ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4k16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC113334.2| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
2gb|AC129719.2| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
4dbj|AK061526.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
5dbj|AK061071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
6gb|AC156998.1| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
7gb|AY106949.1| Zea mays PCO090844 mRNA sequence 48 0.029
8ref|NM_002911.3| Homo sapiens UPF1 regulator of nonsense transcr... 46 0.11
9gb|BC039817.1| Homo sapiens UPF1 regulator of nonsense transcrip... 46 0.11
10gb|AC004517.1|AC004517 Homo sapiens chromosome 19, cosmid F19807... 46 0.11
11gb|AC003972.1|AC003972 Homo sapiens DNA from chromosome 19, cosm... 46 0.11
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
13dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
14dbj|AK102319.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.45
15emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.8
16emb|BX640433.1| Bordetella parapertussis strain 12822, complete ... 42 1.8
17gb|AC013701.6| Homo sapiens, clone RP11-22C8, complete sequence 42 1.8
18gb|AC044893.5| Homo sapiens chromosome 8, clone RP11-696E24, com... 42 1.8
19emb|BX831605.1|CNS09ZQ4 Arabidopsis thaliana Full-length cDNA Co... 42 1.8
20emb|BX830747.1|CNS09ZGY Arabidopsis thaliana Full-length cDNA Co... 42 1.8
21gb|AC148880.2| Chlamydomonas reinhardtii clone cr-40F11, complet... 40 7.0
22gb|AC069008.6| Homo sapiens BAC clone RP11-815N20 from 7, comple... 40 7.0
23gb|AC127421.3| Mus musculus BAC clone RP24-314F1 from chromosome... 40 7.0
24gb|AC116998.3| Mus musculus BAC clone RP23-16F6 from 18, complet... 40 7.0
25emb|AL160279.21| Human DNA sequence from clone RP11-65B23 on chr... 40 7.0
26emb|AL136114.14| Human DNA sequence from clone RP11-63B19 on chr... 40 7.0
27emb|AL604024.7| Mouse DNA sequence from clone RP23-421F23 on chr... 40 7.0
28gb|AC092377.3| Homo sapiens chromosome 16 clone RP11-680G10, com... 40 7.0
29emb|CR523103.1| Gallus gallus finished cDNA, clone ChEST215j20 40 7.0
30gb|AC023781.5| Homo sapiens chromosome 8, clone RP11-149P24, com... 40 7.0
31gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.0
32gb|AC129933.13| Mus musculus chromosome 1, clone RP23-234P14, co... 40 7.0
33gb|AC130686.15| Homo sapiens chromosome 17, clone RP13-415G19, c... 40 7.0
34gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.0
35gb|AC105208.15| Homo sapiens chromosome 17, clone CTD-3226O14, c... 40 7.0
36gb|AC013399.6| Homo sapiens BAC clone RP11-69O6 from 2, complete... 40 7.0
37gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, com... 40 7.0
38gb|AC099698.14| Mus musculus chromosome 5, clone RP23-415O9, com... 40 7.0
39gb|AC154480.2| Mus musculus BAC clone RP24-135M1 from 13, comple... 40 7.0
40gb|U87283.1|RCU87283 Rhodobacter capsulatus LysR-type transcript... 40 7.0
41emb|BX295537.1| Platypus DNA sequence from clone XX-200B24, comp... 40 7.0
42gb|AC169518.1| Mus musculus chromosome 8, clone RP23-454H8, comp... 40 7.0
43emb|AL928560.6| Mouse DNA sequence from clone RP23-353N23 on chr... 40 7.0 
>gb|AC113334.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_F01,
             complete sequence
          Length = 118799

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                           
Query: 455   tttcctgcctgatcatctccaccagatggttttggagctccccagc 500
             ||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 95778 tttcctgcctggtcatctccaccagaaggttttggcgctccccagc 95733



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 180   ccttgtcccaggaactgccgccaccgccgccttgg 214
             ||||||||||||| ||||||||||| || ||||||
Sbjct: 96161 ccttgtcccaggagctgccgccaccacctccttgg 96127
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>gb|AC129719.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
           OSJNBb0013J02, complete sequence
          Length = 118026

