ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4k19 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ512944.1|HVU512944 Hordeum vulgare cor14b gene for cold regulated protein Length = 1395 Score = 527 bits (266), Expect = e-147 Identities = 266/266 (100%) Strand = Plus / Minus Query: 1 aatgacgagacccacaaaacagacactagcatgcacaccatgcaggttcaatgttcagac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1352 aatgacgagacccacaaaacagacactagcatgcacaccatgcaggttcaatgttcagac 1293 Query: 61 ggcaaatgttgagctcatttgctcacatcctcaaccgcggcggcgacgttgtcggcgacg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1292 ggcaaatgttgagctcatttgctcacatcctcaaccgcggcggcgacgttgtcggcgacg 1233 Query: 121 ctctgcgcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctgcccg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1232 ctctgcgcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctgcccg 1173 Query: 181 ccgaggtcctgcgcggtctcgctcaccttgctcgcgccatccttggccgcgtccaccacg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1172 ccgaggtcctgcgcggtctcgctcaccttgctcgcgccatccttggccgcgtccaccacg 1113 Query: 241 ctctcgccggcgctcttggcgccctc 266 |||||||||||||||||||||||||| Sbjct: 1112 ctctcgccggcgctcttggcgccctc 1087
>gb|M60732.1|BLYCLDAA Hordeum vulgare cold-regulated mRNA, 3' end Length = 653 Score = 527 bits (266), Expect = e-147 Identities = 266/266 (100%) Strand = Plus / Minus Query: 1 aatgacgagacccacaaaacagacactagcatgcacaccatgcaggttcaatgttcagac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 586 aatgacgagacccacaaaacagacactagcatgcacaccatgcaggttcaatgttcagac 527 Query: 61 ggcaaatgttgagctcatttgctcacatcctcaaccgcggcggcgacgttgtcggcgacg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 526 ggcaaatgttgagctcatttgctcacatcctcaaccgcggcggcgacgttgtcggcgacg 467 Query: 121 ctctgcgcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctgcccg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 466 ctctgcgcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctgcccg 407 Query: 181 ccgaggtcctgcgcggtctcgctcaccttgctcgcgccatccttggccgcgtccaccacg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 ccgaggtcctgcgcggtctcgctcaccttgctcgcgccatccttggccgcgtccaccacg 347 Query: 241 ctctcgccggcgctcttggcgccctc 266 |||||||||||||||||||||||||| Sbjct: 346 ctctcgccggcgctcttggcgccctc 321
>gb|AF491837.1| Triticum aestivum cultivar Fredrick WCOR14c mRNA, complete cds Length = 604 Score = 168 bits (85), Expect = 6e-39 Identities = 118/129 (91%) Strand = Plus / Minus Query: 62 gcaaatgttgagctcatttgctcacatcctcaaccgcggcggcgacgttgtcggcgacgc 121 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 436 gcaaatgttgagctcatttgctcacatcctcaaccgcggcggtgacgtcgtcggcgacgc 377 Query: 122 tctgcgcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctgcccgc 181 ||| |||||||| ||||||||||||||||| ||||||| ||||||||| |||| | ||| Sbjct: 376 cctgtgcggcgtctttggtggcgtcccacgcctcctccgtcgcctgcttcgccttctcgc 317 Query: 182 cgaggtcct 190 | ||||||| Sbjct: 316 ccaggtcct 308
