Clone Information

BLAST Search Result

Clone Name	rbaak4k20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	UL61_HCMVA (P16818) Hypothetical protein UL61	37	0.056
2	ATG4D_MOUSE (Q8BGV9) Cysteine protease ATG4D (EC 3.4.22.-) (Auto...	36	0.096
3	ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (T...	35	0.21
4	WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7...	34	0.28
5	IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2	33	0.48
6	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	33	0.48
7	COL8_CAEEL (P18833) Cuticle collagen 8 precursor	33	0.48
8	ADDA_RAT (Q63028) Alpha-adducin (Erythrocyte adducin alpha subunit)	33	0.48
9	RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-F...	33	0.62
10	FA20C_HUMAN (Q8IXL6) Protein FAM20C precursor	33	0.62
11	ADDA_MOUSE (Q9QYC0) Alpha-adducin (Erythrocyte adducin alpha sub...	33	0.81
12	PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presy...	32	1.1
13	SRG53_CAEEL (O16974) Serpentine receptor class gamma-53 (Protein...	32	1.1
14	GP153_HUMAN (Q6NV75) Probable G-protein coupled receptor 153 (G-...	32	1.1
15	WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)	32	1.4
16	WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-W...	32	1.4
17	CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor	32	1.4
18	CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment)	32	1.4
19	ADDA_HUMAN (P35611) Alpha-adducin (Erythrocyte adducin alpha sub...	32	1.8
20	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	32	1.8
21	YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3	31	2.4
22	BAB1_DROME (Q9W0K7) Protein bric-a-brac 1	31	2.4
23	VID21_CRYNE (Q5KL22) Chromatin modification-related protein VID21	31	2.4
24	CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta...	31	3.1
25	COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor	31	3.1
26	IF2_STRAW (Q82K53) Translation initiation factor IF-2	31	3.1
27	CLC14_HUMAN (Q86T13) C-type lectin domain family 14 member A pre...	31	3.1
28	CUC3A_HAECO (P16253) Cuticle collagen 3A3	31	3.1
29	COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor	31	3.1
30	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	31	3.1
31	G3OX1_ARATH (Q39103) Gibberellin 3-beta-dioxygenase 1 (EC 1.14.1...	31	3.1
32	CSKI2_HUMAN (Q8WXE0) Caskin-2	30	4.0
33	CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor	30	4.0
34	CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor	30	4.0
35	CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor	30	4.0
36	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	30	4.0
37	RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP ...	30	4.0
38	CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragm...	30	4.0
39	COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)	30	4.0
40	COL39_CAEEL (Q09455) Cuticle collagen 39 precursor	30	4.0
41	SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos...	30	5.3
42	YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6	30	5.3
43	TBC17_HUMAN (Q9HA65) TBC1 domain family member 17	30	5.3
44	COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibr...	30	5.3
45	CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor	30	5.3
46	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	30	5.3
47	EMIL2_HUMAN (Q9BXX0) EMILIN-2 precursor (Elastin microfibril int...	30	5.3
48	CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor	30	5.3
49	CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long...	30	5.3
50	WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-W...	30	5.3
51	COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor	30	6.9
52	SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inosit...	30	6.9
53	CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor	30	6.9
54	CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor	30	6.9
55	CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor	30	6.9
56	CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor	30	6.9
57	CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (End...	30	6.9
58	COL13_CAEEL (P20631) Cuticle collagen 13 precursor	30	6.9
59	COL12_CAEEL (P20630) Cuticle collagen 12 precursor	30	6.9
60	CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor	30	6.9
61	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	30	6.9
62	CL43_BOVIN (P42916) Collectin-43 precursor (CL-43) (43 kDa colle...	30	6.9
63	GCP2_ARATH (Q9M1S8) Probable glutamate carboxypeptidase 2 (EC 3....	30	6.9
64	RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type rya...	30	6.9
65	CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (End...	30	6.9
66	CO6A1_HUMAN (P12109) Collagen alpha-1(VI) chain precursor	30	6.9
67	SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs...	30	6.9
68	WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-W...	30	6.9
69	COCA1_BOVIN (P25508) Collagen alpha-1(XII) chain (Fragments)	30	6.9
70	IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2	29	9.0
71	CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor	29	9.0
72	VM01_VACCV (P14356) Ankyrin repeat protein M1	29	9.0
73	COL2_CAEEL (P17656) Cuticle collagen 2 precursor	29	9.0
74	CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor	29	9.0
75	CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragme...	29	9.0
76	CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor	29	9.0
77	VM01_VACCC (P20640) Ankyrin repeat protein M1	29	9.0
78	CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor	29	9.0
79	RIR1_HCMVA (P16782) Ribonucleoside-diphosphate reductase large c...	29	9.0
80	N4BP1_HUMAN (O75113) NEDD4-binding protein 1 (N4BP1) (Fragment)	29	9.0
81	INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase...	29	9.0
82	EGR4_HUMAN (Q05215) Early growth response protein 4 (EGR-4) (AT133)	29	9.0
83	CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodp...	29	9.0
84	CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor	29	9.0