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                         
Query: 455 tttcctgcctgatcatctccaccagatggttttggagctccccagc 500
           ||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 680 tttcctgcctggtcatctccaccagaaggttttggcgctccccagc 635



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 180  ccttgtcccaggaactgccgccaccgccgccttgg 214
            ||||||||||||| ||||||||||| || ||||||
Sbjct: 1063 ccttgtcccaggagctgccgccaccacctccttgg 1029
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                              
Query: 455      tttcctgcctgatcatctccaccagatggttttggagctccccagc 500
                ||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 24813795 tttcctgcctggtcatctccaccagaaggttttggcgctccccagc 24813750



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 180      ccttgtcccaggaactgccgccaccgccgccttgg 214
                ||||||||||||| ||||||||||| || ||||||
Sbjct: 24814178 ccttgtcccaggagctgccgccaccacctccttgg 24814144
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>dbj|AK061526.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D08, full
           insert sequence
          Length = 1091

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                         
Query: 455 tttcctgcctgatcatctccaccagatggttttggagctccccagc 500
           ||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 441 tttcctgcctggtcatctccaccagaaggttttggcgctccccagc 396



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 180 ccttgtcccaggaactgccgccaccgccgccttgg 214
           ||||||||||||| ||||||||||| || ||||||
Sbjct: 824 ccttgtcccaggagctgccgccaccacctccttgg 790
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>dbj|AK061071.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C09, full
           insert sequence
          Length = 1149

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                         
Query: 455 tttcctgcctgatcatctccaccagatggttttggagctccccagc 500
           ||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 381 tttcctgcctggtcatctccaccagaaggttttggcgctccccagc 336



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 180 ccttgtcccaggaactgccgccaccgccgccttgg 214
           ||||||||||||| ||||||||||| || ||||||
Sbjct: 764 ccttgtcccaggagctgccgccaccacctccttgg 730
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>gb|AC156998.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086B08,
              complete sequence
          Length = 148274

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                            
Query: 455    tttcctgcctgatcatctccaccagatggttttggagctccccagc 500
              ||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 140294 tttcctgcctggtcatctccaccagaaggttttggcgctccccagc 140249



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 180    ccttgtcccaggaactgccgccaccgccgccttgg 214
              ||||||||||||| ||||||||||| || ||||||
Sbjct: 140677 ccttgtcccaggagctgccgccaccacctccttgg 140643
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>gb|AY106949.1| Zea mays PCO090844 mRNA sequence
          Length = 482

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 453 tctttcctgcctgatcatctccaccaga 480
           ||||||||||||| ||||||||||||||
Sbjct: 206 tctttcctgcctggtcatctccaccaga 179
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>ref|NM_002911.3| Homo sapiens UPF1 regulator of nonsense transcripts homolog (yeast)
           (UPF1), mRNA
          Length = 5360

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 188 caggaactgccgccaccgccgcc 210
           |||||||||||||||||||||||
Sbjct: 32  caggaactgccgccaccgccgcc 10
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>gb|BC039817.1| Homo sapiens UPF1 regulator of nonsense transcripts homolog
           (yeast), mRNA (cDNA clone MGC:48687 IMAGE:5555509),
           complete cds
          Length = 5357

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 188 caggaactgccgccaccgccgcc 210
           |||||||||||||||||||||||
Sbjct: 29  caggaactgccgccaccgccgcc 7
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>gb|AC004517.1|AC004517 Homo sapiens chromosome 19, cosmid F19807, complete sequence
          Length = 44062

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 188   caggaactgccgccaccgccgcc 210
             |||||||||||||||||||||||
Sbjct: 31454 caggaactgccgccaccgccgcc 31432
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>gb|AC003972.1|AC003972 Homo sapiens DNA from chromosome 19, cosmid R33485 containing
           pNORF1, complete sequence
          Length = 42667

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 188 caggaactgccgccaccgccgcc 210
           |||||||||||||||||||||||
Sbjct: 647 caggaactgccgccaccgccgcc 625
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 196      gccgccaccgccgccttggcccccgc 221
                |||||||||||||||||| |||||||
Sbjct: 24580976 gccgccaccgccgccttgccccccgc 24580951
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>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1040D09
          Length = 148102

