ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4k03 |
|---|---|
| Clone Library Name | barley_pub |
>CHST2_HUMAN (Q9Y4C5) Carbohydrate sulfotransferase 2 (EC 2.8.2.-)| (N-acetylglucosamine 6-O-sulfotransferase 1) (GlcNAc6ST-1) (Gn6ST) (Galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 2) (GST-2) Length = 530 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%) Frame = -1 Query: 376 ASGPQRLXMHWSERASRTWPASP---RVFR 296 A+ P+ L W R R WPASP +VFR Sbjct: 23 AAAPRALLPQWPRRPGRRWPASPLGMKVFR 52
>RS12_SYNP7 (P63200) 30S ribosomal protein S12| Length = 124 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -2 Query: 372 QVHSXCXCIGARGLPEPGL-HHLGSSDIETXNVRDRRRSRAAECGESRP 229 Q HS G R PG+ +H+ ++T V+DRR+SR ++ G RP Sbjct: 75 QEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQSR-SKYGAKRP 122
>RS12_SYNP6 (P63199) 30S ribosomal protein S12| Length = 124 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -2 Query: 372 QVHSXCXCIGARGLPEPGL-HHLGSSDIETXNVRDRRRSRAAECGESRP 229 Q HS G R PG+ +H+ ++T V+DRR+SR ++ G RP Sbjct: 75 QEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQSR-SKYGAKRP 122
>Y2921_MYCBO (P68908) Hypothetical protein Mb2921c| Length = 503 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -2 Query: 324 PGLHHLGSSDIETXNVRDRRRSRAAECGESRP 229 PG+H +G D RDR R+ CG S P Sbjct: 30 PGVHLVGLPDAALQESRDRVRAAVTNCGNSWP 61
>Y2897_MYCTU (P68909) Hypothetical protein Rv2897c/MT2965| Length = 503 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -2 Query: 324 PGLHHLGSSDIETXNVRDRRRSRAAECGESRP 229 PG+H +G D RDR R+ CG S P Sbjct: 30 PGVHLVGLPDAALQESRDRVRAAVTNCGNSWP 61
>RS12_PROMT (Q46IW1) 30S ribosomal protein S12| Length = 124 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -2 Query: 372 QVHSXCXCIGARGLPEPGL-HHLGSSDIETXNVRDRRRSRA 253 Q HS G R PG+ +H+ ++T V+DRR+SR+ Sbjct: 75 QEHSVVLLRGGRVKDLPGVRYHIVRGSLDTAGVKDRRQSRS 115
>YNVD_SCHPO (O74388) Protein C3H7.13 in chromosome II| Length = 301 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +2 Query: 56 SEXYELKRVTRRAAILITI*CQPTRRSAQPGPGTLL*XSXKLSRQSQELW 205 +E ++ K++ + + I + T +S P P L S LSRQ ELW Sbjct: 11 NESFQTKKLVISPSTIYKI-GRHTNKSTSPSPSNLFFNSKVLSRQHAELW 59
>RS12_SYNEL (P59168) 30S ribosomal protein S12| Length = 134 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = -2 Query: 372 QVHSXCXCIGARGLPEPGL-HHLGSSDIETXNVRDRRRSRAAECGESRPCDHPGE 211 Q HS G R PG+ +H+ ++T V+DR++ R ++ G RP PGE Sbjct: 75 QEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRKQGR-SKYGAKRP--KPGE 126
>RS12_SYNPX (Q7U4D4) 30S ribosomal protein S12| Length = 124 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -2 Query: 372 QVHSXCXCIGARGLPEPGL-HHLGSSDIETXNVRDRRRSRA 253 Q HS G R PG+ +H+ ++T V+DRR+SR+ Sbjct: 75 QEHSVVLIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQSRS 115
>ATG23_YEAST (Q06671) Autophagy-related protein 23 (Cytoplasm to vacuole| targeting protein 23) Length = 453 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/72 (22%), Positives = 35/72 (48%) Frame = +3 Query: 18 IPPSTPTDTLNLTVXNMNSRE*LEEQRF*SQFDASQLEDLLSLVREHCYEXXQSYQDSPK 197 IPP+ ++ +N T+ +N+ +++ + +++ D+LS E + + QD Sbjct: 335 IPPNEMSEMINSTIQYLNNLLDSSDEKLTTTLISNE-RDVLSKACEELHSESTTAQDGSS 393 Query: 198 NYGDXPLDGHKA 233 P+D HK+ Sbjct: 394 ALPSKPIDIHKS 405
