Clone Name | rbaak4k13 |
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Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 139 bits (70), Expect = 1e-29 Identities = 217/266 (81%) Strand = Plus / Minus Query: 256 gatcactcgatcctctggtggtagacattgaggacatagccgttcaggaggtcgccgaac 315 |||||||| |||||||| ||||| ||||| |||||||||| |||||| ||||| || || Sbjct: 29778976 gatcactcaatcctctgatggtacacattaaggacatagctgttcagaaggtcaccaaat 29778917 Query: 316 gtcttggtcgagaattcccgcaccacgcggtcgcgtgcttgtttgcccatccggaccgct 375 |||||||| ||||| | | |||| || || | | ||||||||| |||||| || ||| Sbjct: 29778916 gtcttggttgagaacttctgcacaacatggccccttgcttgtttacccatcttaactgct 29778857 Query: 376 agatcgtgatcgctcacaaacttcagcatggctttggaaaattcaatcggggagggatcg 435 |||||||||||| |||| | ||||||||||||||| ||||||||| | ||||| || Sbjct: 29778856 agatcgtgatcgttcacgagcttcagcatggcttttgaaaattcaggggcagagggctca 29778797 Query: 436 catagaaaacctgtcgcttcgttcactactgtttccactggaccgccgctgttgcatgcg 495 || ||||| |||||| | || || | ||||||||||||||||| || ||||||||||| Sbjct: 29778796 cagagaaaccctgtctcgtcatttatgactgtttccactggaccaccactgttgcatgca 29778737 Query: 496 attacaggcttgtatgctgccatggc 521 |||||||| || ||||| |||||||| Sbjct: 29778736 attacaggtttatatgcggccatggc 29778711
>dbj|AK100053.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157H01, full insert sequence Length = 1546 Score = 139 bits (70), Expect = 1e-29 Identities = 217/266 (81%) Strand = Plus / Minus Query: 256 gatcactcgatcctctggtggtagacattgaggacatagccgttcaggaggtcgccgaac 315 |||||||| |||||||| ||||| ||||| |||||||||| |||||| ||||| || || Sbjct: 1349 gatcactcaatcctctgatggtacacattaaggacatagctgttcagaaggtcaccaaat 1290 Query: 316 gtcttggtcgagaattcccgcaccacgcggtcgcgtgcttgtttgcccatccggaccgct 375 |||||||| ||||| | | |||| || || | | ||||||||| |||||| || ||| Sbjct: 1289 gtcttggttgagaacttctgcacaacatggccccttgcttgtttacccatcttaactgct 1230 Query: 376 agatcgtgatcgctcacaaacttcagcatggctttggaaaattcaatcggggagggatcg 435 |||||||||||| |||| | ||||||||||||||| ||||||||| | ||||| || Sbjct: 1229 agatcgtgatcgttcacgagcttcagcatggcttttgaaaattcaggggcagagggctca 1170 Query: 436 catagaaaacctgtcgcttcgttcactactgtttccactggaccgccgctgttgcatgcg 495 || ||||| |||||| | || || | ||||||||||||||||| || ||||||||||| Sbjct: 1169 cagagaaaccctgtctcgtcatttatgactgtttccactggaccaccactgttgcatgca 1110 Query: 496 attacaggcttgtatgctgccatggc 521 |||||||| || ||||| |||||||| Sbjct: 1109 attacaggtttatatgcggccatggc 1084
>dbj|AK098964.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071F09, full insert sequence Length = 1541 Score = 139 bits (70), Expect = 1e-29 Identities = 217/266 (81%) Strand = Plus / Minus Query: 256 gatcactcgatcctctggtggtagacattgaggacatagccgttcaggaggtcgccgaac 315 |||||||| |||||||| ||||| ||||| |||||||||| |||||| ||||| || || Sbjct: 1344 gatcactcaatcctctgatggtacacattaaggacatagctgttcagaaggtcaccaaat 1285 Query: 316 gtcttggtcgagaattcccgcaccacgcggtcgcgtgcttgtttgcccatccggaccgct 375 |||||||| ||||| | | |||| || || | | ||||||||| |||||| || ||| Sbjct: 1284 gtcttggttgagaacttctgcacaacatggccccttgcttgtttacccatcttaactgct 1225 Query: 376 agatcgtgatcgctcacaaacttcagcatggctttggaaaattcaatcggggagggatcg 435 |||||||||||| |||| | ||||||||||||||| ||||||||| | ||||| || Sbjct: 1224 agatcgtgatcgttcacgagcttcagcatggcttttgaaaattcaggggcagagggctca 1165 Query: 436 catagaaaacctgtcgcttcgttcactactgtttccactggaccgccgctgttgcatgcg 495 || ||||| |||||| | || || | ||||||||||||||||| || ||||||||||| Sbjct: 1164 cagagaaaccctgtctcgtcatttatgactgtttccactggaccaccactgttgcatgca 1105 Query: 496 attacaggcttgtatgctgccatggc 521 |||||||| || ||||| |||||||| Sbjct: 1104 attacaggtttatatgcggccatggc 1079
