ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4k21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_470617.1| Oryza sativa (japonica cultivar-group), predic... 40 3.4
2gb|AC159420.1| Trypanosoma brucei chromosome 8 clone RPCI93-26A1... 40 3.4
3gb|AC091701.3| Trypanosoma brucei chromosome 8 clone RPCI93-26N1... 40 3.4
4gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 3.4
5ref|XM_452256.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C01364g ... 40 3.4
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.4
7ref|XM_818839.1| Trypanosoma brucei TREU927 clone RPCI93-26A17 h... 40 3.4
8ref|XM_818844.1| Trypanosoma brucei TREU927 clone RPCI93-26A17 h... 40 3.4
9gb|AC093548.4| Drosophila melanogaster 3L BAC RP98-15B4 (Roswell... 40 3.4
10emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 3.4
11gb|AC010012.5| Drosophila melanogaster 3L BAC RP98-22J16 (Roswel... 40 3.4
12gb|AC010006.8| Drosophila melanogaster 3L BAC RP98-20A11 (Roswel... 40 3.4
13gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
14gb|AC131108.3| Mus musculus BAC clone RP23-351K24 from chromosom... 40 3.4
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
16gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
17dbj|AK106306.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
18gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 ... 40 3.4
19dbj|AP006666.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 3.4
20dbj|AP006646.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 3.4
21dbj|AP006634.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 3.4
22dbj|AP006136.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 3.4
23dbj|AP004969.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 3.4
24dbj|AP004967.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 3.4
25dbj|AP004952.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 3.4
26dbj|AP004933.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 3.4
27dbj|AP004913.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 3.4
28dbj|AP004494.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 3.4
29gb|AC106843.11| Mus musculus chromosome 15, clone RP24-151M4, co... 40 3.4

>ref|XM_470617.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1767

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  gctgctgctgtgatccatgg 203
            ||||||||||||||||||||
Sbjct: 1390 gctgctgctgtgatccatgg 1371



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>gb|AC159420.1| Trypanosoma brucei chromosome 8 clone RPCI93-26A17, complete sequence
          Length = 142479

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 21   aaccaagaaaggaaagattg 40
            ||||||||||||||||||||
Sbjct: 8694 aaccaagaaaggaaagattg 8713



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 21   aaccaagaaaggaaagattg 40
            ||||||||||||||||||||
Sbjct: 5368 aaccaagaaaggaaagattg 5387



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>gb|AC091701.3| Trypanosoma brucei chromosome 8 clone RPCI93-26N11, complete sequence
          Length = 142253

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     aaccaagaaaggaaagattg 40
              ||||||||||||||||||||
Sbjct: 137072 aaccaagaaaggaaagattg 137091



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     aaccaagaaaggaaagattg 40
              ||||||||||||||||||||
Sbjct: 133746 aaccaagaaaggaaagattg 133765



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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     aaccaagaaaggaaagattg 40
              ||||||||||||||||||||
Sbjct: 695985 aaccaagaaaggaaagattg 696004



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     aaccaagaaaggaaagattg 40
              ||||||||||||||||||||
Sbjct: 692659 aaccaagaaaggaaagattg 692678



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>ref|XM_452256.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C01364g predicted mRNA
          Length = 261

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 17  gaagaaccaagaaaggaaag 36
           ||||||||||||||||||||
Sbjct: 207 gaagaaccaagaaaggaaag 226



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 184     gctgctgctgtgatccatgg 203
               ||||||||||||||||||||
Sbjct: 6963253 gctgctgctgtgatccatgg 6963272



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>ref|XM_818839.1| Trypanosoma brucei TREU927 clone RPCI93-26A17 hypothetical protein
           (Tb927.8.2260) partial mRNA
          Length = 600

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 21  aaccaagaaaggaaagattg 40
           ||||||||||||||||||||
Sbjct: 501 aaccaagaaaggaaagattg 520



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>ref|XM_818844.1| Trypanosoma brucei TREU927 clone RPCI93-26A17 hypothetical protein
           (Tb927.8.2280) partial mRNA
          Length = 600

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 21  aaccaagaaaggaaagattg 40
           ||||||||||||||||||||
Sbjct: 501 aaccaagaaaggaaagattg 520



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>gb|AC093548.4| Drosophila melanogaster 3L BAC RP98-15B4 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 171697

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    gggttactgctgctgatggt 180
              ||||||||||||||||||||
Sbjct: 130525 gggttactgctgctgatggt 130506



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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1753957

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     gaagaaccaagaaaggaaag 36
              ||||||||||||||||||||
Sbjct: 105363 gaagaaccaagaaaggaaag 105382



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>gb|AC010012.5| Drosophila melanogaster 3L BAC RP98-22J16 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170466