>gb|AF491838.1| Triticum aestivum cultivar Fredrick WCOR14a mRNA, complete cds Length = 645 Score = 161 bits (81), Expect = 1e-36 Identities = 117/129 (90%) Strand = Plus / Minus Query: 62 gcaaatgttgagctcatttgctcacatcctcaaccgcggcggcgacgttgtcggcgacgc 121 ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| Sbjct: 436 gcaaatgttgagctcatttgctcacatcctcgaccgcggcggtcacgttgtcggcggcgc 377 Query: 122 tctgcgcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctgcccgc 181 |||||||||||| |||||||| |||||||| ||||||| ||||||||| |||| | ||| Sbjct: 376 cctgcgcggcgtctttggtggcatcccacgcctcctccgtcgcctgcttcgccttctcgc 317 Query: 182 cgaggtcct 190 ||||||||| Sbjct: 316 cgaggtcct 308 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 1 aatgacgagacccacaaaacagacactagcatgcacaccatgca 44 ||||| ||||||||||||||||||||| ||||||||| |||||| Sbjct: 517 aatgatgagacccacaaaacagacactcgcatgcacatcatgca 474
>gb|AF207546.1|AF207546 Triticum aestivum cultivar Mironovska 808 cold-responsive protein COR14b (cor14b) mRNA, complete cds Length = 576 Score = 161 bits (81), Expect = 1e-36 Identities = 118/129 (91%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 62 gcaaatgttgagctcatttgctcacatcctcaaccgcggcggcgacgttgtcggcgacgc 121 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 508 gcaaatgttgagctcatttgctcacatcctcaaccgcggcggtgacgtcgtcggcgacgc 449 Query: 122 tctgcgcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctgcccgc 181 ||| |||||||| ||||||||||||||||| ||||||| ||||||||| |||| | ||| Sbjct: 448 cctgtgcggcgtctttggtggcgtcccacgc-tcctccgtcgcctgcttcgccttctcgc 390 Query: 182 cgaggtcct 190 | ||||||| Sbjct: 389 ccaggtcct 381
>gb|AF207545.1|AF207545 Triticum aestivum cultivar Mironovska 808 cold-responsive protein COR14a (cor14a) mRNA, complete cds Length = 638 Score = 161 bits (81), Expect = 1e-36 Identities = 117/129 (90%) Strand = Plus / Minus Query: 62 gcaaatgttgagctcatttgctcacatcctcaaccgcggcggcgacgttgtcggcgacgc 121 ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| Sbjct: 501 gcaaatgttgagctcatttgctcacatcctcgaccgcggcggtcacgttgtcggcggcgc 442 Query: 122 tctgcgcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctgcccgc 181 |||||||||||| |||||||| |||||||| ||||||| ||||||||| |||| | ||| Sbjct: 441 cctgcgcggcgtctttggtggcatcccacgcctcctccgtcgcctgcttcgccttctcgc 382 Query: 182 cgaggtcct 190 ||||||||| Sbjct: 381 cgaggtcct 373 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 1 aatgacgagacccacaaaacagacactagcatgcacaccatgca 44 ||||| ||||||||||||||||||||| ||||||||| |||||| Sbjct: 582 aatgatgagacccacaaaacagacactcgcatgcacatcatgca 539
>gb|AF491839.1| Secale cereale cultivar Musketeer REP13 mRNA, complete cds Length = 700 Score = 159 bits (80), Expect = 5e-36 Identities = 107/116 (92%) Strand = Plus / Minus Query: 75 tcatttgctcacatcctcaaccgcggcggcgacgttgtcggcgacgctctgcgcggcgtc 134 ||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| || Sbjct: 483 tcatttgctcacatcgtcaaccgcggcggccacgttgtcggcgacgccctgcgcggcctc 424 Query: 135 cttggtggcgtcccacgcttcctccgccgcctgcttggcctgcccgccgaggtcct 190 |||||||||||||||||| ||||| | |||||||||||||| || ||||||||||| Sbjct: 423 cttggtggcgtcccacgcctcctcagtcgcctgcttggccttccggccgaggtcct 368 Score = 61.9 bits (31), Expect = 9e-07 Identities = 40/43 (93%) Strand = Plus / Minus Query: 9 gacccacaaaacagacactagcatgcacaccatgcaggttcaa 51 ||||||||||||||||||| ||||||||| |||||| |||||| Sbjct: 573 gacccacaaaacagacactcgcatgcacatcatgcatgttcaa 531
>gb|L13437.2|WHTWSC19AA Triticum aestivum cold acclimation protein WCS19 mRNA, complete cds Length = 657 Score = 79.8 bits (40), Expect = 4e-12 Identities = 82/96 (85%) Strand = Plus / Minus Query: 95 ccgcggcggcgacgttgtcggcgacgctctgcgcggcgtccttggtggcgtcccacgctt 154 ||||||||||||| ||||| | || || ||| ||||||||||||| | |||||||||| | Sbjct: 472 ccgcggcggcgactttgtccgtgatgccctgtgcggcgtccttggcgccgtcccacgcct 413 Query: 155 cctccgccgcctgcttggcctgcccgccgaggtcct 190 |||||| ||||| ||| |||||| |||||| ||||| Sbjct: 412 cctccgtcgccttcttcgcctgctcgccgaagtcct 377