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 196  gccgccaccgccgccttggcccccgc 221
            |||||||||||||||||| |||||||
Sbjct: 6939 gccgccaccgccgccttgccccccgc 6914
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>dbj|AK102319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090G17, full
           insert sequence
          Length = 1451

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 196 gccgccaccgccgccttggcccccgc 221
           |||||||||||||||||| |||||||
Sbjct: 409 gccgccaccgccgccttgccccccgc 384
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>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 196    gccgccaccgccgccttggcc 216
              |||||||||||||||||||||
Sbjct: 190252 gccgccaccgccgccttggcc 190272
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>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 196    gccgccaccgccgccttggcc 216
              |||||||||||||||||||||
Sbjct: 126742 gccgccaccgccgccttggcc 126762
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>gb|AC013701.6| Homo sapiens, clone RP11-22C8, complete sequence
          Length = 160275

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 113    taccacccactaccaccatcactgc 137
              ||||||||||||||||||| |||||
Sbjct: 124006 taccacccactaccaccattactgc 123982
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>gb|AC044893.5| Homo sapiens chromosome 8, clone RP11-696E24, complete sequence
          Length = 190121

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 113   taccacccactaccaccatcactgc 137
             ||||||||||||||||||| |||||
Sbjct: 21367 taccacccactaccaccattactgc 21343
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>emb|BX831605.1|CNS09ZQ4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH18ZD11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1941

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 191  gaactgccgccaccgccgcct 211
            |||||||||||||||||||||
Sbjct: 1609 gaactgccgccaccgccgcct 1629
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>emb|BX830747.1|CNS09ZGY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS1ZC10 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1742

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 191  gaactgccgccaccgccgcct 211
            |||||||||||||||||||||
Sbjct: 1391 gaactgccgccaccgccgcct 1411
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>gb|AC148880.2| Chlamydomonas reinhardtii clone cr-40F11, complete sequence
          Length = 56458

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   actgccgccaccgccgcctt 212
             ||||||||||||||||||||
Sbjct: 36886 actgccgccaccgccgcctt 36905
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>gb|AC069008.6| Homo sapiens BAC clone RP11-815N20 from 7, complete sequence
          Length = 90252

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   tgccaggaggagcaccccac 385
             ||||||||||||||||||||
Sbjct: 18770 tgccaggaggagcaccccac 18751
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>gb|AC127421.3| Mus musculus BAC clone RP24-314F1 from chromosome 18, complete sequence
          Length = 170221

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   atcttcattgctctttcccc 320
             ||||||||||||||||||||
Sbjct: 80726 atcttcattgctctttcccc 80745
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>gb|AC116998.3| Mus musculus BAC clone RP23-16F6 from 18, complete sequence
          Length = 216959

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   atcttcattgctctttcccc 320
             ||||||||||||||||||||
Sbjct: 72104 atcttcattgctctttcccc 72123
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>emb|AL160279.21| Human DNA sequence from clone RP11-65B23 on chromosome 9 Contains the
             3' end of the DAPK1 gene for death-associated protein
             kinase 1, the CTSL gene for cathepsin L, a ,eukaryotic
             translation initiation factor 3, subunit 1 alpha, 35kDa
             (EIF3S1) pseudogene, a cathepsin pseudogene and two CpG
             islands, complete sequence
          Length = 170240

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   tggcttgttttgactccagg 437
             ||||||||||||||||||||
Sbjct: 75114 tggcttgttttgactccagg 75095
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>emb|AL136114.14| Human DNA sequence from clone RP11-63B19 on chromosome 1, complete
              sequence
          Length = 127892

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    accacccactaccaccatca 133
              ||||||||||||||||||||
Sbjct: 115630 accacccactaccaccatca 115649
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>emb|AL604024.7| Mouse DNA sequence from clone RP23-421F23 on chromosome 11 Contains
            part of the Bcas3 gene for breast carcinoma amplified
            sequence 3, complete sequence
          Length = 217278

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 318  cccatgatcctcctccacct 337
            ||||||||||||||||||||
Sbjct: 4677 cccatgatcctcctccacct 4658
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>gb|AC092377.3| Homo sapiens chromosome 16 clone RP11-680G10, complete sequence
          Length = 207283

