2) = 0.22 Identities = 14/23 (60%), Positives = 15/23 (65%) Frame = -3 Query: 834 TCYEXGVPGHLSSACPNKSAPEV 766 TCY G PGHLSS C AP+V Sbjct: 382 TCYNCGKPGHLSSQC---RAPKV 401 Score = 24.6 bits (52), Expect(2) = 0.22 Identities = 7/16 (43%), Positives = 10/16 (62%) Frame = -2 Query: 706 RTCYECGIPGHLSSAC 659 + C++C PGH S C Sbjct: 400 KVCFKCKQPGHFSKQC 415 Score = 20.8 bits (42), Expect(2) = 0.048 Identities = 6/14 (42%), Positives = 8/14 (57%) Frame = -3 Query: 522 CYECGISGHLSSAC 481 C++C GH S C Sbjct: 402 CFKCKQPGHFSKQC 415
>GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 35.8 bits (81), Expect(2) = 0.048 Identities = 16/29 (55%), Positives = 18/29 (62%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSACPK*KCP*GCF 629 K +TCY CG PGHLSS C + P CF Sbjct: 378 KAAQTCYNCGKPGHLSSQC---RAPKVCF 403 Score = 32.7 bits (73), Expect = 1.5 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -3 Query: 351 KKRRTCYECGIAGHLSSEC 295 K +TCY CG GHLSS+C Sbjct: 378 KAAQTCYNCGKPGHLSSQC 396 Score = 29.6 bits (65), Expect(2) = 0.22 Identities = 14/23 (60%), Positives = 15/23 (65%) Frame = -3 Query: 834 TCYEXGVPGHLSSACPNKSAPEV 766 TCY G PGHLSS C AP+V Sbjct: 382 TCYNCGKPGHLSSQC---RAPKV 401 Score = 24.6 bits (52), Expect(2) = 0.22 Identities = 7/16 (43%), Positives = 10/16 (62%) Frame = -2 Query: 706 RTCYECGIPGHLSSAC 659 + C++C PGH S C Sbjct: 400 KVCFKCKQPGHFSKQC 415 Score = 20.8 bits (42), Expect(2) = 0.048 Identities = 6/14 (42%), Positives = 8/14 (57%) Frame = -3 Query: 522 CYECGISGHLSSAC 481 C++C GH S C Sbjct: 402 CFKCKQPGHFSKQC 415
>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13| Length = 166 Score = 36.6 bits (83), Expect = 0.10 Identities = 19/76 (25%), Positives = 28/76 (36%) Frame = -3 Query: 522 CYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKR 343 CY CG SGH++ C + PK+++R Sbjct: 67 CYNCGRSGHIAKDCKD--------------------------------------PKRERR 88 Query: 342 RTCYECGIAGHLSSEC 295 + CY CG GHL+ +C Sbjct: 89 QHCYTCGRLGHLARDC 104 Score = 30.0 bits (66), Expect(2) = 0.24 Identities = 17/80 (21%), Positives = 25/80 (31%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 355 +R+ CY CG GHL+ C Sbjct: 87 RRQHCYTCGRLGHLARDC-----------------------------------------D 105 Query: 354 KKKRRTCYECGIAGHLSSEC 295 ++K + CY CG GH+ +C Sbjct: 106 RQKEQKCYSCGKLGHIQKDC 125 Score = 29.3 bits (64), Expect(2) = 0.053 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSACPK*KC 644 +K + CY CG GH+ C + KC Sbjct: 107 QKEQKCYSCGKLGHIQKDCAQVKC 130 Score = 28.5 bits (62), Expect(2) = 0.11 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKK 469 K +KCY CG GH+ C K Sbjct: 108 KEQKCYSCGKLGHIQKDCAQVK 129 Score = 27.3 bits (59), Expect(2) = 0.053 Identities = 11/36 (30%), Positives = 15/36 (41%) Frame = -3 Query: 525 KCYECGISGHLSSACPNKKATVISPEEAKPVGGSSM 418 KCY CG GH++ C + + P P M Sbjct: 129 KCYRCGEIGHVAINCSKARPGQLLPLRQIPTSSQGM 164 Score = 26.9 bits (58), Expect(2) = 0.11 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSACPK*K 647 ++R+ CY CG GHL+ C + K Sbjct: 86 ERRQHCYTCGRLGHLARDCDRQK 108 Score = 24.3 bits (51), Expect(2) = 0.24 Identities = 7/14 (50%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 CY CG GH++ C Sbjct: 67 CYNCGRSGHIAKDC 80
>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 37.4 bits (85), Expect = 0.061 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 12/99 (12%) Frame = -3 Query: 603 PKYAPYMASEQNKI-------DDGSTS----APSKRRKCYECGISGHLSSACPNKKATVI 457 P P+ A++Q + DG ++ AP +R+ C++CG SGH+ + CP ++A + Sbjct: 374 PAPIPFAAAQQRRTIKCWNCGKDGHSARQCRAP-RRQGCWKCGKSGHVMANCPERQAGFL 432 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPSG-DTSSAPPKKKKR 343 P+G E S + + P+G DT+S P + R Sbjct: 433 ---RDWPMG---KEASQLPRDPSPAGADTNSTPSRPSSR 465
>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7| Length = 542 Score = 32.0 bits (71), Expect(2) = 0.062 Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 23/106 (21%) Frame = -3 Query: 540 PSKRRKCYECGISGHLSSACPNK------------KATVISPEEAKPVGGSSM----EPS 409 P K R+C+ C GHL +CP + + K M + Sbjct: 258 PRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDA 317 Query: 408 AVSVENKPSGDTSSAPPKKKKRRT-------CYECGIAGHLSSECP 292 + + T PPKK K + CY C GH ECP Sbjct: 318 CTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYGHECP 363 Score = 24.3 bits (51), Expect(2) = 0.062 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = -2 Query: 736 SQPXQASKKRRTCYECGIPGHLSSACP 656 +Q ++ K C C GHLS CP Sbjct: 230 TQRYYSANKNIICRNCDKRGHLSKNCP 256
>GAG_HV1OY (P20889) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 498 Score = 32.7 bits (73), Expect(2) = 0.062 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +++ C++CG GH C ++A + P G + EP+A E+ G+ Sbjct: 407 RKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPAESFGFGEE 466 Query: 372 SSAPPKKKK 346 ++ PP+K++ Sbjct: 467 TTTPPQKQE 475 Score = 23.5 bits (49), Expect(2) = 0.062 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH++ C Sbjct: 385 RKTVKCFNCGKEGHIAKNC 403
>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 37.0 bits (84), Expect = 0.080 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 +R+ C++CG SGH+ + CP ++A + +G +P P G +APP Sbjct: 407 RRQGCWKCGKSGHIMANCPERQAGFLG------MGPRGKQPRNFPAAQAPQGLIPTAPP 459
>GAG_HV2BE (P18095) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 37.0 bits (84), Expect = 0.080 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 11/93 (11%) Frame = -3 Query: 603 PKYAPYMASEQNKI-------DDGSTS----APSKRRKCYECGISGHLSSACPNKKATVI 457 P P+ A++Q K +G ++ AP +R+ C++CG GH+ + CP ++A + Sbjct: 374 PSPIPFAAAQQRKAIRYWNCGKEGHSARQCRAP-RRQGCWKCGKPGHIMANCPERQAGFL 432 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 +G +P V P G +APP Sbjct: 433 G------LGPRGKKPRNFPVTQAPQGLIPTAPP 459 Score = 30.8 bits (68), Expect = 5.7 Identities = 9/20 (45%), Positives = 16/20 (80%) Frame = -2 Query: 712 KRRTCYECGIPGHLSSACPK 653 +R+ C++CG PGH+ + CP+ Sbjct: 407 RRQGCWKCGKPGHIMANCPE 426 Score = 30.4 bits (67), Expect = 7.5 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Frame = -3 Query: 480 PNKKATVISPEEAKPVGGSSMEPSAVSVENKP-------SGDTSSAPPKKKKRRTCYECG 322 P +KA +++ E K G S P A + + K S+ + +R+ C++CG Sbjct: 357 PGQKARLMA-EALKEAMGPSPIPFAAAQQRKAIRYWNCGKEGHSARQCRAPRRQGCWKCG 415 Query: 321 IAGHLSSECP 292 GH+ + CP Sbjct: 416 KPGHIMANCP 425
>GAG_HV2NZ (P05891) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 518 Score = 37.0 bits (84), Expect = 0.080 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 11/93 (11%) Frame = -3 Query: 603 PKYAPYMASEQNKI-------DDGST----SAPSKRRKCYECGISGHLSSACPNKKATVI 457 P P+ A++Q K +G + SAP +R+ C++CG SGH+ + CP+++A + Sbjct: 372 PAPIPFAAAQQRKTFKCWNCGKEGHSARQWSAP-RRQGCWKCGKSGHVMANCPDRQAGFL 430 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 +G + P G T +APP Sbjct: 431 G------IGHWGKKARNFPAAQVPQGLTPTAPP 457
>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 37.0 bits (84), Expect = 0.080 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 +R+ C++CG SGH+ + CP ++A + K PS+ + + + SS+ P Sbjct: 407 RRQGCWKCGKSGHIMANCPERQAGFLDGPTGKAAPQLPRGPSSSGADTNSTPNRSSSGP 465
>GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 32.3 bits (72), Expect(2) = 0.080 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +++ C++CG GH C ++A + P G S EP+A S E+ G+ Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPSEESVRFGEE 467 Query: 372 SSAPPKKKK 346 ++ P +K++ Sbjct: 468 TTTPSQKQE 476 Score = 23.5 bits (49), Expect(2) = 0.080 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH++ C Sbjct: 386 RKTVKCFNCGKEGHIAKNC 404
>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 32.7 bits (73), Expect(2) = 0.13 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +++ C++CG GH C ++A + P G S EP+A E+ SG Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVE 467 Query: 372 SSAPPKKKK 346 ++ PP+K++ Sbjct: 468 TTTPPQKQE 476 Score = 22.3 bits (46), Expect(2) = 0.13 Identities = 6/14 (42%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GH++ C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 32.7 bits (73), Expect(2) = 0.13 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +++ C++CG GH C ++A + P G S EP+A E+ GD Sbjct: 408 RKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGDE 467 Query: 372 SSAPPKKKKRR 340 ++ P +K++ R Sbjct: 468 TTTPSQKQEPR 478 Score = 22.3 bits (46), Expect(2) = 0.13 Identities = 6/14 (42%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GH++ C Sbjct: 391 CFNCGKEGHIARNC 404
>AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-interacting RING| finger protein 1) Length = 360 Score = 33.9 bits (76), Expect(2) = 0.14 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 5/95 (5%) Frame = -3 Query: 564 IDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVI-----SPEEAKPVGGSSMEPSAVS 400 +DD + K C C +GH S CP+K V S ++ S + Sbjct: 100 MDDHYSQHCPKAIICTNCNANGHYKSQCPHKWKKVFCTLCNSKRHSRERCPSIWRSYLLK 159 Query: 399 VENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 295 ++ GD + CY CG AGH +C Sbjct: 160 TKDANQGDFDF------QTVFCYNCGNAGHFGDDC 188 Score = 31.6 bits (70), Expect = 3.3 Identities = 27/100 (27%), Positives = 34/100 (34%), Gaps = 1/100 (1%) Frame = -3 Query: 525 KCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVEN-KPSGDTSSAPPKKK 349 KC C GHL CP+ T + S P A+ N +G S P K Sbjct: 75 KCNNCSQRGHLKRNCPHVICTYCGFMDDH---YSQHCPKAIICTNCNANGHYKSQCPHKW 131 Query: 348 KRRTCYECGIAGHLSSECPNMAK*SWWTSCFLVVSALRSG 229 K+ C C H CP++ W S L G Sbjct: 132 KKVFCTLCNSKRHSRERCPSI-----WRSYLLKTKDANQG 166 Score = 21.2 bits (43), Expect(2) = 0.14 Identities = 8/19 (42%), Positives = 8/19 (42%) Frame = -2 Query: 700 CYECGIPGHLSSACPK*KC 644 C C GHL CP C Sbjct: 76 CNNCSQRGHLKRNCPHVIC 94
>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 519 Score = 36.2 bits (82), Expect = 0.14 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 +R+ C++CG SGH+ + CP+++A + +G +P V G T +APP Sbjct: 406 RRQGCWKCGKSGHIMANCPDRQAGFLG------LGPWGKKPRNFPVVPSSQGLTPTAPP 458
>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 1168 Score = 36.2 bits (82), Expect = 0.14 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -3 Query: 378 DTSSAPPKKKKRRTCYECGIAGHLSSEC 295 +TS + PKK +CY CG++GH + +C Sbjct: 1109 NTSGSGPKKNGNVSCYNCGVSGHYAQDC 1136 Score = 30.0 bits (66), Expect = 9.7 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = -3 Query: 570 NKIDDGSTSAPSKRRK--CYECGISGHLSSAC 481 N + + S S P K CY CG+SGH + C Sbjct: 1105 NVVANTSGSGPKKNGNVSCYNCGVSGHYAQDC 1136
>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 899 Score = 36.2 bits (82), Expect = 0.14 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -3 Query: 378 DTSSAPPKKKKRRTCYECGIAGHLSSEC 295 +TS + PKK +CY CG++GH + +C Sbjct: 840 NTSGSGPKKNGNVSCYNCGVSGHYAQDC 867 Score = 30.0 bits (66), Expect = 9.7 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = -3 Query: 570 NKIDDGSTSAPSKRRK--CYECGISGHLSSAC 481 N + + S S P K CY CG+SGH + C Sbjct: 836 NVVANTSGSGPKKNGNVSCYNCGVSGHYAQDC 867
>POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1549 Score = 36.2 bits (82), Expect = 0.14 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 12/91 (13%) Frame = -3 Query: 603 PKYAPYMASEQNKI-------DDGSTS----APSKRRKCYECGISGHLSSACPNKKATVI 457 P P+ A++Q K +G ++ AP +R+ C++CG GH+ + CP ++A + Sbjct: 374 PSPIPFAAAQQRKAIRYWNCGKEGHSARQCRAP-RRQGCWKCGKPGHIMANCPERQAGFL 432 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPSG-DTSS 367 VG + E S + + PSG DT+S Sbjct: 433 R------VGPTGKEASQLPRDPSPSGADTNS 457 Score = 30.8 bits (68), Expect = 5.7 Identities = 9/20 (45%), Positives = 16/20 (80%) Frame = -2 Query: 712 KRRTCYECGIPGHLSSACPK 653 +R+ C++CG PGH+ + CP+ Sbjct: 407 RRQGCWKCGKPGHIMANCPE 426 Score = 30.4 bits (67), Expect = 7.5 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Frame = -3 Query: 480 PNKKATVISPEEAKPVGGSSMEPSAVSVENKP-------SGDTSSAPPKKKKRRTCYECG 322 P +KA +++ E K G S P A + + K S+ + +R+ C++CG Sbjct: 357 PGQKARLMA-EALKEAMGPSPIPFAAAQQRKAIRYWNCGKEGHSARQCRAPRRQGCWKCG 415 Query: 321 IAGHLSSECP 292 GH+ + CP Sbjct: 416 KPGHIMANCP 425
>POL_HV1Z2 (P12499) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1435 Score = 31.2 bits (69), Expect(2) = 0.16 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 382 +R+ C++CG GH C ++A + + A P G + S + N P+ Sbjct: 410 RRKGCWKCGKEGHQLKDCTERQANFLREDLAFPQGKAGELSSEQTRANSPT 460 Score = 30.0 bits (66), Expect = 9.7 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -3 Query: 555 GSTSAPSKRRKCYECGISGHLSSAC--PNKK 469 G+ P K KC+ CG GH++ C P +K Sbjct: 382 GNFKGPRKTIKCFNCGKEGHIAKNCRAPRRK 412 Score = 23.5 bits (49), Expect(2) = 0.16 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH++ C Sbjct: 388 RKTIKCFNCGKEGHIAKNC 406
>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein| p2A; Core protein p2B; Core protein p10; Capsid protein p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)] Length = 701 Score = 35.8 bits (81), Expect = 0.18 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -3 Query: 591 PYMASEQNKIDDGSTSAPSKRRK-CYECGISGHLSSACPNKKATVISPEEAKPVGG 427 P + + N+ DG T + + R CY CG GH + CP K+ + S E + G Sbjct: 485 PLIMAVVNRERDGQTGSGGRARGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNG 540 Score = 33.5 bits (75), Expect = 0.88 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = -2 Query: 733 QPXQASKKRRTCYECGIPGHLSSACPK 653 Q + R CY CG PGH + CPK Sbjct: 498 QTGSGGRARGLCYTCGSPGHYQAQCPK 524 Score = 33.5 bits (75), Expect = 0.88 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -3 Query: 426 SSMEPSAVSVENKP-SGDTSSAPPKKKKRRTCYECGIAGHLSSECPNMAK 280 S+++P ++V N+ G T S + R CY CG GH ++CP K Sbjct: 481 SAIQPLIMAVVNRERDGQTGSGG---RARGLCYTCGSPGHYQAQCPKKRK 527
>AIR2_YEAST (Q12476) Protein AIR2 (Arginine methyltransferase-interacting RING| finger protein 2) Length = 344 Score = 35.8 bits (81), Expect = 0.18 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 7/126 (5%) Frame = -3 Query: 651 KSAXEVVSNHTQPFDEPKYAPYM-ASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPN 475 K A +N +Q K P++ S DD + K +C +C GH S CP+ Sbjct: 57 KEAAPKCNNCSQRGHLKKDCPHIICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPH 116 Query: 474 K----KATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRT--CYECGIAG 313 K + T+ ++ S+ + + V+ D A PK T CY CG G Sbjct: 117 KWKKVQCTLCKSKKHSKERCPSIWRAYILVD-----DNEKAKPKVLPFHTIYCYNCGGKG 171 Query: 312 HLSSEC 295 H +C Sbjct: 172 HFGDDC 177 Score = 31.6 bits (70), Expect = 3.3 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 522 CYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENK 388 CY CG GH C K+++ + E+ GS+ S +SVE K Sbjct: 164 CYNCGGKGHFGDDCKEKRSSRVPNED-----GSAFTGSNLSVELK 203 Score = 31.2 bits (69), Expect = 4.4 Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 1/105 (0%) Frame = -3 Query: 561 DDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVEN-KP 385 DD + KC C GHL CP+ + S A S P A+ Sbjct: 50 DDDKDAIKEAAPKCNNCSQRGHLKKDCPH---IICSYCGATDDHYSRHCPKAIQCSKCDE 106 Query: 384 SGDTSSAPPKKKKRRTCYECGIAGHLSSECPNMAK*SWWTSCFLV 250 G S P K K+ C C H CP++ W + LV Sbjct: 107 VGHYRSQCPHKWKKVQCTLCKSKKHSKERCPSI-----WRAYILV 146
>POL_HV2NZ (P05962) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1460 Score = 35.8 bits (81), Expect = 0.18 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 22/107 (20%) Frame = -3 Query: 603 PKYAPYMASEQNKI-------DDGST----SAPSKRRKCYECGISGHLSSACPNKKATVI 457 P P+ A++Q K +G + SAP +R+ C++CG SGH+ + CP+++A + Sbjct: 372 PAPIPFAAAQQRKTFKCWNCGKEGHSARQWSAP-RRQGCWKCGKSGHVMANCPDRQAGFL 430 Query: 456 S-----------PEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKK 349 P P G ++ + + + P+G+ +A K K Sbjct: 431 RDWPLGKEGPQLPRGPSPAGANT-NSTPIGSSSGPTGEIYAARKKAK 476
>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 32.0 bits (71), Expect(2) = 0.22 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 18/81 (22%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS-----------------PE-EAKPVGGSSMEPS 409 +++ C++CG GH C ++A + PE A P S EP+ Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPFLQSRPEPT 467 Query: 408 AVSVENKPSGDTSSAPPKKKK 346 A E+ SG ++ PP+K++ Sbjct: 468 APPEESFRSGVETTTPPQKQE 488 Score = 26.2 bits (56), Expect(2) = 2.1 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%) Frame = -3 Query: 525 KCYECGISGHLSSAC--PNKK 469 KC+ CG GH++ C P KK Sbjct: 390 KCFNCGKEGHIARNCKAPRKK 410 Score = 24.6 bits (52), Expect(2) = 2.1 Identities = 7/21 (33%), Positives = 13/21 (61%) Frame = -3 Query: 357 KKKKRRTCYECGIAGHLSSEC 295 K +++ C++CG GH +C Sbjct: 405 KAPRKKGCWKCGKEGHQMKDC 425 Score = 22.3 bits (46), Expect(2) = 0.22 Identities = 6/14 (42%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GH++ C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 503 Score = 30.8 bits (68), Expect(2) = 0.22 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +++ C++CG GH C ++A + P G S EP+A E+ G+ Sbjct: 408 RKKGCWKCGKEGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRFGEE 467 Query: 372 SSAPPKKKKRR 340 ++ P +K++++ Sbjct: 468 TATPSQKQEQK 478 Score = 23.5 bits (49), Expect(2) = 0.22 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH++ C Sbjct: 386 RKNVKCFNCGKEGHIARNC 404