>dbj|AK061833.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D04, full insert sequence Length = 1546 Score = 139 bits (70), Expect = 1e-29 Identities = 217/266 (81%) Strand = Plus / Minus Query: 256 gatcactcgatcctctggtggtagacattgaggacatagccgttcaggaggtcgccgaac 315 |||||||| |||||||| ||||| ||||| |||||||||| |||||| ||||| || || Sbjct: 1349 gatcactcaatcctctgatggtacacattaaggacatagctgttcagaaggtcaccaaat 1290 Query: 316 gtcttggtcgagaattcccgcaccacgcggtcgcgtgcttgtttgcccatccggaccgct 375 |||||||| ||||| | | |||| || || | | ||||||||| |||||| || ||| Sbjct: 1289 gtcttggttgagaacttctgcacaacatggccccttgcttgtttacccatcttaactgct 1230 Query: 376 agatcgtgatcgctcacaaacttcagcatggctttggaaaattcaatcggggagggatcg 435 |||||||||||| |||| | ||||||||||||||| ||||||||| | ||||| || Sbjct: 1229 agatcgtgatcgttcacgagcttcagcatggcttttgaaaattcaggggcagagggctca 1170 Query: 436 catagaaaacctgtcgcttcgttcactactgtttccactggaccgccgctgttgcatgcg 495 || ||||| |||||| | || || | ||||||||||||||||| || ||||||||||| Sbjct: 1169 cagagaaaccctgtctcgtcatttatgactgtttccactggaccaccactgttgcatgca 1110 Query: 496 attacaggcttgtatgctgccatggc 521 |||||||| || ||||| |||||||| Sbjct: 1109 attacaggtttatatgcggccatggc 1084
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 139 bits (70), Expect = 1e-29 Identities = 217/266 (81%) Strand = Plus / Minus Query: 256 gatcactcgatcctctggtggtagacattgaggacatagccgttcaggaggtcgccgaac 315 |||||||| |||||||| ||||| ||||| |||||||||| |||||| ||||| || || Sbjct: 59902 gatcactcaatcctctgatggtacacattaaggacatagctgttcagaaggtcaccaaat 59843 Query: 316 gtcttggtcgagaattcccgcaccacgcggtcgcgtgcttgtttgcccatccggaccgct 375 |||||||| ||||| | | |||| || || | | ||||||||| |||||| || ||| Sbjct: 59842 gtcttggttgagaacttctgcacaacatggccccttgcttgtttacccatcttaactgct 59783 Query: 376 agatcgtgatcgctcacaaacttcagcatggctttggaaaattcaatcggggagggatcg 435 |||||||||||| |||| | ||||||||||||||| ||||||||| | ||||| || Sbjct: 59782 agatcgtgatcgttcacgagcttcagcatggcttttgaaaattcaggggcagagggctca 59723 Query: 436 catagaaaacctgtcgcttcgttcactactgtttccactggaccgccgctgttgcatgcg 495 || ||||| |||||| | || || | ||||||||||||||||| || ||||||||||| Sbjct: 59722 cagagaaaccctgtctcgtcatttatgactgtttccactggaccaccactgttgcatgca 59663 Query: 496 attacaggcttgtatgctgccatggc 521 |||||||| || ||||| |||||||| Sbjct: 59662 attacaggtttatatgcggccatggc 59637
>ref|XM_473710.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1257 Score = 135 bits (68), Expect = 2e-28 Identities = 215/264 (81%) Strand = Plus / Minus Query: 258 tcactcgatcctctggtggtagacattgaggacatagccgttcaggaggtcgccgaacgt 317 |||||| |||||||| ||||| ||||| |||||||||| |||||| ||||| || || || Sbjct: 1257 tcactcaatcctctgatggtacacattaaggacatagctgttcagaaggtcaccaaatgt 1198 Query: 318 cttggtcgagaattcccgcaccacgcggtcgcgtgcttgtttgcccatccggaccgctag 377 |||||| ||||| | | |||| || || | | ||||||||| |||||| || ||||| Sbjct: 1197 cttggttgagaacttctgcacaacatggccccttgcttgtttacccatcttaactgctag 1138 Query: 378 atcgtgatcgctcacaaacttcagcatggctttggaaaattcaatcggggagggatcgca 437 |||||||||| |||| | ||||||||||||||| ||||||||| | ||||| || || Sbjct: 1137 atcgtgatcgttcacgagcttcagcatggcttttgaaaattcaggggcagagggctcaca 1078 Query: 438 tagaaaacctgtcgcttcgttcactactgtttccactggaccgccgctgttgcatgcgat 497 ||||| |||||| | || || | ||||||||||||||||| || ||||||||||| || Sbjct: 1077 gagaaaccctgtctcgtcatttatgactgtttccactggaccaccactgttgcatgcaat 1018 Query: 498 tacaggcttgtatgctgccatggc 521 |||||| || ||||| |||||||| Sbjct: 1017 tacaggtttatatgcggccatggc 994
>ref|NM_111959.2| Arabidopsis thaliana arginyltransferase AT3G11240 mRNA, complete cds Length = 2022 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 50 ttatttatccgagagaataata 71 |||||||||||||||||||||| Sbjct: 2008 ttatttatccgagagaataata 1987
>gb|AC073395.6|AC073395 Arabidopsis thaliana chromosome 3 BAC F11B9 genomic sequence, complete sequence Length = 103517 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 50 ttatttatccgagagaataata 71 |||||||||||||||||||||| Sbjct: 55664 ttatttatccgagagaataata 55685
>gb|AC125055.3| Mus musculus BAC clone RP23-397L11 from chromosome 7, complete sequence Length = 209066 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 atcaaagtcagaactcacaag 190 ||||||||||||||||||||| Sbjct: 109690 atcaaagtcagaactcacaag 109710
>gb|AC126428.3| Mus musculus BAC clone RP24-387B13 from chromosome 10, complete sequence Length = 225663 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 179 agaactcacaagtcacaagga 199 ||||||||||||||||||||| Sbjct: 2035 agaactcacaagtcacaagga 2055