>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 29/74 (39%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
 Frame = -3

Query: 485 PAARAGRGRL-PPDPERAGAEAPAQQERVP----DPGAEGAELDPG----PQGRPEAMVG 333
           PA R GRGR   P P  + A  P  + R P    DPG E  E   G    P G P A  G
Sbjct: 225 PAPRGGRGRARTPGPVHSAAGGPGSRRRSPGAARDPGPEPGEERGGGGKPPLGSPRATDG 284

Query: 332 S--SGTGIGAMWGR 297
           +   G G+ A  GR
Sbjct: 285 NRDPGAGVPARPGR 298

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>ATG4D_MOUSE (Q8BGV9) Cysteine protease ATG4D (EC 3.4.22.-) (Autophagy-related|
           protein 4 homolog D) (Autophagin-4) (Autophagy-related
           cysteine endopeptidase 4) (AUT-like 4 cysteine
           endopeptidase)
          Length = 474

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 22/55 (40%), Positives = 25/55 (45%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGT 321
           PAA   R     D  RA    P  Q R+PDP       + GP G   A +GSSGT
Sbjct: 6   PAAAQYRSGSSEDARRADCRRPRGQTRIPDPS------NLGPSGSGVAALGSSGT 54

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>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
           activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 470 GRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 348
           G G  PP  +++GA+AP    R P P        PGP+  P
Sbjct: 740 GGGPRPPKTKKSGADAPGSDARAPLPAPAPPSTPPGPEPAP 780

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>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1)|
           (Protein kinase with no lysine 2) (Protein kinase,
           lysine-deficient 2)
          Length = 2297

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 19/46 (41%), Positives = 20/46 (43%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 348
           PAA   +   P  P  AG E    QE  PDP A   E  P P G P
Sbjct: 98  PAALVAQPGAPGAPADAGPEPVGTQEPGPDPIAAAVETAPAPDGGP 143

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>IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2|
          Length = 917

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 22/60 (36%), Positives = 24/60 (40%)
 Frame = -3

Query: 440 RAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVRTRCERTDE 261
           R+GA A    ER P P   G    P P  RP A     G G     GR  VR   E  D+
Sbjct: 244 RSGAAAGGDDERRPAPRRSGPGAPPAPPRRPSA-PSRKGGGSDRRSGRIDVRAAIEGDDD 302

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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 23/57 (40%), Positives = 25/57 (43%)
 Frame = -3

Query: 488 VPAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTG 318
           +P AR G G  PP PE  G + PA       PG  GA   PG QG P    G    G
Sbjct: 690 IPGARGGAG--PPGPE--GGKGPA-----GPPGPPGASGSPGLQGMPGERGGPGSPG 737

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>COL8_CAEEL (P18833) Cuticle collagen 8 precursor|
          Length = 282

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 485 PAARAG-RGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 348
           PA  AG +GR  P     G   P +Q     PGA G    PGP+G P
Sbjct: 154 PAGPAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAGCPGPPGPRGEP 200

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>ADDA_RAT (Q63028) Alpha-adducin (Erythrocyte adducin alpha subunit)|
          Length = 735

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 449 DPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 348
           DPE A A AP  +E       EG+ +DPG  G P
Sbjct: 676 DPEPASASAPGAEEVASPATEEGSPMDPGSDGSP 709

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>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF|
           hands-containing Rab-interacting protein) (Eferin)
          Length = 756

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = -3

Query: 491 AVPAARAGRGRLPPDPERAGAEAPAQQERVPDP-----GAEGAELDPGPQGRPEAMVGSS 327
           A PA+  G     PDPE  G + P   +  P P     GA     DP   G  E   G++
Sbjct: 4   APPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAA 63

Query: 326 GTGIGAMW 303
             G GA W
Sbjct: 64  ADG-GARW 70



 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
 Frame = -3

Query: 452 PDPERAGAEAPAQQERV---------PDPGAEGAELDPGPQGRP 348
           PDP+  G + PA              P PG EG   DPGP   P
Sbjct: 48  PDPQSPGLDEPAPGAAADGGARWSAGPAPGLEGGPRDPGPSAPP 91

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>FA20C_HUMAN (Q8IXL6) Protein FAM20C precursor|
          Length = 570

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 20/46 (43%), Positives = 23/46 (50%)
 Frame = -3

Query: 491 AVPAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQG 354
           A PA RA RGR   DP       PA +  + DPG   +E  PGP G
Sbjct: 100 AEPAERALRGR---DPGALRPHDPAHRPLLRDPGPRRSESPPGPGG 142

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>ADDA_MOUSE (Q9QYC0) Alpha-adducin (Erythrocyte adducin alpha subunit)|
          Length = 735

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
 Frame = -3

Query: 452 PDPERAGAEAPAQQERVPDPGAE---------GAELDPGPQGRP 348
           PDP +  AEA  +    P PGAE         G+ +DPG  G P
Sbjct: 666 PDPTQPPAEADPEPASAPTPGAEEVASPATEEGSPMDPGSDGSP 709