>GAG_SIVS4 (P12496) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 507 Score = 35.4 bits (80), Expect = 0.23 Identities = 16/60 (26%), Positives = 31/60 (51%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 355 +R+ C++CG +GH+ + CP ++A + +G +P + P G +APP+ Sbjct: 411 RRQGCWKCGKTGHVMAKCPERQAGFLG------LGPWGKKPRNFPMAQMPQGLIPTAPPE 464
>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 35.4 bits (80), Expect = 0.23 Identities = 18/66 (27%), Positives = 33/66 (50%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 355 +R+ C++CG +GH+ + CP ++A + P+G + P N DT+S P + Sbjct: 407 RRQGCWKCGKAGHIMAKCPERQAGFL---RVGPMGKEA--PQFPCGPNPAGADTNSTPDR 461 Query: 354 KKKRRT 337 + T Sbjct: 462 PSRGPT 467 Score = 30.4 bits (67), Expect = 7.5 Identities = 9/19 (47%), Positives = 16/19 (84%) Frame = -3 Query: 348 KRRTCYECGIAGHLSSECP 292 +R+ C++CG AGH+ ++CP Sbjct: 407 RRQGCWKCGKAGHIMAKCP 425
>GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 32.0 bits (71), Expect(2) = 0.28 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 18/81 (22%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS-----------------PE-EAKPVGGSSMEPS 409 +++ C++CG GH C ++A + PE A P S EP+ Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPFLQSRPEPT 467 Query: 408 AVSVENKPSGDTSSAPPKKKK 346 A E+ SG ++ PP+K++ Sbjct: 468 APPEESFRSGVETTTPPQKQE 488 Score = 25.4 bits (54), Expect(2) = 7.3 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSAC--PNKK 469 K KC+ CG GH + C P KK Sbjct: 387 KMVKCFNCGKEGHTARNCRAPRKK 410 Score = 23.5 bits (49), Expect(2) = 7.3 Identities = 6/18 (33%), Positives = 12/18 (66%) Frame = -3 Query: 348 KRRTCYECGIAGHLSSEC 295 +++ C++CG GH +C Sbjct: 408 RKKGCWKCGKEGHQMKDC 425 Score = 21.9 bits (45), Expect(2) = 0.28 Identities = 7/19 (36%), Positives = 10/19 (52%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH + C Sbjct: 386 RKMVKCFNCGKEGHTARNC 404
>GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 32.0 bits (71), Expect(2) = 0.28 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 18/81 (22%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS-----------------PE-EAKPVGGSSMEPS 409 +++ C++CG GH C ++A + PE A P S EP+ Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPFLQSRPEPT 467 Query: 408 AVSVENKPSGDTSSAPPKKKK 346 A E+ SG ++ PP+K++ Sbjct: 468 APPEESFRSGVETTTPPQKQE 488 Score = 25.4 bits (54), Expect(2) = 7.3 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSAC--PNKK 469 K KC+ CG GH + C P KK Sbjct: 387 KMVKCFNCGKEGHTARNCRAPRKK 410 Score = 23.5 bits (49), Expect(2) = 7.3 Identities = 6/18 (33%), Positives = 12/18 (66%) Frame = -3 Query: 348 KRRTCYECGIAGHLSSEC 295 +++ C++CG GH +C Sbjct: 408 RKKGCWKCGKEGHQMKDC 425 Score = 21.9 bits (45), Expect(2) = 0.28 Identities = 7/19 (36%), Positives = 10/19 (52%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH + C Sbjct: 386 RKMVKCFNCGKEGHTARNC 404
>GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 32.7 bits (73), Expect(2) = 0.28 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +++ C++CG GH C ++A + P G S EP+A E+ SG Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVE 467 Query: 372 SSAPPKKKK 346 ++ PP+K++ Sbjct: 468 TTTPPQKQE 476 Score = 25.0 bits (53), Expect(2) = 9.4 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%) Frame = -3 Query: 525 KCYECGISGHLSSAC--PNKK 469 KC+ CG GH + C P KK Sbjct: 390 KCFNCGKEGHTARNCRAPRKK 410 Score = 23.5 bits (49), Expect(2) = 9.4 Identities = 6/18 (33%), Positives = 12/18 (66%) Frame = -3 Query: 348 KRRTCYECGIAGHLSSEC 295 +++ C++CG GH +C Sbjct: 408 RKKGCWKCGKEGHQMKDC 425 Score = 21.2 bits (43), Expect(2) = 0.28 Identities = 6/14 (42%), Positives = 8/14 (57%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GH + C Sbjct: 391 CFNCGKEGHTARNC 404
>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 30.8 bits (68), Expect(2) = 0.28 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +++ C++CG GH C ++A + P G S EP+A E+ G+ Sbjct: 408 RKKGCWKCGKEGHQMKDCNERQANFLGKIWPSSKGRPGNFLQSRPEPTAPPEESFRFGEE 467 Query: 372 SSAPPKKKKRR 340 ++ P +K++ R Sbjct: 468 TTTPSQKQEPR 478 Score = 23.1 bits (48), Expect(2) = 0.28 Identities = 7/14 (50%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GHL+ C Sbjct: 391 CFNCGKEGHLARNC 404
>POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 30.0 bits (66), Expect(2) = 0.34 Identities = 13/50 (26%), Positives = 24/50 (48%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKP 385 +++ C++CG GH C ++A + + A P G + S + N P Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLREDLAFPQGKARKFSSEQTRANSP 457 Score = 23.5 bits (49), Expect(2) = 0.34 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH++ C Sbjct: 386 RKTVKCFNCGKEGHIAKNC 404
>POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 30.0 bits (66), Expect(2) = 0.34 Identities = 13/51 (25%), Positives = 25/51 (49%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 382 +++ C++CG GH C ++A + + A P G + S + N P+ Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLREDLAFPQGKAREFSSEQTRANSPT 458 Score = 23.5 bits (49), Expect(2) = 0.34 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH++ C Sbjct: 386 RKTVKCFNCGKEGHIAKNC 404
>POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1433 Score = 30.0 bits (66), Expect(2) = 0.34 Identities = 13/51 (25%), Positives = 25/51 (49%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 382 +++ C++CG GH C ++A + + A P G + S + N P+ Sbjct: 407 RKKGCWKCGREGHQMKDCTERQANFLREDLAFPQGKAREFSSEQTRANSPT 457 Score = 23.5 bits (49), Expect(2) = 0.34 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH++ C Sbjct: 385 RKTVKCFNCGKEGHIAKNC 403
>GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 506 Score = 30.8 bits (68), Expect(2) = 0.36 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVG------GSSMEPSAVSVENKPSGDT 373 ++R C++CG GH C ++A + G S EP+A E+ G+ Sbjct: 411 RKRGCWKCGKEGHQMKDCTERQANFLGKIWPSCKGRPGNFPQSRTEPTAPPEESFRFGEE 470 Query: 372 SSAPPKKKKRR 340 ++ P +K++++ Sbjct: 471 TTTPYQKQEKK 481 Score = 22.7 bits (47), Expect(2) = 0.36 Identities = 6/14 (42%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GH++ C Sbjct: 394 CFNCGKEGHIAKNC 407
>GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 30.0 bits (66), Expect(2) = 0.36 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 6/69 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +++ C++CG GH C ++A + P G S EP+A E+ G+ Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEE 467 Query: 372 SSAPPKKKK 346 ++ P +K++ Sbjct: 468 TTTPSQKQE 476 Score = 23.5 bits (49), Expect(2) = 0.36 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH++ C Sbjct: 386 RKTVKCFNCGKEGHIAKNC 404
>GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 492 Score = 28.9 bits (63), Expect(2) = 0.36 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +++ C++CG GH C ++A + P G S EP+A E G+ Sbjct: 402 RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSNKGRPGNFPQSRPEPTAPPAEIFGMGEK 461 Query: 372 SSAPPKKK 349 ++P K++ Sbjct: 462 MTSPAKQE 469 Score = 24.6 bits (52), Expect(2) = 0.36 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -2 Query: 712 KRRTCYECGIPGHLSSAC 659 +R C+ CG GHL+ C Sbjct: 381 RRIKCFNCGKEGHLAKNC 398
>COAT_CERV (P05399) Probable coat protein| Length = 494 Score = 34.7 bits (78), Expect = 0.40 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 360 PKKKKRRTCYECGIAGHLSSECPN 289 PK KK C+ C I GH ++ECPN Sbjct: 412 PKGKKTCRCWVCNIEGHYANECPN 435 Score = 31.2 bits (69), Expect = 4.4 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 15/63 (23%) Frame = -3 Query: 606 EPKYAPY-MASEQNKIDDGSTSAPSKRR--------------KCYECGISGHLSSACPNK 472 +PKY Y + ++ K G P ++ +C+ C I GH ++ CPN+ Sbjct: 377 KPKYTKYKVIRKKKKFSPGKYFKPKDKKSEKAKYCPKGKKTCRCWVCNIEGHYANECPNR 436 Query: 471 KAT 463 + + Sbjct: 437 QTS 439