>ref|XM_473850.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 825 Score = 75.8 bits (38), Expect = 6e-11 Identities = 92/110 (83%) Strand = Plus / Minus Query: 117 gacgctctgcgcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctg 176 ||||| |||||| || |||||||||||| ||||||| ||| |||||||||||| |||| Sbjct: 708 gacgccctgcgccgcctccttggtggcgccccacgcgccctgcgccgcctgcttcgcctt 649 Query: 177 cccgccgaggtcctgcgcggtctcgctcaccttgctcgcgccatccttgg 226 | |||||| | ||||||| ||||| |||||||||||| || ||||||| Sbjct: 648 ctcgccgatggcctgcgccgtctccaccaccttgctcgccccttccttgg 599
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 75.8 bits (38), Expect = 6e-11 Identities = 92/110 (83%) Strand = Plus / Minus Query: 117 gacgctctgcgcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctg 176 ||||| |||||| || |||||||||||| ||||||| ||| |||||||||||| |||| Sbjct: 83107 gacgccctgcgccgcctccttggtggcgccccacgcgccctgcgccgcctgcttcgcctt 83048 Query: 177 cccgccgaggtcctgcgcggtctcgctcaccttgctcgcgccatccttgg 226 | |||||| | ||||||| ||||| |||||||||||| || ||||||| Sbjct: 83047 ctcgccgatggcctgcgccgtctccaccaccttgctcgccccttccttgg 82998
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 75.8 bits (38), Expect = 6e-11 Identities = 92/110 (83%) Strand = Plus / Minus Query: 117 gacgctctgcgcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctg 176 ||||| |||||| || |||||||||||| ||||||| ||| |||||||||||| |||| Sbjct: 30985734 gacgccctgcgccgcctccttggtggcgccccacgcgccctgcgccgcctgcttcgcctt 30985675 Query: 177 cccgccgaggtcctgcgcggtctcgctcaccttgctcgcgccatccttgg 226 | |||||| | ||||||| ||||| |||||||||||| || ||||||| Sbjct: 30985674 ctcgccgatggcctgcgccgtctccaccaccttgctcgccccttccttgg 30985625 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cctcaaccgcggcggcgacg 108 |||||||||||||||||||| Sbjct: 19616280 cctcaaccgcggcggcgacg 19616299
>dbj|AK073109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022D23, full insert sequence Length = 1075 Score = 75.8 bits (38), Expect = 6e-11 Identities = 92/110 (83%) Strand = Plus / Minus Query: 117 gacgctctgcgcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctg 176 ||||| |||||| || |||||||||||| ||||||| ||| |||||||||||| |||| Sbjct: 786 gacgccctgcgccgcctccttggtggcgccccacgcgccctgcgccgcctgcttcgcctt 727 Query: 177 cccgccgaggtcctgcgcggtctcgctcaccttgctcgcgccatccttgg 226 | |||||| | ||||||| ||||| |||||||||||| || ||||||| Sbjct: 726 ctcgccgatggcctgcgccgtctccaccaccttgctcgccccttccttgg 677
>dbj|AB095006.1| Triticum aestivum Wcor15 gene for chloroplast-targeted COR protein, complete cds Length = 4549 Score = 63.9 bits (32), Expect = 2e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 127 gcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctgcccgccgagg 186 ||||||||||||| | |||||||||| ||||||| ||||| ||| |||||| |||||| | Sbjct: 3245 gcggcgtccttggcgccgtcccacgcctcctccgtcgccttcttcgcctgctcgccgaag 3186 Query: 187 tcct 190 |||| Sbjct: 3185 tcct 3182
>gb|AF491840.1| Secale cereale cultivar Musketeer REP14 mRNA, complete cds Length = 613 Score = 56.0 bits (28), Expect = 6e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 127 gcggcgtccttggtggcgtcccacgcttcctccgccgcctgcttggcctgcccgccgagg 186 ||||||||||||| | |||||||||| ||||||| ||||| ||| |||||| | |||| | Sbjct: 438 gcggcgtccttggcgccgtcccacgcctcctccgtcgccttcttcgcctgctccccgaag 379 Query: 187 tcct 190 |||| Sbjct: 378 tcct 375