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>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein) (Brain-derived HLMN protein)
          Length = 5038

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 482 AARAGRGRLPPDPERAGAEAPAQQE-RVPDPGAEGAELDPGPQGRPEAMVGSSGT 321
           A   G+G++PP P ++ A+ P   +     PG + A   PGP   P  + G   T
Sbjct: 330 AQTPGQGKVPPGPAKSPAQQPGTAKLPAQQPGPQTAAKVPGPTKTPAQLSGPGKT 384

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>SRG53_CAEEL (O16974) Serpentine receptor class gamma-53 (Protein srg-53)|
          Length = 295

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 171 VTFHVLHGSVFCFCCPSARTAAVVGDHGSYSVIYMHDLCIILLYS 37
           V FHV   S  C CC    TA     +  +S  Y+    +I+LYS
Sbjct: 89  VFFHVQSASTICICCHRLSTAIFDNSNRFWSRFYLLVYALIILYS 133

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>GP153_HUMAN (Q6NV75) Probable G-protein coupled receptor 153 (G-protein coupled|
           receptor PGR1)
          Length = 609

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -3

Query: 461 RLPPDPERAGAEAP--AQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAMWG 300
           R PP P  A   AP  A     P P +  A+  PGP+    +  GS   G+ A WG
Sbjct: 516 RRPPGPFPAAPAAPDGADPGEAPTPPSS-AQRSPGPRPSAHSHAGSLRPGLSASWG 570

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>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGR-----PEAMVGSSGT 321
           P AR GRG  PP P RA   AP      P P   G  + P P  R     P A+  S+ +
Sbjct: 299 PPAR-GRGAPPPPPSRAPTAAPPP----PPPSRPGVVVPPPPPNRMYPPPPPALPSSAPS 353

Query: 320 G 318
           G
Sbjct: 354 G 354

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>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 501

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGR-----PEAMVGSSGT 321
           P AR GRG  PP P RA   AP      P P   G  + P P  R     P A+  S+ +
Sbjct: 299 PPAR-GRGAPPPPPSRAPTAAPPP----PPPSRPGVVVPPPPPNRMYPPPPPALPSSAPS 353

Query: 320 G 318
           G
Sbjct: 354 G 354

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>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor|
          Length = 1690

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -3

Query: 455  PPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 324
            PP P  A   AP     +PDPG  G +  PGP G P    G  G
Sbjct: 1240 PPGPAGATGRAPKD---IPDPGPPGDQGPPGPDG-PRGAPGPPG 1279

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>CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment)|
          Length = 453

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -3

Query: 455 PPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 324
           PP P   GA   A +  +PDPG  G +  PGP G P  + G  G
Sbjct: 2   PPGPP--GAPGKALKGDIPDPGLPGDQGPPGPDG-PRGVPGPPG 42

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>ADDA_HUMAN (P35611) Alpha-adducin (Erythrocyte adducin alpha subunit)|
          Length = 737

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -3

Query: 446 PERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 348
           PE A   AP  +E  P    EGA  DPG  G P
Sbjct: 679 PEPAPDPAPVAEEAAPSAVEEGAAADPGSDGSP 711

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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 461 RLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQG-RPEAMVGSSG 324
           R PP P       P Q+    +PG  GA+ DPGP+G R EA  GS G
Sbjct: 257 RGPPGPPGTNG-VPGQRGAAGEPGKNGAKGDPGPRGERGEA--GSPG 300



 Score = 29.6 bits (65), Expect = 6.9
 Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERA-GAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTG 318
           P  R G G  PP PE   GA  P        PG  G+   PG QG P    G  G G
Sbjct: 536 PGPRGGAG--PPGPEGGKGAAGP--------PGPPGSAGTPGLQGMPGERGGPGGPG 582

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>YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3|
          Length = 266

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 348
           P+   G    P  P + G +AP++      PGA G +  PGPQG P
Sbjct: 155 PSGPNGNPGAPGAPGQPGQDAPSEP---ITPGAPGPQGTPGPQGPP 197

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>BAB1_DROME (Q9W0K7) Protein bric-a-brac 1|
          Length = 977

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 22/62 (35%), Positives = 23/62 (37%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAM 306
           PA+ AG  R P  P  A A A       P P AE     P P       VG  G G G  
Sbjct: 423 PASPAGDSRFPLGPAAAMAAARELSGLGPGPSAEPRLPPPPPHHHGGGGVGGGGVGGGGA 482

Query: 305 WG 300
            G
Sbjct: 483 GG 484

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>VID21_CRYNE (Q5KL22) Chromatin modification-related protein VID21|
          Length = 985

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
 Frame = -3

Query: 479 ARAGRGRLPP-----DPERAGAEAPAQQERVPDPGAEGAELDPGPQG-RPEAMVGSSGTG 318
           A+A +GR P       P + G  +P  Q R PD  AEGA    GP G  P          
Sbjct: 773 AQAQQGRAPSMGGNLQPPQLGVSSPFAQSRTPDLPAEGA----GPSGINPTPSPAMQAAA 828

