ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4j21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y12595.1|OSGOG2 O.sativa mRNA for Fd-GOGAT, partial, clone O... 78 2e-11
2emb|Y12594.1|OSGOG1 O.sativa mRNA for Fd-GOGAT, partial, clone O... 78 2e-11
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
4dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
5dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
6dbj|AK068130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
7gb|AY109539.1| Zea mays CL2484_1 mRNA sequence 68 2e-08
8gb|M59190.1|MZEFEGLU Zea mays ferredoxin-dependent glutamate syn... 68 2e-08
9gb|DQ127702.1| Emiliania huxleyi virus 163 clone mike215.seq par... 44 0.33
10emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 44 0.33
11emb|AL929226.7| Mouse DNA sequence from clone RP23-368N20 on chr... 44 0.33
12gb|AY819158.1| Hyla palmeri proopiomelanocortin A (POMC) gene, p... 40 5.2
13emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 ... 40 5.2
14gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 5.2
15gb|AC068954.5| Homo sapiens chromosome 8, clone RP11-45A11, comp... 40 5.2
16emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 ... 40 5.2 
>emb|Y12595.1|OSGOG2 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog2
          Length = 4120

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 65/73 (89%), Gaps = 3/73 (4%)
 Strand = Plus / Minus

                                                                        
Query: 2    cacatgccactcgcatgcctantccacaggacgggtataaatataagaactaatgtgtcc 61
            ||||||| |||||||||||    |||| |||||||||||||| |||||||||||||||||
Sbjct: 3935 cacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtcc 3879

                         
Query: 62   agaacaaaaaata 74
            ||||| |||||||
Sbjct: 3878 agaaccaaaaata 3866



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 235  aagatgccttggacagagcttccacaaaattgcagcctttgg 276
            |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 3687 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3646



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 142  cctagcgtcagcgaaccaatttacagggg 170
            |||||||||||| ||||||||||||||||
Sbjct: 3790 cctagcgtcagcaaaccaatttacagggg 3762
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>emb|Y12594.1|OSGOG1 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog1
          Length = 2851

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 65/73 (89%), Gaps = 3/73 (4%)
 Strand = Plus / Minus

                                                                        
Query: 2    cacatgccactcgcatgcctantccacaggacgggtataaatataagaactaatgtgtcc 61
            ||||||| |||||||||||    |||| |||||||||||||| |||||||||||||||||
Sbjct: 2666 cacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtcc 2610

                         
Query: 62   agaacaaaaaata 74
            ||||| |||||||
Sbjct: 2609 agaaccaaaaata 2597



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 235  aagatgccttggacagagcttccacaaaattgcagcctttgg 276
            |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 2418 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 2377



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 142  cctagcgtcagcgaaccaatttacagggg 170
            |||||||||||| ||||||||||||||||
Sbjct: 2521 cctagcgtcagcaaaccaatttacagggg 2493
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 65/73 (89%), Gaps = 3/73 (4%)
 Strand = Plus / Plus

                                                                            
Query: 2        cacatgccactcgcatgcctantccacaggacgggtataaatataagaactaatgtgtcc 61
                ||||||| |||||||||||    |||| |||||||||||||| |||||||||||||||||
Sbjct: 27669554 cacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtcc 27669610

                             
Query: 62       agaacaaaaaata 74
                ||||| |||||||
Sbjct: 27669611 agaaccaaaaata 27669623



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 235      aagatgccttggacagagcttccacaaaattgcagcctttgg 276
                |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 27669804 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 27669845



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 142      cctagcgtcagcgaaccaatttacagggg 170
                |||||||||||| ||||||||||||||||
Sbjct: 27669701 cctagcgtcagcaaaccaatttacagggg 27669729
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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0047B07
          Length = 157797

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 65/73 (89%), Gaps = 3/73 (4%)
 Strand = Plus / Plus

                                                                          
Query: 2      cacatgccactcgcatgcctantccacaggacgggtataaatataagaactaatgtgtcc 61
              ||||||| |||||||||||    |||| |||||||||||||| |||||||||||||||||
Sbjct: 126547 cacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtcc 126603

                           
Query: 62     agaacaaaaaata 74
              ||||| |||||||
Sbjct: 126604 agaaccaaaaata 126616



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                        
Query: 235    aagatgccttggacagagcttccacaaaattgcagcctttgg 276
              |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 126797 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 126838



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 142    cctagcgtcagcgaaccaatttacagggg 170
              |||||||||||| ||||||||||||||||
Sbjct: 126694 cctagcgtcagcaaaccaatttacagggg 126722
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>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1477_F01
          Length = 158792