>gb|AC018697.4| Homo sapiens BAC clone RP11-577J12 from 18, complete sequence Length = 180562 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 394 aacttcagcatggctttggaaaattcaat 422 |||| |||| ||||||||||||||||||| Sbjct: 18646 aactccagcgtggctttggaaaattcaat 18618
>gb|AC145297.3| Mus musculus BAC clone RP24-196O7 from chromosome 10, complete sequence Length = 172595 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 179 agaactcacaagtcacaagga 199 ||||||||||||||||||||| Sbjct: 162308 agaactcacaagtcacaagga 162328
>gb|U33007.1|SCD9461 Saccharomyces cerevisiae chromosome IV lambda 3641 and cosmids 9461, 9831, and 9410 Length = 78500 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 ttatttatccgagagaataat 70 ||||||||||||||||||||| Sbjct: 53907 ttatttatccgagagaataat 53927
>gb|U23812.1|SCU23812 Saccharomyces cerevisiae RNA polymerase II holoenzyme component (SRB9) gene, complete cds Length = 4849 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 ttatttatccgagagaataat 70 ||||||||||||||||||||| Sbjct: 4410 ttatttatccgagagaataat 4390
>gb|U09176.1|SCU09176 Saccharomyces cerevisiae Sca1p (SCA1) gene, complete cds Length = 4812 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 ttatttatccgagagaataat 70 ||||||||||||||||||||| Sbjct: 4487 ttatttatccgagagaataat 4467
>gb|U42848.1| Caenorhabditis elegans cosmid C31H1, complete sequence Length = 39916 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aataatacagagatcgagaa 84 |||||||||||||||||||| Sbjct: 3683 aataatacagagatcgagaa 3664
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cagacaggccaataatgcaa 120 |||||||||||||||||||| Sbjct: 21958038 cagacaggccaataatgcaa 21958019
>ref|XM_624036.1| PREDICTED: Apis mellifera similar to ENSANGP00000028388 (LOC551645), partial mRNA Length = 1908 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 gaactgatcccgactgttca 31 |||||||||||||||||||| Sbjct: 462 gaactgatcccgactgttca 443
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 actcacaagtcacaaggata 201 |||||||||||||||||||| Sbjct: 27716509 actcacaagtcacaaggata 27716528
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cagacaggccaataatgcaa 120 |||||||||||||||||||| Sbjct: 21951067 cagacaggccaataatgcaa 21951048
>gb|AC093833.2| Homo sapiens BAC clone RP11-405K23 from 2, complete sequence Length = 112968 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 cttatttatccgagagaata 68 |||||||||||||||||||| Sbjct: 67079 cttatttatccgagagaata 67098
>gb|AC120537.6| Oryza sativa chromosome 3 BAC OSJNBb0042N11 genomic sequence, complete sequence Length = 127210 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cagacaggccaataatgcaa 120 |||||||||||||||||||| Sbjct: 50978 cagacaggccaataatgcaa 50997
>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496C02 Length = 148419 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 actcacaagtcacaaggata 201 |||||||||||||||||||| Sbjct: 8888 actcacaagtcacaaggata 8907
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 actcacaagtcacaaggata 201 |||||||||||||||||||| Sbjct: 95611 actcacaagtcacaaggata 95630
>dbj|AB120420.1| Helicobacter pylori genes for cag pathogenicity island protein, complete cds, strain:F79 Length = 37459 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 gctgttgcatgcgattacag 502 |||||||||||||||||||| Sbjct: 18961 gctgttgcatgcgattacag 18942
>dbj|AB120416.1| Helicobacter pylori genes for cag pathogenicity island protein, complete cds, strain:F16 Length = 37029 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 gctgttgcatgcgattacag 502 |||||||||||||||||||| Sbjct: 18882 gctgttgcatgcgattacag 18863
>emb|CT010472.8| Mouse DNA sequence from clone RP23-37H11 on chromosome 13, complete sequence Length = 182622 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gctcacaaacttcagcatgg 406 |||||||||||||||||||| Sbjct: 99133 gctcacaaacttcagcatgg 99152 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,614,518 Number of Sequences: 3902068 Number of extensions: 3614518 Number of successful extensions: 63023 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62887 Number of HSP's gapped (non-prelim): 136 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)