>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 34.7 bits (78), Expect = 0.40 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 3/104 (2%) Frame = -3 Query: 627 NHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKK---ATVI 457 N+ P +P S+Q+ + + ++PS+ +C C + H+S P K+ A Sbjct: 68 NNNTSVTTPTLSP---SQQSLPTELNVTSPSEE-ECGPCTDTAHVSLITPTKRSCGADSQ 123 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYEC 325 S EA PV + VEN P S K+K RR C++C Sbjct: 124 SESEASPVKRPRL------VEN-PERPEESGRSKQKSRRRCFQC 160
>POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1463 Score = 34.7 bits (78), Expect = 0.40 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 14/97 (14%) Frame = -3 Query: 603 PKYAPYMASEQNKI-------DDGSTS----APSKRRKCYECGISGHLSSACPNKKATVI 457 P P+ A++Q K+ +G ++ AP +R+ C++CG +GH+ + CP ++A + Sbjct: 375 PPPIPFAAAQQRKVIRCWNCGKEGHSARQCRAP-RRQGCWKCGKTGHVMAKCPERQAGFL 433 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPS---GDTSSAPPK 355 SM A + PS DT+S P + Sbjct: 434 R--------DGSMGKEAPQLPRGPSSSGADTNSTPSR 462
>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1438 Score = 29.6 bits (65), Expect(2) = 0.43 Identities = 13/51 (25%), Positives = 25/51 (49%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 382 +++ C++CG GH C ++A + + A G + PS + N P+ Sbjct: 408 RKKGCWKCGKEGHQMKECTERQANFLREDLAFLQGKAREFPSEQTRANSPT 458 Score = 23.5 bits (49), Expect(2) = 0.43 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH++ C Sbjct: 386 RKNVKCFNCGKEGHIARNC 404
>ZCHC3_HUMAN (Q9NUD5) Zinc finger CCHC domain-containing protein 3| Length = 404 Score = 27.7 bits (60), Expect(2) = 0.47 Identities = 8/21 (38%), Positives = 15/21 (71%) Frame = -2 Query: 706 RTCYECGIPGHLSSACPK*KC 644 +TC++CG H+S +C + +C Sbjct: 334 KTCFKCGSRTHMSGSCTQDRC 354 Score = 25.4 bits (54), Expect(2) = 0.47 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = -3 Query: 525 KCYECGISGHLSSAC 481 +C+ CG GHLS C Sbjct: 353 RCFRCGEEGHLSPYC 367
>POL_HV1ND (P18802) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1431 Score = 30.4 bits (67), Expect(2) = 0.56 Identities = 13/51 (25%), Positives = 25/51 (49%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 382 +++ C++CG GH C ++A + + A P G + S + N P+ Sbjct: 406 RKKGCWKCGREGHQMKDCTERQANFLREDLAFPQGKAGEFSSEQTRANSPT 456 Score = 30.0 bits (66), Expect = 9.7 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = -3 Query: 555 GSTSAPSKRRKCYECGISGHLSSAC--PNKK 469 G+ P K KC+ CG GH + C P KK Sbjct: 378 GNFKGPRKSIKCFNCGKEGHTAKNCRAPRKK 408 Score = 22.3 bits (46), Expect(2) = 0.56 Identities = 7/19 (36%), Positives = 10/19 (52%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH + C Sbjct: 384 RKSIKCFNCGKEGHTAKNC 402
>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein| p25; Core protein p16] Length = 508 Score = 31.6 bits (70), Expect = 3.3 Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 4/101 (3%) Frame = -3 Query: 585 MASEQNKID----DGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSM 418 M Q + D G + P ++ KC+ CG GHL+ C Sbjct: 377 MVQNQGRADVFFQKGQGAGPKRKIKCFNCGKEGHLARNC--------------------- 415 Query: 417 EPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 295 K +R+ C+ CG GH +C Sbjct: 416 --------------------KAPRRKGCWRCGQEGHQMKDC 436 Score = 27.7 bits (60), Expect(2) = 0.60 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 17/80 (21%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVEN------ 391 +R+ C+ CG GH C ++ + P + G + EP+A +E+ Sbjct: 419 RRKGCWRCGQEGHQMKDCTGRQVNFLGKGWPSRSGRPGNFVQNRTEPTAPPIESYGYQEE 478 Query: 390 -----KPSGDTSSAPPKKKK 346 K G++S PP K Sbjct: 479 EKSQEKKEGESSLYPPTSLK 498 Score = 25.0 bits (53), Expect(2) = 0.60 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 K++ C+ CG GHL+ C Sbjct: 397 KRKIKCFNCGKEGHLARNC 415
>GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 449 Score = 26.9 bits (58), Expect(2) = 0.60 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -2 Query: 733 QPXQASKKRRTCYECGIPGHLSSACPK*K 647 Q Q R C+ C PGHL+ C + K Sbjct: 366 QTVQTKGPRLVCFNCKKPGHLARQCKEAK 394 Score = 25.8 bits (55), Expect(2) = 0.60 Identities = 15/61 (24%), Positives = 26/61 (42%) Frame = -3 Query: 528 RKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKK 349 ++C CG GHL++ C + + G+ A + N+ SAPP ++ Sbjct: 394 KRCNNCGKPGHLAANC---------WQGGRKTSGNEKVGRAAAPVNQVQQIVPSAPPMEE 444 Query: 348 K 346 K Sbjct: 445 K 445 Score = 25.0 bits (53), Expect(2) = 9.4 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = -3 Query: 351 KKRRTCYECGIAGHLSSEC 295 K+ + C CG GHL++ C Sbjct: 391 KEAKRCNNCGKPGHLAANC 409 Score = 23.5 bits (49), Expect(2) = 9.4 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Frame = -3 Query: 618 QPFDEPKYAPYMASEQ-NKIDDGSTSAPSKRRKCYECGISGHLSSACPNKK 469 Q P Y + +E ++ T P R C+ C GHL+ C K Sbjct: 346 QEVGSPGYKMQLLAEALTRVQTVQTKGP--RLVCFNCKKPGHLARQCKEAK 394
>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 33.9 bits (76), Expect = 0.67 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 3/104 (2%) Frame = -3 Query: 627 NHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKK---ATVI 457 N+ P +P S+Q+ + + ++PS +C C + H+S P K+ A Sbjct: 68 NNNTSVTTPTLSP---SQQSLPTELNVTSPSTE-ECGPCTDTAHVSLITPTKRSCGADSQ 123 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYEC 325 S EA PV + VEN P S K+K RR C++C Sbjct: 124 SENEASPVKRPRL------VEN-PERPEESGRSKQKSRRRCFQC 160
>COAT_CAMVD (P03544) Coat protein| Length = 490 Score = 33.9 bits (76), Expect = 0.67 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 360 PKKKKRRTCYECGIAGHLSSECPN 289 PK KK C+ C I GH ++ECPN Sbjct: 405 PKGKKDCRCWICNIEGHYANECPN 428
>COAT_CAMVN (Q00956) Coat protein| Length = 488 Score = 33.9 bits (76), Expect = 0.67 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 360 PKKKKRRTCYECGIAGHLSSECPN 289 PK KK C+ C I GH ++ECPN Sbjct: 404 PKGKKDCRCWICNIEGHYANECPN 427
>COAT_CAMVC (P03543) Coat protein| Length = 488 Score = 33.9 bits (76), Expect = 0.67 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 360 PKKKKRRTCYECGIAGHLSSECPN 289 PK KK C+ C I GH ++ECPN Sbjct: 404 PKGKKDCRCWICNIEGHYANECPN 427
>COAT_CAMVS (P03542) Coat protein| Length = 489 Score = 33.9 bits (76), Expect = 0.67 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 360 PKKKKRRTCYECGIAGHLSSECPN 289 PK KK C+ C I GH ++ECPN Sbjct: 406 PKGKKDCRCWICNIEGHYANECPN 429
>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 549 Score = 30.0 bits (66), Expect(2) = 0.77 Identities = 13/51 (25%), Positives = 25/51 (49%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 382 +++ C++CG GH C ++A + + A P G + S + N P+ Sbjct: 408 RKKGCWKCGREGHQMKDCTERQANFLREDLAFPQGKAREFSSEQTRANSPT 458 Score = 22.3 bits (46), Expect(2) = 0.77 Identities = 6/14 (42%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GH++ C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 519 Score = 32.7 bits (73), Expect = 1.5 Identities = 21/93 (22%), Positives = 28/93 (30%) Frame = -3 Query: 573 QNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVE 394 QN + G +CY CG GH+ CP Sbjct: 382 QNMVQQGGPKRQRPPLRCYNCGKFGHMQRQCPE--------------------------- 414 Query: 393 NKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 295 P+K K C +CG GHL+ +C Sbjct: 415 -----------PRKTK---CLKCGKLGHLAKDC 433 Score = 30.0 bits (66), Expect = 9.7 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = -3 Query: 363 PPKKKKRRTCYECGIAGHLSSECPNMAK 280 P +++ CY CG GH+ +CP K Sbjct: 390 PKRQRPPLRCYNCGKFGHMQRQCPEPRK 417 Score = 26.6 bits (57), Expect(2) = 0.77 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 6/67 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNK------KATVISPEEAKPVGGSSMEPSAVSVENKPSGDT 373 ++ KC +CG GHL+ C + + + P EPSA PSG T Sbjct: 416 RKTKCLKCGKLGHLAKDCRGQVNFLGYGRWMGAKPRNFPAATLGAEPSA---PPPPSGTT 472 Query: 372 SSAPPKK 352 P KK Sbjct: 473 PYDPAKK 479 Score = 25.8 bits (55), Expect(2) = 0.77 Identities = 8/16 (50%), Positives = 10/16 (62%) Frame = -2 Query: 700 CYECGIPGHLSSACPK 653 CY CG GH+ CP+ Sbjct: 399 CYNCGKFGHMQRQCPE 414
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 26.6 bits (57), Expect(2) = 0.77 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +++ C++CG GH C ++A + P G S EP+A E+ G+ Sbjct: 414 RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFGFGEE 473 Query: 372 SSAPPKKKKR 343 K++++ Sbjct: 474 IKPSQKQEQK 483 Score = 25.8 bits (55), Expect(2) = 0.77 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +KR C+ CG GHL+ C Sbjct: 392 QKRIKCFNCGKEGHLARNC 410