Query: 317 IGA 309
           IGA
Sbjct: 829 IGA 831

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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1418

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERA--GAEAPAQQERVP-DPGAEGAELDPGPQGRPEAMVGSSGTGI 315
           P A   +G   P   R   GA+ P  +   P  PG  GA  +PG  G P A   +   GI
Sbjct: 299 PGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 358

Query: 314 GAMWG 300
               G
Sbjct: 359 AGAPG 363

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>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor|
          Length = 3119

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 488  VPAARAGRGRLPPDPERA-GAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 324
            +P  +  RG     P    G   P  + R   PG+ G+   PGP GRP    G+SG
Sbjct: 2983 LPGEKGERGTGSQGPRGPPGPPGPQGESRTGPPGSTGSRGPPGPPGRP----GNSG 3034

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>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/46 (45%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 482 AARAGRGRLPPDPERAGAEAPAQQER-VPDPGAEGAELDPGPQGRP 348
           AAR    R PP P+ A AE PA  ER    P A G    P P  RP
Sbjct: 76  AARPAAPR-PPAPKPAAAERPAAAERPAAAPAAPGPRPGPKPAPRP 120

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>CLC14_HUMAN (Q86T13) C-type lectin domain family 14 member A precursor|
           (Epidermal growth factor receptor 5) (EGFR-5)
          Length = 490

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -3

Query: 428 EAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG---TGIGAMWGRCSVRTRCE 273
           E+P+ Q R    G  G E DP P     A +GSS    T  G   G C +R R E
Sbjct: 427 ESPSSQPRKESMGPPGLESDPEP-----AALGSSSAHCTNNGVKVGDCDLRDRAE 476

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>CUC3A_HAECO (P16253) Cuticle collagen 3A3|
          Length = 295

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = -3

Query: 491 AVPAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 324
           A P    G+   P DP   G   P  Q+ +P  G +G +  PGP G P    G SG
Sbjct: 146 AGPPGPPGKPGPPGDPGEDGQPGPPGQDGIP--GQQGTKGPPGPPGIP-GKPGESG 198

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>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor|
          Length = 3063

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 488  VPAARAGRGRLPPDPERA-GAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 324
            +P  +  RG     P    G   P  + R   PG+ G+   PGP GRP    G+SG
Sbjct: 2982 LPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGSRGPPGPPGRP----GNSG 3033

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>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGT 321
           P    GRG LP  P  +G   P  +    +PG  GA+ DPGP+G      G +GT
Sbjct: 406 PGPPGGRG-LPGPPGTSGN--PGAKGTPGEPGKNGAKGDPGPKGER----GENGT 453



 Score = 29.3 bits (64), Expect = 9.0
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = -3

Query: 473  AGRGRLPPDPERAGAEAP-AQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTG 318
            AG    P      G + P   Q  +  PGA GA   PGP G P    G  G G
Sbjct: 907  AGNNGAPGKAGERGFQGPLGPQGAIGSPGASGARGPPGPAGPP----GKDGRG 955

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>G3OX1_ARATH (Q39103) Gibberellin 3-beta-dioxygenase 1 (EC 1.14.11.15)|
           (Gibberellin 3 beta-hydroxylase 1) (GA 3-oxidase 1)
           (AtGA3ox1)
          Length = 358

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 466 GDAFHQILNGLARKLPHSKSVYLTPGQKALNWTQGPKGDLK 344
           GD FH + NGL + + H   V  T  + ++ +  GP+ D+K
Sbjct: 273 GDLFHILSNGLFKSVLHRARVNQTRARLSVAFLWGPQSDIK 313

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>CSKI2_HUMAN (Q8WXE0) Caskin-2|
          Length = 1202

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 443  ERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGI 315
            E AG   P        P ++  E +PGP+G P +  GSSG G+
Sbjct: 909  EPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSR-GSSGEGL 950

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>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor|
          Length = 920

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = -3

Query: 485 PAARA--GRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 348
           P AR   G+G L P      A  P +  R   PG  G    PGP G P
Sbjct: 347 PGARGLPGKGLLGPPGPAGAAGLPGEVGRAGPPGDPGKRGPPGPPGPP 394

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>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor|
          Length = 1759

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 395 PGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVRT 282
           PG +GA+ DPGP G P         G+  + GR  VRT
Sbjct: 191 PGLKGAKGDPGPYGLP------GFPGVSGLKGRMGVRT 222

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>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor|
          Length = 1019

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 22/71 (30%), Positives = 24/71 (33%)
 Frame = -3

Query: 476 RAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGR 297
           R G    P DP   G   P     VP P     E +PGP G P        T +    G 
Sbjct: 550 RKGEKGEPADPGPPGEPGPRGPRGVPGP-----EGEPGPPGDPGLTECDVMTYVRETCGC 604