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 65/73 (89%), Gaps = 3/73 (4%)
 Strand = Plus / Plus

                                                                         
Query: 2     cacatgccactcgcatgcctantccacaggacgggtataaatataagaactaatgtgtcc 61
             ||||||| |||||||||||    |||| |||||||||||||| |||||||||||||||||
Sbjct: 48656 cacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtcc 48712

                          
Query: 62    agaacaaaaaata 74
             ||||| |||||||
Sbjct: 48713 agaaccaaaaata 48725



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 235   aagatgccttggacagagcttccacaaaattgcagcctttgg 276
             |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 48906 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 48947



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 142   cctagcgtcagcgaaccaatttacagggg 170
             |||||||||||| ||||||||||||||||
Sbjct: 48803 cctagcgtcagcaaaccaatttacagggg 48831
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>dbj|AK068130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132D11, full
            insert sequence
          Length = 3596

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 65/73 (89%), Gaps = 3/73 (4%)
 Strand = Plus / Minus

                                                                        
Query: 2    cacatgccactcgcatgcctantccacaggacgggtataaatataagaactaatgtgtcc 61
            ||||||| |||||||||||    |||| |||||||||||||| |||||||||||||||||
Sbjct: 3552 cacatgcgactcgcatgccc---ccactggacgggtataaatgtaagaactaatgtgtcc 3496

                         
Query: 62   agaacaaaaaata 74
            ||||| |||||||
Sbjct: 3495 agaaccaaaaata 3483



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 235  aagatgccttggacagagcttccacaaaattgcagcctttgg 276
            |||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 3302 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3261



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 142  cctagcgtcagcgaaccaatttacagggg 170
            |||||||||||| ||||||||||||||||
Sbjct: 3405 cctagcgtcagcaaaccaatttacagggg 3377
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>gb|AY109539.1| Zea mays CL2484_1 mRNA sequence
          Length = 5572

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 134  ccttgcagcctagcgtcagcgaaccaatttacaggggt 171
            |||||||||||||||||||| |||||||||||||||||
Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394
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>gb|M59190.1|MZEFEGLU Zea mays ferredoxin-dependent glutamate synthase mRNA, complete cds
          Length = 5617

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 134  ccttgcagcctagcgtcagcgaaccaatttacaggggt 171
            |||||||||||||||||||| |||||||||||||||||
Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394
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>gb|DQ127702.1| Emiliania huxleyi virus 163 clone mike215.seq partial sequence
          Length = 645

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 61  cagaacaaaaaatataattaca 82
           ||||||||||||||||||||||
Sbjct: 245 cagaacaaaaaatataattaca 224
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>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86
          Length = 407339

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 61     cagaacaaaaaatataattaca 82
              ||||||||||||||||||||||
Sbjct: 268710 cagaacaaaaaatataattaca 268689
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>emb|AL929226.7| Mouse DNA sequence from clone RP23-368N20 on chromosome X, complete
            sequence
          Length = 79248

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 33   cgggtataaatataagaactaa 54
            ||||||||||||||||||||||
Sbjct: 7441 cgggtataaatataagaactaa 7420
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>gb|AY819158.1| Hyla palmeri proopiomelanocortin A (POMC) gene, partial cds
          Length = 523

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 233 agaagatgccttggacagag 252
           ||||||||||||||||||||
Sbjct: 229 agaagatgccttggacagag 248
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>emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 in linkage group 21,
              complete sequence
          Length = 164899

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     tccagaacaaaaaatataat 78
              ||||||||||||||||||||
Sbjct: 127681 tccagaacaaaaaatataat 127700
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 63      gaacaaaaaatataattaca 82
               ||||||||||||||||||||
Sbjct: 3061037 gaacaaaaaatataattaca 3061056
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>gb|AC068954.5| Homo sapiens chromosome 8, clone RP11-45A11, complete sequence
          Length = 163541

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    aaaattgcagcctttggtga 279
              ||||||||||||||||||||
Sbjct: 106966 aaaattgcagcctttggtga 106985
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>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3,
             complete sequence
          Length = 117153

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 355   ttagctttgatcattttggcgatt 378
             ||||||||||||||||| ||||||
Sbjct: 27297 ttagctttgatcattttcgcgatt 27274


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,674,030
Number of Sequences: 3902068
Number of extensions: 3674030
Number of successful extensions: 65057
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64975
Number of HSP's gapped (non-prelim): 76
length of query: 388
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 366
effective length of database: 17,147,199,772
effective search space: 6275875116552
effective search space used: 6275875116552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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