ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4k23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_477022.1| Oryza sativa (japonica cultivar-group), mRNA 66 3e-08
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 66 3e-08
3dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic D... 66 3e-08
4dbj|AK102401.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 3e-08
5dbj|AK060217.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 3e-08
6gb|AC099051.2| Homo sapiens chromosome 3 clone RP11-416A9, compl... 42 0.48
7ref|XM_469999.1| Oryza sativa (japonica cultivar-group), mRNA 40 1.9
8ref|XM_470000.1| Oryza sativa (japonica cultivar-group), mRNA 40 1.9
9dbj|AK120592.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.9
10dbj|AK073430.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.9
11emb|AL139241.11| Human DNA sequence from clone RP11-34A14 on chr... 38 7.5
12gb|AY112457.1| Zea mays CL204_1 mRNA sequence 38 7.5

>ref|XM_477022.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2966

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 5    tgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57
            |||||||| |||||||| ||||||||||| |||||||| || |||||||||||
Sbjct: 2344 tgctgaaggccaaggggacccaaaggcttcggtccctgttcaatctcttccca 2292



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                    
Query: 5       tgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57
               |||||||| |||||||| ||||||||||| |||||||| || |||||||||||
Sbjct: 5453609 tgctgaaggccaaggggacccaaaggcttcggtccctgttcaatctcttccca 5453661



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>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0519E02
          Length = 139321

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 5     tgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57
             |||||||| |||||||| ||||||||||| |||||||| || |||||||||||
Sbjct: 87590 tgctgaaggccaaggggacccaaaggcttcggtccctgttcaatctcttccca 87642



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>dbj|AK102401.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092J15, full
            insert sequence
          Length = 2967

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 5    tgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57
            |||||||| |||||||| ||||||||||| |||||||| || |||||||||||
Sbjct: 2345 tgctgaaggccaaggggacccaaaggcttcggtccctgttcaatctcttccca 2293



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>dbj|AK060217.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-E03, full
            insert sequence
          Length = 1870

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 5    tgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57
            |||||||| |||||||| ||||||||||| |||||||| || |||||||||||
Sbjct: 1246 tgctgaaggccaaggggacccaaaggcttcggtccctgttcaatctcttccca 1194



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>gb|AC099051.2| Homo sapiens chromosome 3 clone RP11-416A9, complete sequence
          Length = 174372

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    ccaaaggctttggtccctgct 44
             |||||||||||||||||||||
Sbjct: 87068 ccaaaggctttggtccctgct 87048



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>ref|XM_469999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2715

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 2    aactgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57
            ||||||||||| |||||||| |||| || | |||| ||||  || |||||||||||
Sbjct: 2021 aactgctgaagtccaaggggacccagagcccttggcccctcttcaatctcttccca 1966



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>ref|XM_470000.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3763

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 2    aactgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57
            ||||||||||| |||||||| |||| || | |||| ||||  || |||||||||||
Sbjct: 3108 aactgctgaagtccaaggggacccagagcccttggcccctcttcaatctcttccca 3053



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>dbj|AK120592.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146K15, full
            insert sequence
          Length = 3764

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 2    aactgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57
            ||||||||||| |||||||| |||| || | |||| ||||  || |||||||||||
Sbjct: 3109 aactgctgaagtccaaggggacccagagcccttggcccctcttcaatctcttccca 3054



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>dbj|AK073430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043M17, full
           insert sequence
          Length = 1653

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 2   aactgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57
           ||||||||||| |||||||| |||| || | |||| ||||  || |||||||||||
Sbjct: 997 aactgctgaagtccaaggggacccagagcccttggcccctcttcaatctcttccca 942



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>emb|AL139241.11| Human DNA sequence from clone RP11-34A14 on chromosome 10 Contains the 3'
              end of gene FLJ37160, the LOXL4 gene for lysyl oxidase-like
              4, a novel gene and a CpG island, complete sequence
          Length = 188192

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      ctgctgaagaccaaggggg 22
              |||||||||||||||||||
Sbjct: 152887 ctgctgaagaccaaggggg 152905



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>gb|AY112457.1| Zea mays CL204_1 mRNA sequence
          Length = 2667

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 36/42 (85%)
 Strand = Plus / Minus

                                                      
Query: 26   aaaggctttggtccctgctcgatctcttcccanaaagcctgg 67
            |||||||||| ||| || || ||||||||||| || ||||||
Sbjct: 2090 aaaggctttgctccttgttcaatctcttcccaaaaggcctgg 2049


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 442,596
Number of Sequences: 3902068
Number of extensions: 442596
Number of successful extensions: 26708
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26684
Number of HSP's gapped (non-prelim): 24
length of query: 157
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 135
effective length of database: 17,147,199,772
effective search space: 2314871969220
effective search space used: 2314871969220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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