Query: 296 CSVRTRCERTD 264
           C    RC   D
Sbjct: 605 CDCEKRCGALD 615

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDP----GAEGAELDPGPQGRPEAMVGSSGTG 318
           P A   +G   P   R G+E P      P P    GA G   +PG  G+P A   +   G
Sbjct: 335 PGAAGAKGETGPQGAR-GSEGPQGSRGEPGPPGPAGAAGPAGNPGADGQPGAKGATGAPG 393

Query: 317 IGAMWG 300
           I    G
Sbjct: 394 IAGAPG 399

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>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP|
           3'-pyrophosphotransferase) (ppGpp synthetase I)
           ((P)ppGpp synthetase)
          Length = 841

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = -3

Query: 491 AVPAARAGRGRLPPDPER-AGAEAPAQQERVPDPGAEGAELDPGPQ----GRPEAMVGSS 327
           A PAA A  G  P + +R A A+ PA++ R P P        P P+    G+P A  G S
Sbjct: 21  AEPAAHAQDGGGPVEHDRSAPADKPAERTR-PKPAPPERPRPPPPRARAAGQPAARSGGS 79

Query: 326 GTGIGAMWGRCSVRTRCERTDE*AQPCKPLLSSN 225
              + A   R  V+ R   T    +P   ++ +N
Sbjct: 80  SNRVRARLARLGVQ-RANLTHPVLEPLLRIVRAN 112

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>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)|
          Length = 747

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERA--GAEAPAQQERVP-DPGAEGAELDPGPQGRPEAMVGSSGTGI 315
           P A   +G   P   R   GA+ P  +   P  PG  GA  +PG  G P A   +   GI
Sbjct: 183 PGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAKGSAGAPGI 242

Query: 314 GAMWG 300
               G
Sbjct: 243 AGAPG 247

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>COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)|
          Length = 317

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = -3

Query: 488 VPAARAGRG------RLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSS 327
           +P  +  RG      R PP P       P  + R   PG+ G+   PGP GRP    G+S
Sbjct: 181 LPGEKGERGIGSQGPRGPPGPP-----GPQGESRTGPPGSTGSRGPPGPPGRP----GNS 231

Query: 326 G 324
           G
Sbjct: 232 G 232

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>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor|
          Length = 323

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -3

Query: 455 PPDPERAGAEAPAQQERVP----DPGAEGAELDPGPQGRPEAMVGSSGTG 318
           P  P  AG ++  QQE +      PG  GA   PGPQG P    G  G G
Sbjct: 116 PGQPGVAGPKSHEQQECIKCPAGSPGPAGAPGAPGPQG-PNGQPGHPGQG 164

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>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 223  TFDDSNGLHGWAYSSVLSHLVLTEHRPHMAPMPVPLLP 336
            +FDD      W+  + +S  VL   RP   P PVPLLP
Sbjct: 1516 SFDDD-----WSKGASVSFCVLPARRPPPPPPPVPLLP 1548

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>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6|
          Length = 278

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 324
           PA  AG    P  P  AG +          PGA+G    PGP G PE   G +G
Sbjct: 135 PAGEAGPAGAPGAPGPAGPDG--------QPGADGQGGAPGPAG-PEGPAGDAG 179



 Score = 29.6 bits (65), Expect = 6.9
 Identities = 22/54 (40%), Positives = 22/54 (40%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 324
           PA  AG    P  P   G      Q     PGA GA   PGPQG     VGS G
Sbjct: 174 PAGDAGAPGAPGAPGNDGQPGQNGQRSTGTPGAAGA---PGPQG----PVGSDG 220

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>TBC17_HUMAN (Q9HA65) TBC1 domain family member 17|
          Length = 648

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -3

Query: 467 RGRLPPDPERAGAEAPAQQERVPDPGAE---GAELDPGP 360
           RG L P PE A ++ P   +  P+PG E     EL P P
Sbjct: 235 RGALQPQPEGAASDLPPPPDDEPEPGFEVISCVELGPRP 273

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>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)|
          Length = 3124

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 488  VPAARAGRGRLPPDPERA-GAEAPAQQERVPDPGAEGAELDPGPQGRP 348
            +P  +  RG     P    G   P  + R   PG+ G+   PGP GRP
Sbjct: 2986 MPGEKGERGTGSQGPRGLPGPPGPQGESRTGPPGSTGSRGPPGPPGRP 3033

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>CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor|
          Length = 1029

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 21/74 (28%), Positives = 26/74 (35%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAM 306
           P  +  +G  P DP   G   P     +P P     E +PGP G P        T +   
Sbjct: 558 PGRKGDKGE-PADPGPPGEPGPRGPRGIPGP-----EGEPGPPGDPGLTECDVMTYVRET 611

Query: 305 WGRCSVRTRCERTD 264
            G C    RC   D
Sbjct: 612 CGCCDCEKRCGALD 625

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQG 354
           P     RG  PP P  A   AP  +    +PG  GA+ +PGP+G
Sbjct: 407 PGLMGARG--PPGPAGANG-APGLRGGAGEPGKNGAKGEPGPRG 447

