>DRTS_CRIFA (Q23695) Bifunctional dihydrofolate reductase-thymidylate synthase|
           (DHFR-TS) [Includes: Dihydrofolate reductase (EC
           1.5.1.3); Thymidylate synthase (EC 2.1.1.45)]
          Length = 515

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -2

Query: 281 MAHQRS*SNGCTISLVDSTEAXXTPKVCQQNGVLPCPFSLVNSTAXPHIYSNHVQ--KMQ 108
           M +QR    G  +    ++ A  T  + +  G+ P    LV++    H+YSNHV+  K Q
Sbjct: 413 MLYQRCCDMGLGVPFNIASYALLTILIAKATGLRPG--ELVHTLGTAHVYSNHVEALKEQ 470

Query: 107 LKXLLILF 84
           L+ + + F
Sbjct: 471 LQRVPVAF 478

>GCM1_HUMAN (Q9NP62) Chorion-specific transcription factor GCMa (Glial cells|
           missing homolog 1) (GCM motif protein 1) (hGCMa)
          Length = 436

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 248 TISLVDSTEAXXTPKVCQQNGVLPCPFSLVNSTAXPHIYSNHV 120
           ++SL  STE    P   Q  G LP  +S       P  YS H+
Sbjct: 180 SLSLKGSTETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGHL 222

>DRTS_TRYCR (Q27793) Bifunctional dihydrofolate reductase-thymidylate synthase|
           (DHFR-TS) [Includes: Dihydrofolate reductase (EC
           1.5.1.3); Thymidylate synthase (EC 2.1.1.45)]
          Length = 521

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -2

Query: 281 MAHQRS*SNGCTISLVDSTEAXXTPKVCQQNGVLPCPFSLVNSTAXPHIYSNHVQ 117
           M +QRS   G  +    ++ A  T  + +  G+ P    LV++    H+YSNHV+
Sbjct: 419 MLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPG--ELVHTLGDAHVYSNHVE 471

>DRTS_TRYBB (Q27783) Bifunctional dihydrofolate reductase-thymidylate synthase|
           (DHFR-TS) [Includes: Dihydrofolate reductase (EC
           1.5.1.3); Thymidylate synthase (EC 2.1.1.45)]
          Length = 527

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -2

Query: 281 MAHQRS*SNGCTISLVDSTEAXXTPKVCQQNGVLPCPFSLVNSTAXPHIYSNHVQ--KMQ 108
           M +QRS   G  +    ++ A  T  + + +G+ P    LV++    H+YSNHV+  + Q
Sbjct: 425 MLYQRSCDMGLGVPFNIASYALLTFLMAKASGLRPG--ELVHTLGDAHVYSNHVEPCRKQ 482

Query: 107 LK 102
           LK
Sbjct: 483 LK 484

>USH2A_HUMAN (O75445) Usherin precursor (Usher syndrome type-2A protein) (Usher|
            syndrome type IIa protein)
          Length = 5202

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 248  CTHCSRIAGEPYQGLSSSSEPTGEWYTPSKLI 343
            CT     + EP+ G +  + P G W TP  +I
Sbjct: 3661 CTSAGCTSSEPFLGQTLQAAPEGVWVTPRHII 3692

>TYSY_BRAJA (Q89G35) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)|
          Length = 264

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 221 AXXTPKVCQQNGVLPCPFSLVNSTAXPHIYSNHVQKMQLK 102
           A  T  V Q  G+ P  F  V+S    H+YSNH+++ +L+
Sbjct: 182 ALLTMMVAQVTGLKPGDF--VHSFGDTHLYSNHLEQAKLQ 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,924,842
Number of Sequences: 219361
Number of extensions: 995442
Number of successful extensions: 2105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2105
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)