Clone Name | rbaak4k23 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_477022.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2966 Score = 65.9 bits (33), Expect = 3e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 5 tgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57 |||||||| |||||||| ||||||||||| |||||||| || ||||||||||| Sbjct: 2344 tgctgaaggccaaggggacccaaaggcttcggtccctgttcaatctcttccca 2292
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 65.9 bits (33), Expect = 3e-08 Identities = 48/53 (90%) Strand = Plus / Plus Query: 5 tgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57 |||||||| |||||||| ||||||||||| |||||||| || ||||||||||| Sbjct: 5453609 tgctgaaggccaaggggacccaaaggcttcggtccctgttcaatctcttccca 5453661
>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E02 Length = 139321 Score = 65.9 bits (33), Expect = 3e-08 Identities = 48/53 (90%) Strand = Plus / Plus Query: 5 tgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57 |||||||| |||||||| ||||||||||| |||||||| || ||||||||||| Sbjct: 87590 tgctgaaggccaaggggacccaaaggcttcggtccctgttcaatctcttccca 87642
>dbj|AK102401.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092J15, full insert sequence Length = 2967 Score = 65.9 bits (33), Expect = 3e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 5 tgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57 |||||||| |||||||| ||||||||||| |||||||| || ||||||||||| Sbjct: 2345 tgctgaaggccaaggggacccaaaggcttcggtccctgttcaatctcttccca 2293
>dbj|AK060217.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-E03, full insert sequence Length = 1870 Score = 65.9 bits (33), Expect = 3e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 5 tgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57 |||||||| |||||||| ||||||||||| |||||||| || ||||||||||| Sbjct: 1246 tgctgaaggccaaggggacccaaaggcttcggtccctgttcaatctcttccca 1194
>gb|AC099051.2| Homo sapiens chromosome 3 clone RP11-416A9, complete sequence Length = 174372 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 ccaaaggctttggtccctgct 44 ||||||||||||||||||||| Sbjct: 87068 ccaaaggctttggtccctgct 87048
>ref|XM_469999.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2715 Score = 40.1 bits (20), Expect = 1.9 Identities = 47/56 (83%) Strand = Plus / Minus Query: 2 aactgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57 ||||||||||| |||||||| |||| || | |||| |||| || ||||||||||| Sbjct: 2021 aactgctgaagtccaaggggacccagagcccttggcccctcttcaatctcttccca 1966
>ref|XM_470000.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3763 Score = 40.1 bits (20), Expect = 1.9 Identities = 47/56 (83%) Strand = Plus / Minus Query: 2 aactgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57 ||||||||||| |||||||| |||| || | |||| |||| || ||||||||||| Sbjct: 3108 aactgctgaagtccaaggggacccagagcccttggcccctcttcaatctcttccca 3053
>dbj|AK120592.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146K15, full insert sequence Length = 3764 Score = 40.1 bits (20), Expect = 1.9 Identities = 47/56 (83%) Strand = Plus / Minus Query: 2 aactgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57 ||||||||||| |||||||| |||| || | |||| |||| || ||||||||||| Sbjct: 3109 aactgctgaagtccaaggggacccagagcccttggcccctcttcaatctcttccca 3054
>dbj|AK073430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043M17, full insert sequence Length = 1653 Score = 40.1 bits (20), Expect = 1.9 Identities = 47/56 (83%) Strand = Plus / Minus Query: 2 aactgctgaagaccaagggggcccaaaggctttggtccctgctcgatctcttccca 57 ||||||||||| |||||||| |||| || | |||| |||| || ||||||||||| Sbjct: 997 aactgctgaagtccaaggggacccagagcccttggcccctcttcaatctcttccca 942
>emb|AL139241.11| Human DNA sequence from clone RP11-34A14 on chromosome 10 Contains the 3' end of gene FLJ37160, the LOXL4 gene for lysyl oxidase-like 4, a novel gene and a CpG island, complete sequence Length = 188192 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 ctgctgaagaccaaggggg 22 ||||||||||||||||||| Sbjct: 152887 ctgctgaagaccaaggggg 152905
>gb|AY112457.1| Zea mays CL204_1 mRNA sequence Length = 2667 Score = 38.2 bits (19), Expect = 7.5 Identities = 36/42 (85%) Strand = Plus / Minus Query: 26 aaaggctttggtccctgctcgatctcttcccanaaagcctgg 67 |||||||||| ||| || || ||||||||||| || |||||| Sbjct: 2090 aaaggctttgctccttgttcaatctcttcccaaaaggcctgg 2049 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 442,596 Number of Sequences: 3902068 Number of extensions: 442596 Number of successful extensions: 26708 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26684 Number of HSP's gapped (non-prelim): 24 length of query: 157 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 135 effective length of database: 17,147,199,772 effective search space: 2314871969220 effective search space used: 2314871969220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)