>ref|XM_692965.1| PREDICTED: Danio rerio similar to Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (LOC569568), mRNA Length = 2328 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Minus Query: 151 gcttcctccgccgcctgcttggcctg 176 |||||||| ||||||||||||||||| Sbjct: 1888 gcttcctctgccgcctgcttggcctg 1863
>emb|BX664706.9| Zebrafish DNA sequence from clone CH211-251F6 in linkage group 20, complete sequence Length = 103574 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Minus Query: 151 gcttcctccgccgcctgcttggcctg 176 |||||||| ||||||||||||||||| Sbjct: 103167 gcttcctctgccgcctgcttggcctg 103142
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 95 ccgcggcggcgacgttgtcggcgacg 120 ||||||||||||||||| |||||||| Sbjct: 2734539 ccgcggcggcgacgttggcggcgacg 2734564
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 tctcgctcaccttgctcgcgc 217 ||||||||||||||||||||| Sbjct: 956109 tctcgctcaccttgctcgcgc 956129
>ref|XM_843091.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0489) partial mRNA Length = 3429 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 tctcgctcaccttgctcgcgc 217 ||||||||||||||||||||| Sbjct: 2059 tctcgctcaccttgctcgcgc 2039
>gb|AC145810.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0059C14, complete sequence Length = 142138 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 acatcctcaaccgcggcggcgacg 108 |||||||| ||||||||||||||| Sbjct: 44006 acatcctcgaccgcggcggcgacg 44029
>gb|AC107698.8| Mus musculus chromosome 1, clone RP24-496A5, complete sequence Length = 159888 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 acagacactagcatgcacac 38 |||||||||||||||||||| Sbjct: 147100 acagacactagcatgcacac 147119
>gb|AY619528.1| Daphnia pulicaria clone WFms0000520 microsatellite marker Dp503 sequence Length = 180 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 gcggcggcgacgttgtcggcgacg 120 ||||||||||||||||| |||||| Sbjct: 147 gcggcggcgacgttgtcagcgacg 124
>ref|XM_366219.1| Magnaporthe grisea 70-15 hypothetical protein (MG10438.4) partial mRNA Length = 1797 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 tccgccgcctgcttggcctgcccg 180 ||||||||||||| |||||||||| Sbjct: 1010 tccgccgcctgctcggcctgcccg 1033
>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome 15 Length = 755217 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cacaaaacagacactagcat 32 |||||||||||||||||||| Sbjct: 579813 cacaaaacagacactagcat 579832
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ggcggcgacgttgtcggcga 118 |||||||||||||||||||| Sbjct: 2037181 ggcggcgacgttgtcggcga 2037200
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 cccgccgaggtcctgcgcgg 196 |||||||||||||||||||| Sbjct: 2238922 cccgccgaggtcctgcgcgg 2238941
>emb|X66407.1|RRPHAS R.ruber ORF1, phbCRr, ORF3 and ORF4 Length = 3875 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 acatcctcaaccgcggcggc 104 |||||||||||||||||||| Sbjct: 1258 acatcctcaaccgcggcggc 1277
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 cgacgttgtcggcgacgctc 123 |||||||||||||||||||| Sbjct: 2531491 cgacgttgtcggcgacgctc 2531472
