ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4l09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LIPB_PROMA (Q7VDH8) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl... 30 4.2
2P53_MOUSE (P02340) Cellular tumor antigen p53 (Tumor suppressor ... 30 7.2

>LIPB_PROMA (Q7VDH8) Lipoyltransferase (EC 2.3.1.-) (Lipoyl-[acyl-carrier|
           protein]-protein-N-lipoyltransferase) (Lipoate-protein
           ligase B)
          Length = 224

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -3

Query: 275 WCHAKLQLMIGHSAETWQASN*MTEKLCVSMDGLNQFVEIHHRPYRVHQTNTW 117
           WC+ K    IG S   W   + +   +   + G NQ V    + Y+  + N+W
Sbjct: 146 WCNGKKVASIGISCRRWITQHGIALNVDCDLLGFNQIVPCGLKDYQTGRLNSW 198



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>P53_MOUSE (P02340) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 390

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +2

Query: 194 KAFLSFSYLLAMFQLNDRSSTVVSHDTIGHSVFCMVKFNQSVSNHK 331
           K F  F  L    +L D  +T  S D+  HS +   K  QS S HK
Sbjct: 333 KRFEMFRELNEALELKDAHATEESGDSRAHSSYLKTKKGQSTSRHK 378


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,902,387
Number of Sequences: 219361
Number of extensions: 1419916
Number of successful extensions: 2730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2730
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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