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>EMIL2_HUMAN (Q9BXX0) EMILIN-2 precursor (Elastin microfibril interface-located|
           protein 2) (Elastin microfibril interfacer 2) (Protein
           FOAP-10)
          Length = 1053

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 21/57 (36%), Positives = 25/57 (43%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGI 315
           PA     GR P  P+R   E P Q      PG+ G   + G  G P A  G SG G+
Sbjct: 814 PATAEDPGRRPVLPQRPPEERPPQP-----PGSTGVIAETGQAG-PPAGAGVSGRGL 864

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>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 24/70 (34%), Positives = 26/70 (37%)
 Frame = -3

Query: 494  HAVPAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGI 315
            + VP  + GRG   P P   G   P    RV  PG  GA    GP G P         G 
Sbjct: 887  NGVPGLKGGRGTQGP-PGATGF--PGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGPRGD 943

Query: 314  GAMWGRCSVR 285
                GR  VR
Sbjct: 944  PGSHGRVGVR 953

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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 485  PAARAGRGRLPPDPERAGAEA-PAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 324
            P  + G   LP +   AG E  P  Q     PG  G   DPGP G P  + G +G
Sbjct: 2145 PRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAP-GLAGPAG 2198



 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -3

Query: 488  VPAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 348
            +P  R   G   P   +    AP Q      PG  G + DPGP G P
Sbjct: 1330 LPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPP 1376

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>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGR-----PEAMVGSSGT 321
           P AR GRG  PP P RA   AP      P P      + P P  R     P A+  S+ +
Sbjct: 302 PPAR-GRGAPPPPPSRAPTAAPPP----PPPSRPSVAVPPPPPNRMYPPPPPALPSSAPS 356

Query: 320 G 318
           G
Sbjct: 357 G 357

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>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor|
          Length = 674

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -3

Query: 461 RLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGT-GIGAMWGRCSVR 285
           R PP P   G   PA       PG +G   +PGP+G P    G  GT G+  + G+    
Sbjct: 138 RGPPGPP--GIPGPAGISVPGKPGPQGPTGEPGPRGFP----GEKGTSGVPGLNGQKGEM 191

Query: 284 TRCERTDE*AQPCKP 240
             C        PC+P
Sbjct: 192 GHC-------TPCRP 199

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>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 223  TFDDSNGLHGWAYSSVLSHLVLTEHRPHMAPMPVPLLP 336
            +FDD      W+  + +S  VL   RP   P PVPLLP
Sbjct: 1516 SFDDD-----WSKGTNVSFCVLPARRPPPPPPPVPLLP 1548

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>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
 Frame = -3

Query: 485  PAARAGRGRLPPDPERAGAEAPAQQERVP----DPGAEGAELDPGPQGRP 348
            P    G    P DP   G   PA Q+  P    D G  G    PGP G P
Sbjct: 1336 PKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEP 1385

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>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
 Frame = -3

Query: 485  PAARAGRGRLPPDPERAGAEAPAQQERVP----DPGAEGAELDPGPQGRP 348
            P    G    P DP   G   PA Q+  P    D G  G    PGP G P
Sbjct: 1336 PKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEP 1385

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>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
 Frame = -3

Query: 485  PAARAGRGRLPPDPERAGAEAPAQQERVP----DPGAEGAELDPGPQGRP 348
            P    G    P DP   G   PA Q+  P    D G  G    PGP G P
Sbjct: 1334 PKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEP 1383

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>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
 Frame = -3

Query: 485  PAARAGRGRLPPDPERAGAEAPAQQERVP----DPGAEGAELDPGPQGRP 348
            P    G    P DP   G   PA Q+  P    D G  G    PGP G P
Sbjct: 1334 PKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEP 1383

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>CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 699

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
 Frame = -3

Query: 485 PAARAGRG-RLPPDPER----AGAEAPAQQERVPDPGAEGAELDPGPQGRP-----EAMV 336
           P  R  +G R PP P      +G   P +      PG  G   +PGPQG P       + 
Sbjct: 142 PGIRGDQGLRGPPGPPGLPGPSGITVPGKPGAQGAPGPPGFRGEPGPQGEPGPRGDRGLK 201

Query: 335 GSSGTG 318
           G +G G
Sbjct: 202 GDNGVG 207

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>COL13_CAEEL (P20631) Cuticle collagen 13 precursor|
          Length = 316

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/57 (35%), Positives = 23/57 (40%)
 Frame = -3

Query: 491 AVPAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGT 321
           A P    G    P  P +AG+  P       D GA GA   PG  G P    G SG+
Sbjct: 245 AGPPGSPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAP-GQDGESGS 300

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>COL12_CAEEL (P20630) Cuticle collagen 12 precursor|
          Length = 316

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/57 (35%), Positives = 23/57 (40%)
 Frame = -3

Query: 491 AVPAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGT 321
           A P    G    P  P +AG+  P       D GA GA   PG  G P    G SG+
Sbjct: 245 AGPPGSPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAP-GQDGESGS 300

