ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4k21 |
|---|---|
| Clone Library Name | barley_pub |
>ANP_NOTCO (P24856) Ice-structuring glycoprotein precursor (ISGP) (Antifreeze| glycopeptide polyprotein) (AFGP polyprotein) [Contains: AFGP7 (AFGP 7); AFGP8 (AFGP 8); AFGP8-like] (Fragment) Length = 790 Score = 30.8 bits (68), Expect = 0.95 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSARKRRQMAXFYPRQADQTTVS 63 P+TA + + AA P+ A TP + A AAT+A F A T + Sbjct: 644 PATAALNFAATAATPATAATPALIFAATAATAATPATAALNFAATAATPATAA 696 Score = 30.8 bits (68), Expect = 0.95 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSARKRRQMAXFYPRQADQTTVS 63 P+TA + + AA P+ A TP + A AAT+A F A T + Sbjct: 525 PATAALNFAATAATPATAATPALIFAATAATAATPATAALNFAATAATPATAA 577 Score = 30.8 bits (68), Expect = 0.95 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSARKRRQMAXFYPRQADQTTVS 63 P+TA + + AA P+ A TP + A AAT+A F A T + Sbjct: 304 PATAALNFAATAATPATAATPALIFAATAATAATPATAALNFAATAATPATAA 356 Score = 30.8 bits (68), Expect = 0.95 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSARKRRQMAXFYPRQADQTTVS 63 P+TA + + AA P+ A TP + A AAT+A F A T + Sbjct: 49 PATAALNFAATAATPATAATPALIFAAAAATAATPATAALNFAATAATPATAA 101 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 P+TA + + AA P+ A TP + A AAT+A Sbjct: 678 PATAALNFAATAATPATAATPALIFAATAATAA 710 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 P+TA + + AA P+ A TP + A AAT+A Sbjct: 559 PATAALNFAATAATPATAATPALIFAATAATAA 591 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 P+TA + + AA P+ A TP + A AAT+A Sbjct: 474 PATAALNFAATAATPATAATPALIFAATAATAA 506 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 P+TA + + AA P+ A TP + A AAT+A Sbjct: 423 PATAALNFAATAATPATAATPALIFAATAATAA 455 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 P+TA + + AA P+ A TP + A AAT+A Sbjct: 338 PATAALNFAATAATPATAATPALIFAATAATAA 370 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 P+TA + + AA P+ A TP + A AAT+A Sbjct: 185 PATAALNFAATAATPATAATPALIFAATAATAA 217 Score = 30.4 bits (67), Expect = 1.2 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 P+TA + + AA P+ A TP + A AAT+A Sbjct: 83 PATAALNFAATAATPATAATPALIFAATAATAA 115 Score = 30.0 bits (66), Expect = 1.6 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSARKRRQMAXFYPRQADQTTVS 63 P+TA + AA P+ A TP + A AAT+A F A T + Sbjct: 236 PATAACNFAATAATPATAATPALIFAATAATAATPATAACNFAATAATPATAA 288 Score = 29.6 bits (65), Expect = 2.1 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSARKRRQMAXFYPRQADQTTVS 63 P+TA + AA P+ A TP + A AAT+A F A T + Sbjct: 270 PATAACNFAATAATPATAATPALIFAATAATAATPATAALNFAATAATPATAA 322 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 245 HGSXXXXIPSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 H + P+TA P + AA + A TP A AAT+A Sbjct: 599 HFAATAATPATAATPALIFAATAATAATPATAALNFAATAA 639 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 245 HGSXXXXIPSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 H + P+TA P + AA + A TP A AAT+A Sbjct: 157 HFAATAATPATAATPALIFAATAATAATPATAALNFAATAA 197 Score = 28.9 bits (63), Expect = 3.6 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSARKRRQMAXFYPRQADQTTVS 63 P+TA + + AA P+ TP + A AAT+A F A T + Sbjct: 15 PATAALNFAATAATPATPATPALIFAATAATAATPATAALNFAATAATPATAA 67 Score = 28.1 bits (61), Expect = 6.2 Identities = 16/53 (30%), Positives = 22/53 (41%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSARKRRQMAXFYPRQADQTTVS 63 P+T + AA P+ A TP + A AAT+A F A T + Sbjct: 389 PATPAFNFAATAATPATAATPALIFAATAATAATPATAALNFAATAATPATAA 441 Score = 28.1 bits (61), Expect = 6.2 Identities = 16/53 (30%), Positives = 22/53 (41%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSARKRRQMAXFYPRQADQTTVS 63 P+T + AA P+ A TP + A AAT+A F A T + Sbjct: 151 PATPAFHFAATAATPATAATPALIFAATAATAATPATAALNFAATAATPATAA 203 Score = 28.1 bits (61), Expect = 6.2 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 245 HGSXXXXIPSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 H + P+TA P + AA + A TP A AAT+A Sbjct: 123 HFAATAATPATAATPALIFAATAATAATPATPAFHFAATAA 163 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 P+T + AA P+ A TP + A AAT+A Sbjct: 593 PATPAFHFAATAATPATAATPALIFAATAATAA 625 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 221 PSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 P+T + AA P+ A TP + A AAT+A Sbjct: 117 PATPAFHFAATAATPATAATPALIFAATAATAA 149
>FLBA_EMENI (P38093) Developmental regulator flbA| Length = 719 Score = 28.5 bits (62), Expect = 4.7 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = -3 Query: 224 IPSTAVIPWITAAAIPSAAVTPRITAAVIAATSARKRRQMA 102 +PS + + +P+ TP T +VI + S R RR A Sbjct: 60 LPSFTSTSSLITSDVPATTTTPSFTGSVIGSISRRNRRSFA 100
>Y3654_MYCBO (P59985) Hypothetical protein Mb3654| Length = 431 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = -3 Query: 218 STAVIPWITAAAIPSAAVTPRITAAVIAA 132 S+A++ W+TAAA+ A +T AAV AA Sbjct: 349 SSALLAWLTAAAVAIAMLTLTGAAAVAAA 377
>Y3630_MYCTU (O06377) Hypothetical protein Rv3630/MT3732| Length = 431 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = -3 Query: 218 STAVIPWITAAAIPSAAVTPRITAAVIAA 132 S+A++ W+TAAA+ A +T AAV AA Sbjct: 349 SSALLAWLTAAAVAIAMLTLTGAAAVAAA 377
>AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathrin| coat-associated protein AP180) (91 kDa synaptosomal-associated protein) Length = 915 Score = 27.7 bits (60), Expect = 8.1 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = -3 Query: 248 PHGSXXXXIPSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 P S +P+TA P TA A +A T A A TSA Sbjct: 506 PTASTAPPVPATAPSPAPTAVAATAATTTAAAAATTTATTSA 547
>AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clathrin| coat-associated protein AP180) (91 kDa synaptosomal-associated protein) (Phosphoprotein F1-20) Length = 901 Score = 27.7 bits (60), Expect = 8.1 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = -3 Query: 248 PHGSXXXXIPSTAVIPWITAAAIPSAAVTPRITAAVIAATSA 123 P S +P+TA P TA A +A T A A TSA Sbjct: 506 PTASTAPPVPATAPSPAPTAVAATAATTTAAAAATTTATTSA 547
>SRP14_HUMAN (P37108) Signal recognition particle 14 kDa protein (SRP14) (18 kDa| Alu RNA-binding protein) Length = 136 Score = 27.7 bits (60), Expect = 8.1 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = -3 Query: 191 AAAIPSAAVTPRITAAVIAATSAR 120 AAA P+AA T TAA AAT+A+ Sbjct: 113 AAAAPAAAATAATTAATTAATAAQ 136 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,156,882 Number of Sequences: 219361 Number of extensions: 259947 Number of successful extensions: 1052 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 972 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1040 length of database: 80,573,946 effective HSP length: 63 effective length of database: 66,754,203 effective search space used: 1602100872 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