>RS12_DESVH (Q72CI5) 30S ribosomal protein S12| Length = 123 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -2 Query: 372 QVHSXCXCIGARGLPEPGL-HHLGSSDIETXNVRDRRRSRAAECGESRP 229 Q HS G R PG+ +H+ ++T V+DRR+ R ++ G RP Sbjct: 75 QEHSVVMIRGGRVKDLPGVRYHIVRGTLDTSGVQDRRQGR-SKYGAKRP 122
>RS12_DESDG (Q30Z36) 30S ribosomal protein S12| Length = 123 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -2 Query: 372 QVHSXCXCIGARGLPEPGL-HHLGSSDIETXNVRDRRRSRAAECGESRP 229 Q HS G R PG+ +H+ ++T V+DRR+ R ++ G RP Sbjct: 75 QEHSVVMIRGGRVKDLPGVRYHIVRGTLDTAGVQDRRQGR-SKYGAKRP 122
>RS12_PROMP (Q7UZY4) 30S ribosomal protein S12| Length = 125 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -2 Query: 372 QVHSXCXCIGARGLPEPGL-HHLGSSDIETXNVRDRRRSRA 253 Q HS G R PG+ +H+ ++T V+DRR+SR+ Sbjct: 75 QEHSVVLLRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQSRS 115
>RS12_SPIPL (P13576) 30S ribosomal protein S12| Length = 124 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = -2 Query: 372 QVHSXCXCIGARGLPEPGL-HHLGSSDIETXNVRDRRRSRAAECGESRP 229 Q HS G R PG+ +H+ ++T V+DRR R ++ G RP Sbjct: 75 QEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRNGR-SKYGAKRP 122
>RR12_CYAPA (P17294) Cyanelle 30S ribosomal protein S12| Length = 124 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -2 Query: 372 QVHSXCXCIGARGLPEPGL-HHLGSSDIETXNVRDRRRSRAAECGESRP 229 Q HS G R PG+ +H+ ++ V+DRR+SR ++ G RP Sbjct: 75 QEHSVVLVRGGRVKDLPGVRYHIVRGALDAAGVKDRRQSR-SKYGAKRP 122
>GPPA_VIBF1 (Q5E8U7) Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase| (EC 3.6.1.40) (Guanosine pentaphosphate phosphohydrolase) (pppGpp-5'-phosphohydrolase) Length = 497 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = -2 Query: 318 LHHLGSSDIETXNVRDRRRSRAAECGESRPCDHPGEXLHSSWDCLDNFXEXHNSVP 151 + H+ S ++T R+ AA E+ H E + WDCL F E +P Sbjct: 25 VRHINGS-VQTMAKIKRKVRLAAGLNENNTLSH--EAMQRGWDCLSLFAERLQDIP 77
>CHST2_MOUSE (Q80WV3) Carbohydrate sulfotransferase 2 (EC 2.8.2.-)| (N-acetylglucosamine 6-O-sulfotransferase 1) (GlcNAc6ST-1) (Gn6st-1) (Galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 2) (GST-2) Length = 530 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 3/20 (15%) Frame = -1 Query: 346 WSERASRTWPASP---RVFR 296 W RA R WPASP +VFR Sbjct: 33 WPRRAGRRWPASPLGMKVFR 52
>RS12_ENTFA (Q839H1) 30S ribosomal protein S12| Length = 137 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -2 Query: 372 QVHSXCXCIGARGLPEPGL-HHLGSSDIETXNVRDRRRSRAAECGESRP 229 Q HS G R PG+ +H+ ++T V DR++SR ++ G RP Sbjct: 88 QEHSVVLLRGGRVKDLPGVRYHIVRGALDTAGVNDRKQSR-SKYGTKRP 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,848,750 Number of Sequences: 219361 Number of extensions: 777799 Number of successful extensions: 1936 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1905 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1933 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