>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1464 Score = 33.5 bits (75), Expect = 0.88 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 13/71 (18%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKA------TVISPEEAKPVGGSSMEPSAVSVENKPS--- 382 +R+ C++CG +GH+ S CP ++A T+ P S+ + ++PS Sbjct: 406 RRQGCWKCGKTGHIMSKCPERQAGFLRVRTLGKEASQLPHDPSASGSDTICTPDEPSRGH 465 Query: 381 ----GDTSSAP 361 GDT AP Sbjct: 466 DTSGGDTICAP 476 Score = 30.0 bits (66), Expect = 9.7 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = -3 Query: 348 KRRTCYECGIAGHLSSECP 292 +R+ C++CG GH+ S+CP Sbjct: 406 RRQGCWKCGKTGHIMSKCP 424
>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 666 Score = 33.5 bits (75), Expect = 0.88 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 2/80 (2%) Frame = -3 Query: 528 RKCYECGISGHLSSACP--NKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 355 +KCY CG GHL +CP NK+ + AK KPSG Sbjct: 542 KKCYNCGQIGHLKRSCPVLNKQNIINQAITAK--------------NKKPSG-------- 579 Query: 354 KKKRRTCYECGIAGHLSSEC 295 C +CG H +++C Sbjct: 580 -----LCPKCGKGKHWANQC 594
>CPSF4_MOUSE (Q8BQZ5) Cleavage and polyadenylation specificity factor, 30 kDa| subunit (CPSF 30 kDa subunit) (Clipper homolog) (Clipper/CPSF 30K) Length = 211 Score = 33.5 bits (75), Expect = 0.88 Identities = 13/53 (24%), Positives = 26/53 (49%) Frame = -3 Query: 453 PEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 295 P++ +P + P + V + + P+ ++ TCY+CG GH ++ C Sbjct: 150 PQQTQPP--TKRAPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYANRC 200
>GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 501 Score = 28.5 bits (62), Expect(2) = 0.99 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 6/69 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +++ C+ CG GH C ++A + P G S EP+A E+ G+ Sbjct: 410 RKKGCWRCGREGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRFGEE 469 Query: 372 SSAPPKKKK 346 + P +K++ Sbjct: 470 KTTPSQKQE 478 Score = 23.5 bits (49), Expect(2) = 0.99 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH++ C Sbjct: 388 RKTVKCFNCGKEGHIAKNC 406
>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I| Length = 218 Score = 30.4 bits (67), Expect(2) = 1.1 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = -3 Query: 579 SEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGG 427 S+++ ++ S P K KC+ C +GHLS C +P+ P GG Sbjct: 107 SKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQ------NPKGLYPKGG 151 Score = 21.6 bits (44), Expect(2) = 1.1 Identities = 7/18 (38%), Positives = 10/18 (55%) Frame = -2 Query: 700 CYECGIPGHLSSACPK*K 647 C+ C GH+ CP+ K Sbjct: 79 CFACRQQGHIVQDCPEAK 96
>GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 510 Score = 33.1 bits (74), Expect = 1.1 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 12/96 (12%) Frame = -3 Query: 606 EPKYAPYMASEQ---------NKIDDGSTSAPSK---RRKCYECGISGHLSSACPNKKAT 463 +P P+ A++Q N +G T+ K R+ C++CG GH + CP ++ Sbjct: 374 QPGPLPFAAAQQQGRRTVKCWNCGKEGHTAKQCKAPRRQGCWKCGKPGHQMAKCPERQVG 433 Query: 462 VISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 355 + G +P + P G T +APP+ Sbjct: 434 FLG------FGPWGKKPRNFPMAQIPQGLTPTAPPE 463
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 33.1 bits (74), Expect = 1.1 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = -3 Query: 462 VISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSE 298 + +PE+ G + A S P ++++PPK KKR T E G + HL ++ Sbjct: 3484 ISAPEKTYKGGSLGCQTEADSDTQSPQYLSATSPPKDKKRPTPLEIGYSSHLRAD 3538
>GAG_SIVM1 (P05894) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 506 Score = 33.1 bits (74), Expect = 1.1 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 355 +R+ C++CG H+ + CPN++A + +G +P + G T +APP+ Sbjct: 410 RRQGCWKCGKMDHVMAKCPNRQAGFLG------LGPWGKKPRNFPMAQVHQGLTPTAPPE 463 Query: 354 K 352 + Sbjct: 464 E 464
>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 33.1 bits (74), Expect = 1.1 Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 10/76 (13%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVI--------SPE--EAKPVGGSSMEPSAVSVENKP 385 +R+ C++CG SGH+ + CP+++A + +P+ G++ + + P Sbjct: 406 RRQGCWKCGKSGHIMANCPDRQAGFLRAWTMGKEAPQLPRGPKFAGANTNSTPNGSSSGP 465 Query: 384 SGDTSSAPPKKKKRRT 337 +G+ +A K ++ T Sbjct: 466 TGEVHAAREKTERAET 481
>GAG_IPHA (P04023) Retrovirus-related Gag polyprotein [Contains: Protease (EC| 3.4.23.-)] Length = 572 Score = 33.1 bits (74), Expect = 1.1 Identities = 19/81 (23%), Positives = 26/81 (32%) Frame = -3 Query: 537 SKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPP 358 S R+ C+ CG GHL C AP Sbjct: 444 SNRKACFNCGRMGHLKKDC-------------------------------------QAPE 466 Query: 357 KKKKRRTCYECGIAGHLSSEC 295 + ++ + CY CG H +SEC Sbjct: 467 RTRESKLCYRCGKGYHRASEC 487 Score = 25.4 bits (54), Expect(2) = 9.2 Identities = 8/17 (47%), Positives = 10/17 (58%) Frame = -2 Query: 709 RRTCYECGIPGHLSSAC 659 R+ C+ CG GHL C Sbjct: 446 RKACFNCGRMGHLKKDC 462 Score = 23.1 bits (48), Expect(2) = 9.2 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 3/24 (12%) Frame = -3 Query: 543 APSKRRK---CYECGISGHLSSAC 481 AP + R+ CY CG H +S C Sbjct: 464 APERTRESKLCYRCGKGYHRASEC 487
>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1463 Score = 32.7 bits (73), Expect = 1.5 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 17/97 (17%) Frame = -3 Query: 603 PKYAPYMASEQNKI-------DDGSTS----APSKRRKCYECGISGHLSSACPNKKATVI 457 P P+ A++Q K +G ++ AP +R+ C++CG GH+ + CP+++A + Sbjct: 374 PAPIPFAAAQQRKAFKCWNCGKEGHSARQCRAP-RRQGCWKCGKPGHIMTNCPDRQAGFL 432 Query: 456 SPEEAKPVGGSSME----PSAVSVE--NKPSGDTSSA 364 P+G + + PS+ + + PSG +S + Sbjct: 433 ---RTGPLGKEAPQLPRGPSSAGADTNSTPSGSSSGS 466 Score = 30.8 bits (68), Expect = 5.7 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 7/71 (9%) Frame = -3 Query: 480 PNKKATVISPEEAKPVGGSSMEPSAVSVENKP-------SGDTSSAPPKKKKRRTCYECG 322 P +KA +++ E K V G + P A + + K S+ + +R+ C++CG Sbjct: 357 PGQKARLMA-EALKEVIGPAPIPFAAAQQRKAFKCWNCGKEGHSARQCRAPRRQGCWKCG 415 Query: 321 IAGHLSSECPN 289 GH+ + CP+ Sbjct: 416 KPGHIMTNCPD 426 Score = 30.4 bits (67), Expect = 7.5 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = -2 Query: 712 KRRTCYECGIPGHLSSACP 656 +R+ C++CG PGH+ + CP Sbjct: 407 RRQGCWKCGKPGHIMTNCP 425
>POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1435 Score = 26.6 bits (57), Expect(2) = 6.7 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPN--KKATVISPEEAKPVGGSSMEPSAVSVENKPS 382 +++ C++CG GH C N ++A + A P G + S + N P+ Sbjct: 408 RKKGCWKCGKEGHQMKDCTNEGRQANFLRENLAFPQGKARELSSEQTRANSPT 460 Score = 25.8 bits (55), Expect(2) = 1.5 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%) Frame = -3 Query: 525 KCYECGISGHLSSAC--PNKK 469 KC+ CG GH++ C P KK Sbjct: 390 KCFNCGKVGHIAKNCRAPRKK 410 Score = 25.4 bits (54), Expect(2) = 1.5 Identities = 7/20 (35%), Positives = 13/20 (65%) Frame = -3 Query: 348 KRRTCYECGIAGHLSSECPN 289 +++ C++CG GH +C N Sbjct: 408 RKKGCWKCGKEGHQMKDCTN 427 Score = 22.3 bits (46), Expect(2) = 6.7 Identities = 6/14 (42%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GH++ C Sbjct: 391 CFNCGKVGHIAKNC 404
>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 28.9 bits (63), Expect(2) = 1.6 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 18/81 (22%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS-----------------PE-EAKPVGGSSMEPS 409 +++ C++CG GH C ++A + PE A P S EP+ Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPFLQSRPEPT 467 Query: 408 AVSVENKPSGDTSSAPPKKKK 346 A E+ SG ++ P +K++ Sbjct: 468 APPEESFRSGVETTTPSQKQE 488 Score = 22.3 bits (46), Expect(2) = 1.6 Identities = 6/14 (42%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GH++ C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_HV1Z2 (P12495) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 500 Score = 30.0 bits (66), Expect = 9.7 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -3 Query: 555 GSTSAPSKRRKCYECGISGHLSSAC--PNKK 469 G+ P K KC+ CG GH++ C P +K Sbjct: 382 GNFKGPRKTIKCFNCGKEGHIAKNCRAPRRK 412 Score = 27.7 bits (60), Expect(2) = 1.6 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +R+ C++CG GH C ++A + P G S EP+A E+ G+ Sbjct: 410 RRKGCWKCGKEGHQLKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFGFGEE 469 Query: 372 SSAPPKKKKR 343 + K++++ Sbjct: 470 ITPSQKQEQK 479 Score = 23.5 bits (49), Expect(2) = 1.6 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH++ C Sbjct: 388 RKTIKCFNCGKEGHIAKNC 406
>GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 500 Score = 25.8 bits (55), Expect(2) = 1.6 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%) Frame = -3 Query: 525 KCYECGISGHLSSAC--PNKK 469 KC+ CG GH++ C P KK Sbjct: 390 KCFNCGKVGHIAKNCRAPRKK 410 Score = 25.4 bits (54), Expect(2) = 1.6 Identities = 7/20 (35%), Positives = 13/20 (65%) Frame = -3 Query: 348 KRRTCYECGIAGHLSSECPN 289 +++ C++CG GH +C N Sbjct: 408 RKKGCWKCGKEGHQMKDCTN 427
>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 27.3 bits (59), Expect(2) = 4.1 Identities = 17/79 (21%), Positives = 31/79 (39%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 355 +++ C++CG GH C ++A + + A G + S + N P+ + Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLREDLAFLQGKAREFSSEQTRANSPTISSEQTRAN 467 Query: 354 KKKRRTCYECGIAGHLSSE 298 RR G + SE Sbjct: 468 SPTRRELQVWGRDNNSPSE 486 Score = 26.2 bits (56), Expect(2) = 1.9 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%) Frame = -3 Query: 525 KCYECGISGHLSSAC--PNKK 469 KC+ CG GH++ C P KK Sbjct: 390 KCFNCGKEGHIARNCKAPRKK 410 Score = 24.6 bits (52), Expect(2) = 1.9 Identities = 7/21 (33%), Positives = 13/21 (61%) Frame = -3 Query: 357 KKKKRRTCYECGIAGHLSSEC 295 K +++ C++CG GH +C Sbjct: 405 KAPRKKGCWKCGKEGHQMKDC 425 Score = 22.3 bits (46), Expect(2) = 4.1 Identities = 6/14 (42%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GH++ C Sbjct: 391 CFNCGKEGHIARNC 404
>POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1427 Score = 26.2 bits (56), Expect(2) = 1.9 Identities = 12/51 (23%), Positives = 23/51 (45%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 382 +++ C++CG GH C ++A + A G + S + N P+ Sbjct: 402 RKKGCWKCGKEGHQMKDCTERQANFLRENLAFQQGEAREFSSEQTRANSPT 452 Score = 24.6 bits (52), Expect(2) = 1.9 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -2 Query: 712 KRRTCYECGIPGHLSSAC 659 +R C+ CG GHL+ C Sbjct: 381 RRIKCFNCGKEGHLAKNC 398
>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 32.3 bits (72), Expect = 2.0 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 3/104 (2%) Frame = -3 Query: 627 NHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVI--- 457 N+ P +P S+Q + + ++PSK +C C + H+S P K++ Sbjct: 68 NNNTSITTPTLSP---SQQPLPTELNVTSPSKE-ECGPCTDTAHVSLITPTKRSCGTDSQ 123 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYEC 325 S EA PV + +EN + +S K+K RR C++C Sbjct: 124 SENEASPVKRPRL------LENTERSEETSRS-KQKSRRRCFQC 160
>CPSF4_HUMAN (O95639) Cleavage and polyadenylation specificity factor, 30 kDa| subunit (CPSF 30 kDa subunit) (NS1 effector domain-binding protein 1) (Neb-1) (No arches homolog) Length = 269 Score = 32.3 bits (72), Expect = 2.0 Identities = 11/40 (27%), Positives = 20/40 (50%) Frame = -3 Query: 414 PSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 295 P + V + + P+ ++ TCY+CG GH ++ C Sbjct: 219 PQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYANRC 258
>GAG_SIVMK (P05893) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 506 Score = 32.3 bits (72), Expect = 2.0 Identities = 15/60 (25%), Positives = 31/60 (51%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 355 +R++C++CG H+ + CP+++A + +G +P + G T +APP+ Sbjct: 410 RRQRCWKCGKMDHVMAKCPDRQAGFLG------LGPWGKKPRNFPMAQVHQGLTPTAPPE 463
>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog| Length = 226 Score = 32.0 bits (71), Expect = 2.6 Identities = 21/78 (26%), Positives = 36/78 (46%) Frame = -3 Query: 552 STSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDT 373 + +PSK C C S H+S P+K++ S +++ P + ++P + Sbjct: 89 NVDSPSKE-DCGPCTDSAHVSLTTPSKRSCD-SDSQSEDDTSPMKRPRLLDSGDRPDNSS 146 Query: 372 SSAPPKKKKRRTCYECGI 319 S K+K RR C+ C I Sbjct: 147 RS---KQKSRRRCFRCQI 161
>ZN398_HUMAN (Q8TD17) Zinc finger protein 398 (Zinc finger DNA-binding protein| p52/p71) Length = 642 Score = 32.0 bits (71), Expect = 2.6 Identities = 29/94 (30%), Positives = 40/94 (42%) Frame = +3 Query: 156 LSKLSHDHASEEPFPLLHRRKFFVRPNEGH*LPKSNWSTMIIWPCWGILRRDDQLCRIHS 335 LS S DHASE P H + F P+ + + ST +PC +R R+ S Sbjct: 385 LSSTSQDHASETPPTCPHCARTFTHPSRLTYHLRVHNSTERPFPCPDCPKRFADQARLTS 444 Query: 336 TSFSSFSLEAPSLCRH*VCSQQKQLKVPCLSHQQ 437 + S E P C C + LK+ L HQ+ Sbjct: 445 HRRAHAS-ERPFRCAQ--CGRSFSLKISLLLHQR 475
>ZCH14_MOUSE (Q8VIG0) Zinc finger CCHC domain-containing protein 14 (BDG-29)| Length = 956 Score = 32.0 bits (71), Expect = 2.6 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -3 Query: 381 GDTSSAPPKKKKRRTCYECGIAGHLSSEC 295 G T+ + KK +CY CG GH + +C Sbjct: 900 GSTNGSSHKKSGNLSCYNCGATGHRAQDC 928
>MARCS_MOUSE (P26645) Myristoylated alanine-rich C-kinase substrate (MARCKS)| Length = 308 Score = 31.6 bits (70), Expect = 3.3 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Frame = -3 Query: 582 ASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEE-----AKPVGGSSM 418 A+++ + GS + P+ K E + + +K+A P E A+ G S+ Sbjct: 65 AADKEEPASGSAATPAAAEKD-EAAAATEPGAGAADKEAAEAEPAEPSSPAAEAEGASAS 123 Query: 417 EPSAVSVENKPSGDTSSAPPKKKKRRTCYE 328 S+ E+ + SS PKKKK+R ++ Sbjct: 124 STSSPKAEDGAAPSPSSETPKKKKKRFSFK 153
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT| 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1328 Score = 31.6 bits (70), Expect = 3.3 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Frame = -3 Query: 384 SGDTSSAPPKKKKR-RTCYECGIAGHLSSECPNMAK 280 SG + + K R R CY C GH +CPN K Sbjct: 215 SGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRK 250
>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 520 Score = 31.6 bits (70), Expect = 3.3 Identities = 23/94 (24%), Positives = 29/94 (30%), Gaps = 1/94 (1%) Frame = -3 Query: 573 QNKIDDGS-TSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSV 397 QN + G P KCY CG GH+ CP Sbjct: 382 QNMVQQGGGRGRPRPPPKCYNCGKFGHMQRQCPE-------------------------- 415 Query: 396 ENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 295 P+K K C +CG GHL+ +C Sbjct: 416 ------------PRKIK---CLKCGKPGHLAKDC 434
>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 521 Score = 31.6 bits (70), Expect = 3.3 Identities = 22/97 (22%), Positives = 29/97 (29%) Frame = -3 Query: 585 MASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSA 406 M S+ G P KCY CG GH+ CP Sbjct: 383 MQSQNMMQQGGQRGRPRPPVKCYNCGKFGHMQRQCPE----------------------- 419 Query: 405 VSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSEC 295 P+K + C +CG GHL+ +C Sbjct: 420 ---------------PRKMR---CLKCGKPGHLAKDC 438
>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 531 Score = 26.9 bits (58), Expect(2) = 3.4 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 382 +++ C++CG GH C ++A + + A G + S + N PS Sbjct: 408 RKKGCWKCGKEGHQMKDCNERQANFLREDLAFLQGKAREFSSEQTRANSPS 458 Score = 23.1 bits (48), Expect(2) = 3.4 Identities = 7/14 (50%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GHL+ C Sbjct: 391 CFNCGKEGHLARNC 404
>YFYA_SCHPO (Q9UT18) Putative amino-acid permease C9.10| Length = 591 Score = 31.2 bits (69), Expect = 4.4 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +1 Query: 106 YTTQSKFDKGKWKIQDCSVNCLMIMLVRNHF 198 + T+ KF KG+W + S CL+I LV N F Sbjct: 495 FITRDKFPKGRWSLGWLSKPCLVITLVYNLF 525
>ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6| Length = 1495 Score = 31.2 bits (69), Expect = 4.4 Identities = 14/55 (25%), Positives = 26/55 (47%) Frame = -3 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSECP 292 +P++AKP+ ++ + + P K + + C+ CG GH+ ECP Sbjct: 1414 TPQKAKPMRAAA-DLGREKILRPPVEKWKRQDDKDLREKRCFICGREGHIKKECP 1467
>C5AP_STRP6 (Q5X9R0) C5a peptidase precursor (EC 3.4.21.-) (SCP)| Length = 1184 Score = 31.2 bits (69), Expect = 4.4 Identities = 33/120 (27%), Positives = 48/120 (40%) Frame = -3 Query: 699 AMNVAFLAICRLLAQNKSAXEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKC 520 A N+ + + +LL + + E + P +P+ P EQ DGS AP K+ Sbjct: 1016 AGNITYTPVTKLLEGHSNKPEQDGSDQVPDKKPETKP----EQ----DGSGQAPDKKP-- 1065 Query: 519 YECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRR 340 E S P+KK EAKP S + E KP D+S P K ++ Sbjct: 1066 -ETKPEQDGSGQAPDKKP------EAKPEQDGSGQTPDKKPETKPEKDSSGQTPGKTPQK 1118