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   tagtgttgccaggaggagca 379
             ||||||||||||||||||||
Sbjct: 68108 tagtgttgccaggaggagca 68089
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>emb|CR523103.1| Gallus gallus finished cDNA, clone ChEST215j20
          Length = 1024

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 360 tagtgttgccaggaggagca 379
           ||||||||||||||||||||
Sbjct: 687 tagtgttgccaggaggagca 706
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>gb|AC023781.5| Homo sapiens chromosome 8, clone RP11-149P24, complete sequence
          Length = 147607

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   ccactaccaccatcactgcc 138
             ||||||||||||||||||||
Sbjct: 57181 ccactaccaccatcactgcc 57200
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     gccgccaccgccgccttggc 215
               ||||||||||||||||||||
Sbjct: 2387673 gccgccaccgccgccttggc 2387692
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>gb|AC129933.13| Mus musculus chromosome 1, clone RP23-234P14, complete sequence
          Length = 247595

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    ccactaccaccatcactgcc 138
              ||||||||||||||||||||
Sbjct: 114462 ccactaccaccatcactgcc 114481
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>gb|AC130686.15| Homo sapiens chromosome 17, clone RP13-415G19, complete sequence
          Length = 208462

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    ccactaccaccatcactgcc 138
              ||||||||||||||||||||
Sbjct: 115059 ccactaccaccatcactgcc 115078
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 197    ccgccaccgccgccttggcccccg 220
              ||||||||||||||| ||||||||
Sbjct: 483166 ccgccaccgccgcctcggcccccg 483189
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>gb|AC105208.15| Homo sapiens chromosome 17, clone CTD-3226O14, complete sequence
          Length = 65233

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   ccactaccaccatcactgcc 138
             ||||||||||||||||||||
Sbjct: 30829 ccactaccaccatcactgcc 30848
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>gb|AC013399.6| Homo sapiens BAC clone RP11-69O6 from 2, complete sequence
          Length = 171812

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 261    caccttctgagcctccggttcctt 284
              ||||||||||||||||| ||||||
Sbjct: 132672 caccttctgagcctccgtttcctt 132649
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>gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, complete sequence
          Length = 174210

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    cccttgctgctgtcccatcc 168
              ||||||||||||||||||||
Sbjct: 171717 cccttgctgctgtcccatcc 171698
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>gb|AC099698.14| Mus musculus chromosome 5, clone RP23-415O9, complete sequence
          Length = 220813

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    tgtagtgttgccaggaggag 377
              ||||||||||||||||||||
Sbjct: 127699 tgtagtgttgccaggaggag 127680
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>gb|AC154480.2| Mus musculus BAC clone RP24-135M1 from 13, complete sequence
          Length = 171846

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   ccactggccaccttgtccca 189
             ||||||||||||||||||||
Sbjct: 67295 ccactggccaccttgtccca 67276
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>gb|U87283.1|RCU87283 Rhodobacter capsulatus LysR-type transcriptional activator CbbRI
           (cbbRI) gene, complete cds
          Length = 1000

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 194 ctgccgccaccgccgccttg 213
           ||||||||||||||||||||
Sbjct: 755 ctgccgccaccgccgccttg 736
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>emb|BX295537.1| Platypus DNA sequence from clone XX-200B24, complete sequence
          Length = 137155

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 138    cggcgtccccgcccttgctgctgtccca 165
              |||||||||| ||| |||||||||||||
Sbjct: 107386 cggcgtcccctcccctgctgctgtccca 107359
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>gb|AC169518.1| Mus musculus chromosome 8, clone RP23-454H8, complete sequence
          Length = 194822

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   cccttgctgctgtcccatcc 168
             ||||||||||||||||||||
Sbjct: 17531 cccttgctgctgtcccatcc 17512
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>emb|AL928560.6| Mouse DNA sequence from clone RP23-353N23 on chromosome 2, complete
              sequence
          Length = 209502

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 445    tccgtccctctttcctgcct 464
              ||||||||||||||||||||
Sbjct: 145318 tccgtccctctttcctgcct 145337


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,821,735
Number of Sequences: 3902068
Number of extensions: 4821735
Number of successful extensions: 101637
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101190
Number of HSP's gapped (non-prelim): 447
length of query: 515
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 492
effective length of database: 17,143,297,704
effective search space: 8434502470368
effective search space used: 8434502470368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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