ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4k07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYL_BLOFL (Q7VRA6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 29 2.9
2SYL_PARUW (Q6MCC8) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 4.9
3SYL_MANSM (Q65VR5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 8.3
4SYL_SHEON (Q8EHP4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 8.3

>SYL_BLOFL (Q7VRA6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 867

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 16  FYKVWHGTCSDAGQVRT*RPSIRLRLHGMIVVDRY 120
           +++ +H    D G +++  P+IRL   GMI+ D +
Sbjct: 546 YFRFYHKLMRDIGLIQSNEPAIRLLCQGMILADSF 580



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>SYL_PARUW (Q6MCC8) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 845

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 16  FYKVWHGTCSDAGQVRT*RPSIRLRLHGMIVVDRYDTMM 132
           + + WH    D G V T  P   LR  G++V   Y   M
Sbjct: 554 YARFWHKVLYDCGYVHTLEPFQTLRNQGLVVARSYQNKM 592



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>SYL_MANSM (Q65VR5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 860

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 16  FYKVWHGTCSDAGQVRT*RPSIRLRLHGMIVVDRY 120
           +++ +H    DAG V T  P+ +L   GM++ D +
Sbjct: 540 YFRFFHKLLRDAGLVSTDEPTKKLLCQGMVLADAF 574



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>SYL_SHEON (Q8EHP4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 859

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 16  FYKVWHGTCSDAGQVRT*RPSIRLRLHGMIVVDRY 120
           +++ +H    DAG V T  P+ +L   GM++ D +
Sbjct: 538 YFRFFHKLLRDAGLVNTNEPAKQLLTQGMVLADAF 572


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,844,862
Number of Sequences: 219361
Number of extensions: 397315
Number of successful extensions: 762
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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