>POL_HV1EL (P04589) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 31.2 bits (69), Expect = 4.4 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%) Frame = -3 Query: 555 GSTSAPSKRRKCYECGISGHLSSAC--PNKKATVISPEEAKPVGGSSMEPSAVSVENK-- 388 G+ P K KC+ CG GH++ C P KK +E + + + EN Sbjct: 381 GNFKGPRKIIKCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLKDCTERQANFLRENLAF 440 Query: 387 PSGDTSSAPPKKKK 346 P G PK+ + Sbjct: 441 PQGKAGELSPKQTR 454
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 31.2 bits (69), Expect = 4.4 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -3 Query: 360 PKKKKRRTCYECGIAGHLSSECP 292 P +R CY CG GH S ECP Sbjct: 154 PGMGERTGCYRCGQEGHWSKECP 176
>POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 27.3 bits (59), Expect(2) = 5.2 Identities = 17/79 (21%), Positives = 31/79 (39%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 355 +++ C++CG GH C ++A + + A G + S + N P+ + Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLREDLAFLQGKAREFSSEQTRANSPTISSEQTRAN 467 Query: 354 KKKRRTCYECGIAGHLSSE 298 RR G + SE Sbjct: 468 SPTRRELQVWGRDNNSPSE 486 Score = 25.4 bits (54), Expect(2) = 6.7 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSAC--PNKK 469 K KC+ CG GH + C P KK Sbjct: 387 KMVKCFNCGKEGHTARNCRAPRKK 410 Score = 23.5 bits (49), Expect(2) = 6.7 Identities = 6/18 (33%), Positives = 12/18 (66%) Frame = -3 Query: 348 KRRTCYECGIAGHLSSEC 295 +++ C++CG GH +C Sbjct: 408 RKKGCWKCGKEGHQMKDC 425 Score = 21.9 bits (45), Expect(2) = 5.2 Identities = 7/19 (36%), Positives = 10/19 (52%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH + C Sbjct: 386 RKMVKCFNCGKEGHTARNC 404
>POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 27.3 bits (59), Expect(2) = 5.2 Identities = 17/79 (21%), Positives = 31/79 (39%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 355 +++ C++CG GH C ++A + + A G + S + N P+ + Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLREDLAFLQGKAREFSSEQTRANSPTISSEQTRAN 467 Query: 354 KKKRRTCYECGIAGHLSSE 298 RR G + SE Sbjct: 468 SPTRRELQVWGRDNNSPSE 486 Score = 25.4 bits (54), Expect(2) = 6.7 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSAC--PNKK 469 K KC+ CG GH + C P KK Sbjct: 387 KMVKCFNCGKEGHTARNCRAPRKK 410 Score = 23.5 bits (49), Expect(2) = 6.7 Identities = 6/18 (33%), Positives = 12/18 (66%) Frame = -3 Query: 348 KRRTCYECGIAGHLSSEC 295 +++ C++CG GH +C Sbjct: 408 RKKGCWKCGKEGHQMKDC 425 Score = 21.9 bits (45), Expect(2) = 5.2 Identities = 7/19 (36%), Positives = 10/19 (52%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH + C Sbjct: 386 RKMVKCFNCGKEGHTARNC 404
>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 26.9 bits (58), Expect(2) = 5.2 Identities = 14/65 (21%), Positives = 27/65 (41%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPK 355 +++ C++CG GH C ++A + + A G + S + N P+ + Sbjct: 408 RKKGCWKCGKEGHQMKDCTERQANFLREDLAFLQGKAREFSSEQTRANSPTISSEQTRAN 467 Query: 354 KKKRR 340 RR Sbjct: 468 SPTRR 472 Score = 22.3 bits (46), Expect(2) = 5.2 Identities = 6/14 (42%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GH++ C Sbjct: 391 CFNCGKEGHIARNC 404
>POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1440 Score = 26.6 bits (57), Expect(2) = 5.2 Identities = 9/31 (29%), Positives = 17/31 (54%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEA 442 ++R C++CG GH C ++A + + A Sbjct: 411 RKRGCWKCGKEGHQMKDCTERQANFLREDLA 441 Score = 22.7 bits (47), Expect(2) = 5.2 Identities = 6/14 (42%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GH++ C Sbjct: 394 CFNCGKEGHIAKNC 407
>POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1436 Score = 25.8 bits (55), Expect(2) = 5.2 Identities = 12/51 (23%), Positives = 23/51 (45%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPS 382 +++ C+ CG GH C ++A + + A G + S + N P+ Sbjct: 410 RKKGCWRCGREGHQMKDCTERQANFLREDLAFLQGKAREFSSEQTRANSPT 460 Score = 23.5 bits (49), Expect(2) = 5.2 Identities = 7/19 (36%), Positives = 11/19 (57%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH++ C Sbjct: 388 RKTVKCFNCGKEGHIAKNC 406
>GAG_HV1ND (P18800) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 496 Score = 30.0 bits (66), Expect = 9.7 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%) Frame = -3 Query: 555 GSTSAPSKRRKCYECGISGHLSSAC--PNKK 469 G+ P K KC+ CG GH + C P KK Sbjct: 378 GNFKGPRKSIKCFNCGKEGHTAKNCRAPRKK 408 Score = 26.9 bits (58), Expect(2) = 5.7 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +++ C++CG GH C ++A + P G S EP+A E+ G+ Sbjct: 406 RKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFGFGEE 465 Query: 372 SSAPPKKKKR 343 + K++++ Sbjct: 466 ITPSQKQEQK 475 Score = 22.3 bits (46), Expect(2) = 5.7 Identities = 7/19 (36%), Positives = 10/19 (52%) Frame = -2 Query: 715 KKRRTCYECGIPGHLSSAC 659 +K C+ CG GH + C Sbjct: 384 RKSIKCFNCGKEGHTAKNC 402
>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6| Length = 1491 Score = 30.8 bits (68), Expect = 5.7 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = -3 Query: 471 KATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSECP 292 K T + +AKPV ++++ + P+ + + + C+ CG GH+ ECP Sbjct: 1405 KLTPCAAAKAKPVR-AAVDLGREKLLRTPTEKWKRQDDRDSREKRCFICGREGHIKKECP 1463
>GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(HML-2.HOM) Gag protein) (HERV-K108 Gag protein) (HERV-K(C7) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 30.8 bits (68), Expect = 5.7 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -3 Query: 528 RKCYECGISGHLSSACP 478 RKCY CG GHL CP Sbjct: 543 RKCYNCGQIGHLKKNCP 559 Score = 30.4 bits (67), Expect = 7.5 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -3 Query: 342 RTCYECGIAGHLSSECPNMAK 280 R CY CG GHL CP + K Sbjct: 543 RKCYNCGQIGHLKKNCPVLNK 563
>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9| Length = 273 Score = 30.8 bits (68), Expect = 5.7 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Frame = -3 Query: 522 CYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKR 343 C+ C GH + CP V+ ++ G+ + S E++ S ++ P + Sbjct: 130 CFHCRQPGHGIADCP----AVLESQDM----GTGICYRCGSTEHEMSKCRANVDPALGEF 181 Query: 342 --RTCYECGIAGHLSSECPNMAK 280 C+ CG GHLS CP+ K Sbjct: 182 PFAKCFVCGEMGHLSRSCPDNTK 204
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 30.8 bits (68), Expect = 5.7 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -3 Query: 336 CYECGIAGHLSSECPNM 286 CY CG +GH S ECP + Sbjct: 170 CYRCGRSGHWSKECPRL 186
>PQBP1_RAT (Q6PCT5) Polyglutamine-binding protein 1 (Polyglutamine| tract-binding protein 1) (PQBP-1) Length = 263 Score = 30.8 bits (68), Expect = 5.7 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = -3 Query: 477 NKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSE 298 NKKAT EE P M+PS+ S + P G S+ PK+ + +T + AG L + Sbjct: 188 NKKATSRKDEELDP-----MDPSSYS--DAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQ 240 Query: 297 CP 292 P Sbjct: 241 RP 242
>PQBP1_MOUSE (Q91VJ5) Polyglutamine-binding protein 1 (Polyglutamine| tract-binding protein 1) (PQBP-1) (38 kDa nuclear protein containing a WW domain) (Npw38) Length = 263 Score = 30.8 bits (68), Expect = 5.7 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = -3 Query: 477 NKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSE 298 NKKAT EE P M+PS+ S + P G S+ PK+ + +T + AG L + Sbjct: 188 NKKATSRKDEELDP-----MDPSSYS--DAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQ 240 Query: 297 CP 292 P Sbjct: 241 RP 242
>GAG_HV1EL (P04592) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 30.4 bits (67), Expect = 7.5 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Frame = -3 Query: 555 GSTSAPSKRRKCYECGISGHLSSAC--PNKK 469 G+ P K KC+ CG GH++ C P KK Sbjct: 381 GNFKGPRKIIKCFNCGKEGHIAKNCRAPRKK 411 Score = 26.2 bits (56), Expect(2) = 7.3 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKATVIS---PEEAKPVGG---SSMEPSAVSVENKPSGDT 373 +++ C+ CG GH C ++A + P G S EP+A E+ G+ Sbjct: 409 RKKGCWRCGKEGHQLKDCTERQANFLGRIWPSHKGRPGNFLQSRPEPTAPPAESFGFGEE 468 Query: 372 SSAPPKKKKR 343 + K++++ Sbjct: 469 ITPSQKQEQK 478 Score = 22.7 bits (47), Expect(2) = 7.3 Identities = 6/14 (42%), Positives = 9/14 (64%) Frame = -2 Query: 700 CYECGIPGHLSSAC 659 C+ CG GH++ C Sbjct: 392 CFNCGKEGHIAKNC 405
