ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4k17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT013271.1| Lycopersicon esculentum clone 134844R, mRNA sequence 38 9.8
2emb|AL133420.28| Human DNA sequence from clone RP5-904D7 on chro... 38 9.8
3emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 38 9.8

>gb|BT013271.1| Lycopersicon esculentum clone 134844R, mRNA sequence
          Length = 1419

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 77  gcatgtctgaagttgttga 95
           |||||||||||||||||||
Sbjct: 236 gcatgtctgaagttgttga 254



to top

>emb|AL133420.28| Human DNA sequence from clone RP5-904D7 on chromosome 20 Contains ESTs,
             STSs and GSSs, complete sequence
          Length = 84722

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 46    cacaggatgaactctcgca 64
             |||||||||||||||||||
Sbjct: 60468 cacaggatgaactctcgca 60486



to top

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 71      cgggcggcatgtctgaagttgtt 93
               |||| ||||||||||||||||||
Sbjct: 3006886 cgggtggcatgtctgaagttgtt 3006864


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 855,910
Number of Sequences: 3902068
Number of extensions: 855910
Number of successful extensions: 60828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60814
Number of HSP's gapped (non-prelim): 14
length of query: 198
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 176
effective length of database: 17,147,199,772
effective search space: 3017907159872
effective search space used: 3017907159872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top