>gb|BT009424.1| Triticum aestivum clone wlmk1.pk0020.a9:fis, full insert mRNA sequence Length = 1003 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 tctcgccggcgctcttggcg 261 |||||||||||||||||||| Sbjct: 78 tctcgccggcgctcttggcg 59
>gb|AY186194.1| Rhesus cytomegalovirus strain 68-1, complete genome Length = 221454 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 cggcgacgctctgcgcggcg 132 |||||||||||||||||||| Sbjct: 152413 cggcgacgctctgcgcggcg 152394
>gb|DQ120516.1| Cercopithecine herpesvirus 8 isolate CMV 180.92, complete genome Length = 215678 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 cggcgacgctctgcgcggcg 132 |||||||||||||||||||| Sbjct: 152202 cggcgacgctctgcgcggcg 152183
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgaggtcctgcgcggtctcg 201 |||||||||||||||||||| Sbjct: 1424074 cgaggtcctgcgcggtctcg 1424055
>emb|AJ001109.1|HSUBE3A10 Homo sapiens UBE3A gene, exon 10 Length = 542 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cacaaaacagacactagcat 32 |||||||||||||||||||| Sbjct: 132 cacaaaacagacactagcat 113
>gb|AC124997.4| Homo sapiens chromosome 15, clone RP11-466L14, complete sequence Length = 179810 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cacaaaacagacactagcat 32 |||||||||||||||||||| Sbjct: 4422 cacaaaacagacactagcat 4441
>gb|AC100774.2| Homo sapiens chromosome , clone RP13-487P22, complete sequence Length = 183426 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cacaaaacagacactagcat 32 |||||||||||||||||||| Sbjct: 157119 cacaaaacagacactagcat 157138
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ccgcggcggcgacgttgtcg 114 |||||||||||||||||||| Sbjct: 157620 ccgcggcggcgacgttgtcg 157601
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 97 gcggcggcgacgttgtcggcgacgctct 124 ||||||||||||||||||| | |||||| Sbjct: 23133910 gcggcggcgacgttgtcggaggcgctct 23133937
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 acatcctcaaccgcggcggcgacg 108 |||||||| ||||||||||||||| Sbjct: 8745235 acatcctcgaccgcggcggcgacg 8745258
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 gcggcggcgacgttgtcggc 116 |||||||||||||||||||| Sbjct: 19610531 gcggcggcgacgttgtcggc 19610550
>ref|XM_218965.3| PREDICTED: Rattus norvegicus FCH and double SH3 domains 2 (predicted) (Fchsd2_predicted), mRNA Length = 4297 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cacaaaacagacactagcat 32 |||||||||||||||||||| Sbjct: 1925 cacaaaacagacactagcat 1906
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 catcctcaaccgcggcggcg 105 |||||||||||||||||||| Sbjct: 2482792 catcctcaaccgcggcggcg 2482811
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgaggtcctgcgcggtctcg 201 |||||||||||||||||||| Sbjct: 7428354 cgaggtcctgcgcggtctcg 7428335
>dbj|AP004794.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0506C10 Length = 150549 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 gcggcggcgacgttgtcggc 116 |||||||||||||||||||| Sbjct: 92263 gcggcggcgacgttgtcggc 92282
>dbj|AK107273.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-A02, full insert sequence Length = 1513 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 acatcctcaaccgcggcggcgacg 108 |||||||| ||||||||||||||| Sbjct: 369 acatcctcgaccgcggcggcgacg 392
