ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4j20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ALG1_YEAST (P16661) Chitobiosyldiphosphodolichol beta-mannosyltr... 31 2.6
2TINAG_HUMAN (Q9UJW2) Tubulointerstitial nephritis antigen (TIN-Ag) 30 5.7
3MATK_CYCPA (Q9MV47) Maturase K (Intron maturase) 29 7.5
4HIS8_THETN (Q8R5Q4) Histidinol-phosphate aminotransferase (EC 2.... 29 9.7

>ALG1_YEAST (P16661) Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC|
           2.4.1.142) (GDP-mannose-dolichol diphosphochitobiose
           mannosyltransferase) (GDP-Man:GlcNAc2-PP-dolichol
           mannosyltransferase) (Beta-1,4-mannosyltransferase)
           (Asparagine-linked gl
          Length = 449

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 43  TGMDVLLAFVSFSGSLLPRRMVYCFLHPLYLEST*LLSIFS-YEIYGLSIHAAFSCFLLS 219
           TG  +++ + + + S+L  +    F HPL L S  +  IFS +  Y L++  A   +L+ 
Sbjct: 153 TGCKLIIDWHNLAYSILQLKFKGNFYHPLVLISYMVEMIFSKFADYNLTVTEAMRKYLIQ 212

Query: 220 QTNLVPKR 243
             +L PKR
Sbjct: 213 SFHLNPKR 220



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>TINAG_HUMAN (Q9UJW2) Tubulointerstitial nephritis antigen (TIN-Ag)|
          Length = 476

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 423 SLVASKLRLPYFGRGTANLSPPRLVQQLPSQRPACSSSN 539
           S+ A ++ +   GR TANLSP  L+      R  C+S +
Sbjct: 250 SVAADRIAIQSKGRYTANLSPQNLISCCAKNRHGCNSGS 288



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>MATK_CYCPA (Q9MV47) Maturase K (Intron maturase)|
          Length = 519

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -3

Query: 487 GGERFAVPRPK*G---SLSFDATREKRARLFHTQWFKRAKYC 371
           G E F    PK     SLSF  TR +R R++H+   +R  +C
Sbjct: 461 GSELFTKSSPKERELISLSFSKTRSQRERIWHSDILQRNPFC 502



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>HIS8_THETN (Q8R5Q4) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 351

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 204 LFSVVSDEPGAQEAVINVNEDNAVNVE 284
           ++S+ S   GA E  +N+NED   NVE
Sbjct: 112 MYSIYSKIAGANEIAVNLNEDYTYNVE 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,610,461
Number of Sequences: 219361
Number of extensions: 1343159
Number of successful extensions: 2798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2798
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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