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    gggttactgctgctgatggt 180
              ||||||||||||||||||||
Sbjct: 154293 gggttactgctgctgatggt 154312



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>gb|AC010006.8| Drosophila melanogaster 3L BAC RP98-20A11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 169735

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    gggttactgctgctgatggt 180
              ||||||||||||||||||||
Sbjct: 149594 gggttactgctgctgatggt 149575



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>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11,
              complete sequence
          Length = 123620

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    gctgctgctgtgatccatgg 203
              ||||||||||||||||||||
Sbjct: 119112 gctgctgctgtgatccatgg 119093



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>gb|AC131108.3| Mus musculus BAC clone RP23-351K24 from chromosome 16, complete
             sequence
          Length = 175409

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    ctgtcaaataatctttcttc 61
             ||||||||||||||||||||
Sbjct: 54692 ctgtcaaataatctttcttc 54673



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 184     gctgctgctgtgatccatgg 203
               ||||||||||||||||||||
Sbjct: 6961148 gctgctgctgtgatccatgg 6961167



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>gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1017C11,
              complete sequence
          Length = 166072

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    gctgctgctgtgatccatgg 203
              ||||||||||||||||||||
Sbjct: 129850 gctgctgctgtgatccatgg 129869



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>dbj|AK106306.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-C10, full
            insert sequence
          Length = 2510

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  gctgctgctgtgatccatgg 203
            ||||||||||||||||||||
Sbjct: 1733 gctgctgctgtgatccatgg 1714



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>gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 of 83 of the complete
              sequence
          Length = 312072

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    gggttactgctgctgatggt 180
              ||||||||||||||||||||
Sbjct: 212365 gggttactgctgctgatggt 212384



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>dbj|AP006666.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT46L11, TM0365,
              complete sequence
          Length = 122449

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    ggatgttgctgctatcaccg 145
              ||||||||||||||||||||
Sbjct: 101447 ggatgttgctgctatcaccg 101428



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>dbj|AP006646.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04I09, TM0269b,
            complete sequence
          Length = 66087

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  ggatgttgctgctatcaccg 145
            ||||||||||||||||||||
Sbjct: 2421 ggatgttgctgctatcaccg 2440



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>dbj|AP006634.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT15O18, TM0086,
             complete sequence
          Length = 133572

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   ggatgttgctgctatcaccg 145
             ||||||||||||||||||||
Sbjct: 91743 ggatgttgctgctatcaccg 91762



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>dbj|AP006136.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT30K08, TM0237,
             complete sequence
          Length = 114468

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   ggatgttgctgctatcaccg 145
             ||||||||||||||||||||
Sbjct: 12069 ggatgttgctgctatcaccg 12088



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>dbj|AP004969.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT34P02, TM0146,
            complete sequence
          Length = 110752

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 126  ggatgttgctgctatcaccg 145
            ||||||||||||||||||||
Sbjct: 4047 ggatgttgctgctatcaccg 4028



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>dbj|AP004967.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT27L02, TM0144,
             complete sequence
          Length = 89959

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   ggatgttgctgctatcaccg 145
             ||||||||||||||||||||
Sbjct: 59867 ggatgttgctgctatcaccg 59848



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>dbj|AP004952.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT19C08, TM0125,
             complete sequence
          Length = 89551

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   ggatgttgctgctatcaccg 145
             ||||||||||||||||||||
Sbjct: 41143 ggatgttgctgctatcaccg 41162



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>dbj|AP004933.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT10J03, TM0094b,
             complete sequence
          Length = 65726

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   ggatgttgctgctatcaccg 145
             ||||||||||||||||||||
Sbjct: 61163 ggatgttgctgctatcaccg 61144



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>dbj|AP004913.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02A14, TM0072a,
             complete sequence
          Length = 100740

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   ggatgttgctgctatcaccg 145
             ||||||||||||||||||||
Sbjct: 46498 ggatgttgctgctatcaccg 46479



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>dbj|AP004494.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09I17, TM0026,
            complete sequence
          Length = 103129

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  ggatgttgctgctatcaccg 145
            ||||||||||||||||||||
Sbjct: 8454 ggatgttgctgctatcaccg 8473



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>gb|AC106843.11| Mus musculus chromosome 15, clone RP24-151M4, complete sequence
          Length = 179117

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 129   tgttgctgctatcaccgctgctgt 152
             |||| |||||||||||||||||||
Sbjct: 39368 tgttcctgctatcaccgctgctgt 39345


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,418,267
Number of Sequences: 3902068
Number of extensions: 2418267
Number of successful extensions: 38155
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38068
Number of HSP's gapped (non-prelim): 87
length of query: 265
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 243
effective length of database: 17,147,199,772
effective search space: 4166769544596
effective search space used: 4166769544596
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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