>emb|AM261428.1| Sporobolus stapfianus mRNA for putative group 3 late embryogenesis abundant protein (dg2i gene) Length = 1089 Score = 40.1 bits (20), Expect = 3.5 Identities = 56/68 (82%) Strand = Plus / Minus Query: 159 cgccgcctgcttggcctgcccgccgaggtcctgcgcggtctcgctcaccttgctcgcgcc 218 ||||||||||||||||| | ||||| |||||| |||||||| | ||||| | ||||| Sbjct: 743 cgccgcctgcttggccttctcgccggcctcctgcacggtctcggccgccttgttggcgcc 684 Query: 219 atccttgg 226 ||||||| Sbjct: 683 ctccttgg 676
>gb|AY108945.1| Zea mays PCO115123 mRNA sequence Length = 1210 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 tctcgccggcgctcttggcg 261 |||||||||||||||||||| Sbjct: 107 tctcgccggcgctcttggcg 88
>gb|AC004600.2|AC004600 Homo sapiens Chromosome 15q11-q13 PAC clone pDJ373b1 containing Angelman Syndrome gene (UBE3A), complete sequence Length = 133863 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cacaaaacagacactagcat 32 |||||||||||||||||||| Sbjct: 33561 cacaaaacagacactagcat 33580
>gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, complete sequence Length = 178509 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 acagacactagcatgcacac 38 |||||||||||||||||||| Sbjct: 177405 acagacactagcatgcacac 177386
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 gcttggcctgcccgccgagg 186 |||||||||||||||||||| Sbjct: 2461786 gcttggcctgcccgccgagg 2461767
>gb|AF079496.1|AF079496 Rhesus cytomegalovirus strain 68-1 hypothetical protein UL117 (UL117) gene, partial cds Length = 515 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cggcgacgctctgcgcggcg 132 |||||||||||||||||||| Sbjct: 313 cggcgacgctctgcgcggcg 332
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 cgcggcggcgacgttgtcggcgac 119 |||||||||||||| ||||||||| Sbjct: 1951244 cgcggcggcgacgtggtcggcgac 1951221
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 acatcctcaaccgcggcggcgacg 108 |||||||| ||||||||||||||| Sbjct: 8815998 acatcctcgaccgcggcggcgacg 8816021
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 97 gcggcggcgacgttgtcggcgacgctct 124 ||||||||||||||||||| | |||||| Sbjct: 23062101 gcggcggcgacgttgtcggaggcgctct 23062128
>gb|AC004259.1|AC004259 Human Chromosome 15q11-q13 PAC clone pDJ14i12 containing Angelman Syndrome gene (UBE3A), complete sequence Length = 118684 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 cacaaaacagacactagcat 32 |||||||||||||||||||| Sbjct: 12704 cacaaaacagacactagcat 12723
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cctcaaccgcggcggcgacg 108 |||||||||||||||||||| Sbjct: 67006 cctcaaccgcggcggcgacg 67025
>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135323 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 97 gcggcggcgacgttgtcggcgacgctct 124 ||||||||||||||||||| | |||||| Sbjct: 44487 gcggcggcgacgttgtcggaggcgctct 44460
>gb|AF016706.1|HSUBE3AL4 Homo sapiens E6-AP ubiquitin-protein ligase (UBE3A) gene, exon 4 Length = 1202 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cacaaaacagacactagcat 32 |||||||||||||||||||| Sbjct: 325 cacaaaacagacactagcat 306 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,778,910 Number of Sequences: 3902068 Number of extensions: 1778910 Number of successful extensions: 37766 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36971 Number of HSP's gapped (non-prelim): 795 length of query: 266 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 244 effective length of database: 17,147,199,772 effective search space: 4183916744368 effective search space used: 4183916744368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