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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDP----GAEGAELDPGPQGRPEAMVGSSGTG 318
           P A   +G   P   R G+E P      P P    GA G   +PG  G+P A   +   G
Sbjct: 335 PGAAGAKGEAGPQGAR-GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPG 393

Query: 317 IGAMWG 300
           I    G
Sbjct: 394 IAGAPG 399

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = -3

Query: 452 PDPERAGAEAPA--QQERVP----DPGAEGAELDPGPQGRPEAMVGSSG 324
           P+P+R   E  A   +E V     D G EG + DPGPQG P   VG  G
Sbjct: 73  PNPQRREGECCAFCPEEYVSPNSEDVGVEGPKGDPGPQG-PRGPVGPPG 120

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>CL43_BOVIN (P42916) Collectin-43 precursor (CL-43) (43 kDa collectin)|
          Length = 321

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPA-QQERVPDPGAEGAELDPGPQGRPEA--MVGSSG 324
           P    G    P  P  AG E P+ +Q  +  PG  G + +PGP+G   A  M GS G
Sbjct: 59  PQGEKGDPGPPGMPGPAGREGPSGRQGSMGPPGTPGPKGEPGPEGGVGAPGMPGSPG 115

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>GCP2_ARATH (Q9M1S8) Probable glutamate carboxypeptidase 2 (EC 3.4.17.21)|
           (Probable glutamate carboxypeptidase II)
          Length = 705

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -2

Query: 255 PAVQAITVIKCKAPSFLITLLLFVVMCLVTFHVLHGSVFCFCCPSARTAAVVGDHGSYSV 76
           P V  I++I  + P  L + L  +V+ + TF+ LH        P A T  ++    +Y+ 
Sbjct: 9   PTVTGISIIPFRQPPPLCSFLFVIVLFVATFYTLHH-------PDAVTPPLLFSRNAYNA 61

Query: 75  IYMHDL 58
           + +  L
Sbjct: 62  LRLRRL 67

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>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5035

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -3

Query: 452  PDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVR 285
            P+PE+A AE   ++E VP P  E  +    P   P+   G SG G+   WG   V+
Sbjct: 4493 PEPEKADAE-NGEKEEVPKPPPEPPKKTAPPPPPPKKEEGGSG-GL-EFWGELEVQ 4545

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>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 703

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
 Frame = -3

Query: 485 PAARAGRG-RLPPDPER----AGAEAPAQQERVPDPGAEGAELDPGPQGRP-----EAMV 336
           P  R  +G R PP P      +G   P +      PG  G + +PGPQG P       + 
Sbjct: 146 PGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLK 205

Query: 335 GSSGTG 318
           G +G G
Sbjct: 206 GDNGVG 211

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>CO6A1_HUMAN (P12109) Collagen alpha-1(VI) chain precursor|
          Length = 1028

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 476 RAGRGRLPPDPERAGAEAPA--QQERVPDPGAEGAELDPGPQGRP 348
           R G   +P DP  AG   P   + +  P PG+EGA   PGP G P
Sbjct: 456 REGPVGVPGDPGEAGPIGPKGYRGDEGP-PGSEGARGAPGPAGPP 499

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>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
 Frame = -3

Query: 482 AARAGRGRLPPDPERAGAEAPAQQERVP-DPGAEGAE--------LDPGPQGRPE 345
           AA AGR   PP P    A +P++++R P D  A   E          P P G PE
Sbjct: 674 AAAAGRAPSPPPPGSEAAPSPSKRKRTPSDKSAHTVEHGSPRTRDPTPRPPGLPE 728

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>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 19/45 (42%), Positives = 19/45 (42%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGR 351
           P AR GRG  PP P RA   AP      P P   G    P P  R
Sbjct: 302 PPAR-GRGAPPPPPSRAPTAAPPP----PPPSRPGVGAPPPPPNR 341

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>COCA1_BOVIN (P25508) Collagen alpha-1(XII) chain (Fragments)|
          Length = 86

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 434 GAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 324
           G   P  + R   PG+ G+   PGP GRP    G SG
Sbjct: 52  GPPGPQGESRTGPPGSTGSRGPPGPPGRP----GDSG 84

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>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/56 (39%), Positives = 24/56 (42%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTG 318
           PAAR G G   P P + G   P   +  P PGA      PGP  RP A  G    G
Sbjct: 194 PAARPGPGGPRPGPAQGGPR-PGPGQGAPRPGA-----TPGP--RPAAAQGGPRPG 241

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>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
 Frame = -3

Query: 479 ARAGRGRLPPDPERAGAEA---------PAQQERVPDPGAEGAELDPGPQGRPEAMVGSS 327
           A+  RG  PP P   G  +         P ++ +   PGA+G    PGPQG P+ + G  
Sbjct: 349 AKGARG--PPGPPGGGEFSDGPPGPPGLPGREGQPGPPGADGYPGPPGPQG-PQGLPGGP 405

Query: 326 G 324
           G
Sbjct: 406 G 406

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>VM01_VACCV (P14356) Ankyrin repeat protein M1|
          Length = 421