>ZCH14_HUMAN (Q8WYQ9) Zinc finger CCHC domain-containing protein 14 (BDG-29)| Length = 949 Score = 30.4 bits (67), Expect = 7.5 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = -3 Query: 381 GDTSSAPPKKKKRRTCYECGIAGHLSSEC 295 G ++ + KK +CY CG GH + +C Sbjct: 893 GSSNGSSHKKSGNLSCYNCGATGHRAQDC 921
>MARCS_RAT (P30009) Myristoylated alanine-rich C-kinase substrate (MARCKS)| (Protein kinase C substrate 80 kDa protein) Length = 308 Score = 30.4 bits (67), Expect = 7.5 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Frame = -3 Query: 582 ASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEE-----AKPVGGSSM 418 A+++ + G + P+ K E + +A +K+A P E A+ G S+ Sbjct: 65 AADKEEPASGGAATPAAADKD-EAAAAPEPGAATADKEAAEAEPAEPGSPSAETEGASAS 123 Query: 417 EPSAVSVENKPSGDTSSAPPKKKKRRTCYE 328 S+ E+ + SS PKKKK+R ++ Sbjct: 124 STSSPKAEDGAAPSPSSETPKKKKKRFSFK 153
>SGO1_CAEBR (Q60ZS1) Shugoshin| Length = 306 Score = 30.4 bits (67), Expect = 7.5 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = -3 Query: 453 PEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKK 352 PEEA P G P ++ P G APP+K Sbjct: 207 PEEAAPAVGYKRAPLLIAPSETPGGPPKKAPPRK 240
>GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 622 Score = 30.4 bits (67), Expect = 7.5 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -3 Query: 528 RKCYECGISGHLSSACP 478 +KCY CG GHL +CP Sbjct: 590 KKCYNCGQIGHLKRSCP 606 Score = 30.0 bits (66), Expect = 9.7 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -3 Query: 342 RTCYECGIAGHLSSECPNMAK 280 + CY CG GHL CP + K Sbjct: 590 KKCYNCGQIGHLKRSCPGLNK 610
>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 513 Score = 30.4 bits (67), Expect = 7.5 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = -3 Query: 525 KCYECGISGHLSSACPNKKATVISPEE---AKPVGGSSMEPSAVSVE-NKPSGDTSSAPP 358 KC++CG GH++ C N +A + AKP V +E P +T+ P Sbjct: 412 KCFKCGKIGHMAKDCKNGQANFLGYGHWGGAKPRNFVQYRGDTVGLEPTAPPMETAYDPA 471 Query: 357 KK 352 KK Sbjct: 472 KK 473
>CCW14_YEAST (O13547) Covalently-linked cell wall protein 14 precursor (Inner| cell wall protein) Length = 238 Score = 30.4 bits (67), Expect = 7.5 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 6/89 (6%) Frame = -3 Query: 579 SEQN-KIDDGSTSAPSKRRKCYECGIS--GHLSSACPNKKATVISPEEAKPVGGSSMEPS 409 SEQN + D S+SA S + S SSA + KA+ S + SS PS Sbjct: 84 SEQNASLGDSSSSASSSASSSSKASSSTKASSSSASSSTKASSSSASSSTKASSSSAAPS 143 Query: 408 ---AVSVENKPSGDTSSAPPKKKKRRTCY 331 A S E+ S +S+ P ++ + Y Sbjct: 144 SSKASSTESSSSSSSSTKAPSSEESSSTY 172
>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 30.4 bits (67), Expect = 7.5 Identities = 9/23 (39%), Positives = 18/23 (78%) Frame = -3 Query: 534 KRRKCYECGISGHLSSACPNKKA 466 +R+ C++CG GH+ + CP+++A Sbjct: 407 RRQGCWKCGKPGHIMTNCPDRQA 429 Score = 30.4 bits (67), Expect = 7.5 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = -2 Query: 712 KRRTCYECGIPGHLSSACP 656 +R+ C++CG PGH+ + CP Sbjct: 407 RRQGCWKCGKPGHIMTNCP 425
>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 25.0 bits (53), Expect(2) = 8.5 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%) Frame = -3 Query: 525 KCYECGISGHLSSAC--PNKK 469 KC+ CG GH + C P KK Sbjct: 390 KCFNCGKEGHTARNCRAPRKK 410 Score = 23.5 bits (49), Expect(2) = 8.5 Identities = 6/18 (33%), Positives = 12/18 (66%) Frame = -3 Query: 348 KRRTCYECGIAGHLSSEC 295 +++ C++CG GH +C Sbjct: 408 RKKGCWKCGKEGHQMKDC 425
>T2FA_HUMAN (P35269) Transcription initiation factor IIF alpha subunit (EC| 2.7.11.1) (TFIIF-alpha) (Transcription initiation factor RAP74) (General transcription factor IIF polypeptide 1 74 kDa subunit protein) Length = 517 Score = 30.0 bits (66), Expect = 9.7 Identities = 25/81 (30%), Positives = 31/81 (38%) Frame = -3 Query: 609 DEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVG 430 +E K AP ++ + D S S+ E I SSA K E KP G Sbjct: 324 EEEKKAPTPQEKKRRKDSSEESDSSE-----ESDIDSEASSALFMAKKKTPPKRERKPSG 378 Query: 429 GSSMEPSAVSVENKPSGDTSS 367 GSS S + G TSS Sbjct: 379 GSSRGNSRPGTPSAEGGSTSS 399
>ZCH10_RAT (Q5EB97) Zinc finger CCHC domain-containing protein 10| Length = 173 Score = 30.0 bits (66), Expect = 9.7 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Frame = -3 Query: 582 ASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAV 403 +S+ + + S S S + G LSS+ + + S + SS S+ Sbjct: 91 SSDSSASESSSESETSASSSSEDSDADGSLSSSSSSSAYSSSSSSSSSSSSSSSDSDSSS 150 Query: 402 SVENKPSGDTSS--APPKKKKRR 340 S + S ++SS PPKK+K++ Sbjct: 151 SSSSSSSSESSSDDEPPKKRKKK 173
>NCA11_MOUSE (P13595) Neural cell adhesion molecule 1, 180 kDa isoform precursor| (N-CAM 180) (NCAM-180) Length = 1115 Score = 30.0 bits (66), Expect = 9.7 Identities = 24/91 (26%), Positives = 36/91 (39%) Frame = -3 Query: 636 VVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVI 457 V ++ + P PK AP + + D TSAPS + +LSS + V+ Sbjct: 881 VTASSSSPASAPKVAPLV-----DLSDTPTSAPS----------ASNLSSTVLANQGAVL 925 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSA 364 SP G +S P A P+ + A Sbjct: 926 SPSTPASAGETSKAPPASKASPAPTPTPAGA 956
>NAC48_ORYSA (Q7F2L3) NAC domain-containing protein 48 (ONAC048)| Length = 303 Score = 30.0 bits (66), Expect = 9.7 Identities = 21/81 (25%), Positives = 32/81 (39%) Frame = -3 Query: 468 ATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRRTCYECGIAGHLSSECPN 289 A V SP E KPV P + ++P S + P+ +C E ++ + E + Sbjct: 193 AAVSSPPEQKPVVAGPAFPDLAAYYDRP----SDSMPRLHADSSCSEQVLSPEFACEVQS 248 Query: 288 MAK*SWWTSCFLVVSALRSGA 226 K S W F V + A Sbjct: 249 QPKISEWERTFATVGPINPAA 269
>C5AP_STRP1 (P58099) C5a peptidase precursor (EC 3.4.21.-) (SCP)| Length = 1181 Score = 30.0 bits (66), Expect = 9.7 Identities = 33/120 (27%), Positives = 47/120 (39%) Frame = -3 Query: 699 AMNVAFLAICRLLAQNKSAXEVVSNHTQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKC 520 A N+ + + +LL + + E + P +P+ P EQ DGS AP K+ Sbjct: 1016 AGNITYTPVTKLLEGHSNKPEQDGSDQAPDKKPETKP----EQ----DGSGQAPDKKP-- 1065 Query: 519 YECGISGHLSSACPNKKATVISPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKKKKRR 340 E S P+KK PE GS P E KP D+S P K ++ Sbjct: 1066 -ETKPEQDGSGQTPDKK-----PETKPEQDGSGQTPDK-KPETKPEKDSSGQTPGKTPQK 1118
>RAD18_NEUCR (P33288) Postreplication repair ubiquitin-protein ligase E3 rad-18| (EC 6.-.-.-) (UV radiation sensitivity protein 2) Length = 501 Score = 30.0 bits (66), Expect = 9.7 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 4/94 (4%) Frame = -3 Query: 621 TQPFDEPKYAPYMASEQNKIDDGSTSAPSKRRKCYECGISGHLSSACPNKKATVISPEEA 442 T P +P Y DDG + P + E + HL ++CP SP+ A Sbjct: 169 TTPSADPDYV------DQPPDDGLVACPICLTRMKEQQVDRHLDTSCPG------SPQAA 216 Query: 441 ---KPVGGSSMEPSAV-SVENKPSGDTSSAPPKK 352 +P+ + +PS S + + T+ PP++ Sbjct: 217 SKRRPIPAQTPQPSTFPSFNTRLTSQTNQKPPER 250
>ICAL_SHEEP (Q95208) Calpastatin (Calpain inhibitor)| Length = 723 Score = 30.0 bits (66), Expect = 9.7 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 8/89 (8%) Frame = -3 Query: 624 HTQPFDEPKYAPYMASE----QNKIDDGSTSAPSKR----RKCYECGISGHLSSACPNKK 469 HT+P +PK+ S+ + + S PS++ + + ISG SA P Sbjct: 60 HTEPKSQPKHPSDTRSKHAPKEKAVSKSSEQPPSEKSTKPKTKSQDEISGGGKSAVP-AV 118 Query: 468 ATVISPEEAKPVGGSSMEPSAVSVENKPS 382 A S E A S + SAV VE+KPS Sbjct: 119 AAAASAEPADKNKESKLLTSAVPVESKPS 147
>COAT_CAMVE (Q02951) Coat protein| Length = 488 Score = 30.0 bits (66), Expect = 9.7 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -3 Query: 360 PKKKKRRTCYECGIAGHLSSECPN 289 PK KK C+ I GH ++ECPN Sbjct: 405 PKGKKDCRCWISNIEGHYANECPN 428
>CAC1D_CHICK (O73700) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (CHCACHA1D) Length = 2190 Score = 30.0 bits (66), Expect = 9.7 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Frame = -3 Query: 618 QPFDEPKYAPYMASEQNKID-DGST-----SAPSKRRKCYECGISGHLSSACPNKKATVI 457 QP P+ A Y +S + + DG T SAPSK+ + +A K A + Sbjct: 8 QPEQHPEEANYASSTRIPLPGDGPTTQSNSSAPSKQTVL---SWQAAIDAARQAKAAQNM 64 Query: 456 SPEEAKPVGGSSMEPSAVSVENKPSGDTSSAPPKK 352 + A+PVG S ++K G+TS++ P + Sbjct: 65 NTTTAQPVGSLSQRKRQQYAKSKKQGNTSNSRPPR 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 120,992,971 Number of Sequences: 219361 Number of extensions: 2547600 Number of successful extensions: 8234 Number of sequences better than 10.0: 138 Number of HSP's better than 10.0 without gapping: 6521 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8090 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 9614453625 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
