Clone Name | rbaak4k21 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_470617.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1767 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gctgctgctgtgatccatgg 203 |||||||||||||||||||| Sbjct: 1390 gctgctgctgtgatccatgg 1371
>gb|AC159420.1| Trypanosoma brucei chromosome 8 clone RPCI93-26A17, complete sequence Length = 142479 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaccaagaaaggaaagattg 40 |||||||||||||||||||| Sbjct: 8694 aaccaagaaaggaaagattg 8713 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaccaagaaaggaaagattg 40 |||||||||||||||||||| Sbjct: 5368 aaccaagaaaggaaagattg 5387
>gb|AC091701.3| Trypanosoma brucei chromosome 8 clone RPCI93-26N11, complete sequence Length = 142253 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaccaagaaaggaaagattg 40 |||||||||||||||||||| Sbjct: 137072 aaccaagaaaggaaagattg 137091 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaccaagaaaggaaagattg 40 |||||||||||||||||||| Sbjct: 133746 aaccaagaaaggaaagattg 133765
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaccaagaaaggaaagattg 40 |||||||||||||||||||| Sbjct: 695985 aaccaagaaaggaaagattg 696004 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaccaagaaaggaaagattg 40 |||||||||||||||||||| Sbjct: 692659 aaccaagaaaggaaagattg 692678
>ref|XM_452256.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C01364g predicted mRNA Length = 261 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gaagaaccaagaaaggaaag 36 |||||||||||||||||||| Sbjct: 207 gaagaaccaagaaaggaaag 226
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gctgctgctgtgatccatgg 203 |||||||||||||||||||| Sbjct: 6963253 gctgctgctgtgatccatgg 6963272
>ref|XM_818839.1| Trypanosoma brucei TREU927 clone RPCI93-26A17 hypothetical protein (Tb927.8.2260) partial mRNA Length = 600 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaccaagaaaggaaagattg 40 |||||||||||||||||||| Sbjct: 501 aaccaagaaaggaaagattg 520
>ref|XM_818844.1| Trypanosoma brucei TREU927 clone RPCI93-26A17 hypothetical protein (Tb927.8.2280) partial mRNA Length = 600 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaccaagaaaggaaagattg 40 |||||||||||||||||||| Sbjct: 501 aaccaagaaaggaaagattg 520
>gb|AC093548.4| Drosophila melanogaster 3L BAC RP98-15B4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171697 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gggttactgctgctgatggt 180 |||||||||||||||||||| Sbjct: 130525 gggttactgctgctgatggt 130506
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1753957 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gaagaaccaagaaaggaaag 36 |||||||||||||||||||| Sbjct: 105363 gaagaaccaagaaaggaaag 105382
>gb|AC010012.5| Drosophila melanogaster 3L BAC RP98-22J16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170466 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 gggttactgctgctgatggt 180 |||||||||||||||||||| Sbjct: 154293 gggttactgctgctgatggt 154312
>gb|AC010006.8| Drosophila melanogaster 3L BAC RP98-20A11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169735 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gggttactgctgctgatggt 180 |||||||||||||||||||| Sbjct: 149594 gggttactgctgctgatggt 149575
>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11, complete sequence Length = 123620 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gctgctgctgtgatccatgg 203 |||||||||||||||||||| Sbjct: 119112 gctgctgctgtgatccatgg 119093
>gb|AC131108.3| Mus musculus BAC clone RP23-351K24 from chromosome 16, complete sequence Length = 175409 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctgtcaaataatctttcttc 61 |||||||||||||||||||| Sbjct: 54692 ctgtcaaataatctttcttc 54673
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gctgctgctgtgatccatgg 203 |||||||||||||||||||| Sbjct: 6961148 gctgctgctgtgatccatgg 6961167
>gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1017C11, complete sequence Length = 166072 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gctgctgctgtgatccatgg 203 |||||||||||||||||||| Sbjct: 129850 gctgctgctgtgatccatgg 129869
>dbj|AK106306.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-C10, full insert sequence Length = 2510 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gctgctgctgtgatccatgg 203 |||||||||||||||||||| Sbjct: 1733 gctgctgctgtgatccatgg 1714
>gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 of 83 of the complete sequence Length = 312072 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 gggttactgctgctgatggt 180 |||||||||||||||||||| Sbjct: 212365 gggttactgctgctgatggt 212384
>dbj|AP006666.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT46L11, TM0365, complete sequence Length = 122449 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggatgttgctgctatcaccg 145 |||||||||||||||||||| Sbjct: 101447 ggatgttgctgctatcaccg 101428
>dbj|AP006646.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04I09, TM0269b, complete sequence Length = 66087 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ggatgttgctgctatcaccg 145 |||||||||||||||||||| Sbjct: 2421 ggatgttgctgctatcaccg 2440
>dbj|AP006634.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT15O18, TM0086, complete sequence Length = 133572 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ggatgttgctgctatcaccg 145 |||||||||||||||||||| Sbjct: 91743 ggatgttgctgctatcaccg 91762
>dbj|AP006136.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT30K08, TM0237, complete sequence Length = 114468 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ggatgttgctgctatcaccg 145 |||||||||||||||||||| Sbjct: 12069 ggatgttgctgctatcaccg 12088
>dbj|AP004969.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT34P02, TM0146, complete sequence Length = 110752 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggatgttgctgctatcaccg 145 |||||||||||||||||||| Sbjct: 4047 ggatgttgctgctatcaccg 4028
>dbj|AP004967.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT27L02, TM0144, complete sequence Length = 89959 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggatgttgctgctatcaccg 145 |||||||||||||||||||| Sbjct: 59867 ggatgttgctgctatcaccg 59848
>dbj|AP004952.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT19C08, TM0125, complete sequence Length = 89551 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ggatgttgctgctatcaccg 145 |||||||||||||||||||| Sbjct: 41143 ggatgttgctgctatcaccg 41162
>dbj|AP004933.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT10J03, TM0094b, complete sequence Length = 65726 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggatgttgctgctatcaccg 145 |||||||||||||||||||| Sbjct: 61163 ggatgttgctgctatcaccg 61144
>dbj|AP004913.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02A14, TM0072a, complete sequence Length = 100740 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggatgttgctgctatcaccg 145 |||||||||||||||||||| Sbjct: 46498 ggatgttgctgctatcaccg 46479
>dbj|AP004494.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09I17, TM0026, complete sequence Length = 103129 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ggatgttgctgctatcaccg 145 |||||||||||||||||||| Sbjct: 8454 ggatgttgctgctatcaccg 8473
>gb|AC106843.11| Mus musculus chromosome 15, clone RP24-151M4, complete sequence Length = 179117 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 tgttgctgctatcaccgctgctgt 152 |||| ||||||||||||||||||| Sbjct: 39368 tgttcctgctatcaccgctgctgt 39345 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,418,267 Number of Sequences: 3902068 Number of extensions: 2418267 Number of successful extensions: 38155 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38068 Number of HSP's gapped (non-prelim): 87 length of query: 265 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 243 effective length of database: 17,147,199,772 effective search space: 4166769544596 effective search space used: 4166769544596 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)