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 477 GCGNSMACFIDGFASSLCFRRITSIGMDVRMVSSFG 584
           GCG  +AC      S   F++I SIG + R+V  FG
Sbjct: 116 GCGPLLACTDP---SERVFKKIMSIGFEARIVDKFG 148

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>COL2_CAEEL (P17656) Cuticle collagen 2 precursor|
          Length = 301

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTG 318
           PA  AG    P  P   G    ++Q    +PG  G    PGP G P    G+ GTG
Sbjct: 190 PAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAG---PPGPAG-PAGNDGAPGTG 241

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>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor|
          Length = 1355

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGT 321
           P    G G   P   R  + AP    +  +PGA G     GP G P  + G  GT
Sbjct: 585 PGESGGAGPHGPSGSRGPSGAPGPDGQKGEPGAAGLNGGLGPSG-PAGIPGERGT 638

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>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)|
          Length = 1362

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 324
           PA  +G   L  +P  AGA+  +  +   +PGA G    PGP G  E   GS+G
Sbjct: 333 PAGPSGARGLVGEPGPAGAKGESGNKG--EPGAAGPPGPPGPSGE-EGKRGSNG 383

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>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 359  GALGPVQRLLPRGQVHALAVRELPRQPVQDLVEGVPGLRGLREQHGL 499
            G++GPV  + PRG      +R    +P +    G+PGL+G     GL
Sbjct: 985  GSVGPVGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGL 1031

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>VM01_VACCC (P20640) Ankyrin repeat protein M1|
          Length = 472

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 477 GCGNSMACFIDGFASSLCFRRITSIGMDVRMVSSFG 584
           GCG  +AC      S   F++I SIG + R+V  FG
Sbjct: 167 GCGPLLACTDP---SERVFKKIMSIGFEARIVDKFG 199

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>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 359  GALGPVQRLLPRGQVHALAVRELPRQPVQDLVEGVPGLRGLREQHGL 499
            G++GPV  + PRG      +R    +P      G+PGL+G     GL
Sbjct: 991  GSVGPVGAVGPRGPSGPQGIRGDKGEPGDKGARGLPGLKGHNGLQGL 1037

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>RIR1_HCMVA (P16782) Ribonucleoside-diphosphate reductase large chain (EC|
           1.17.4.1) (Ribonucleotide reductase)
          Length = 906

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -3

Query: 491 AVPAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPG--PQGRPEAMVGSSGTG 318
           +VPA R   GR+P        E  + +      G + +EL+ G  P G  EA  G++   
Sbjct: 14  SVPAHRCRPGRIPSRSAETETEESSAEVAADTIGGDDSELEEGPLPGGDKEASAGNTNVS 73

Query: 317 IG 312
            G
Sbjct: 74  SG 75

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>N4BP1_HUMAN (O75113) NEDD4-binding protein 1 (N4BP1) (Fragment)|
          Length = 943

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 476 RAGRGRLPPDPERAGAEAPAQQERVPD--PGAEGAELDPGPQGRPEAMVGSSGTGIGAM 306
           R  R R PP P R  A A A +  + +    AE AEL    +GR E + G S   +GA+
Sbjct: 30  RGRRRRRPPAPPREAAPAMAARAVLDEFTAPAEKAELLEQSRGRIEGLFGVSLAVLGAL 88

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>INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)|
           (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase)
           (Phosphatidylinositol polyphosphate 5-phosphatase type
           IV)
          Length = 644

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = -3

Query: 491 AVPAARAGRGRLPPDPERAGAEAPAQQERVP------DPGAEGAELDPGPQGRP 348
           A PA RAG    PPD    G+E+PA     P      DP A  A + P P  RP
Sbjct: 30  APPAQRAGS---PPDAP--GSESPALACSTPATPSGEDPPARAAPIAPRPPARP 78

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>EGR4_HUMAN (Q05215) Early growth response protein 4 (EGR-4) (AT133)|
          Length = 486

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
 Frame = -3

Query: 461 RLPPDPERAGAEAPAQQERVPD-PGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVR 285
           +L P   R+ A A   +  V D PG+ G    P P   P     +     G   G+CS R
Sbjct: 310 QLSPLGLRSAAAADFPKPLVADIPGSSGVAAPPVPPPPPTPFPQAKARRKGRRGGKCSTR 369

Query: 284 TRCERTDE*AQPC 246
             C R    A  C
Sbjct: 370 CFCPRPHAKAFAC 382

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>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)|
          Length = 1670

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = -3

Query: 491  AVPAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMV 336
            A P    G    P  P   GA  P Q      PG+ G+   PGP G P + V
Sbjct: 1212 AGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHV 1263

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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 485 PAARAGRGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQG-RPEAMVGSSG 324
           P     RG  PP P  A   AP Q+    +PG  GA+ +PG +G R EA  GS G
Sbjct: 406 PGLLGARG--PPGPAGANG-APGQRGPSGEPGKNGAKGEPGARGERGEA--GSPG 455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,004,915
Number of Sequences: 219361
Number of extensions: 1645624
Number of successful extensions: 8332
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 6032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8011
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result