Clone Name | rbaak4j19 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete ... | 137 | 2e-29 | 2 | gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 ge... | 48 | 0.011 |
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>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence Length = 102433 Score = 137 bits (69), Expect = 2e-29 Identities = 110/126 (87%), Gaps = 2/126 (1%) Strand = Plus / Minus Query: 5 tgttggcgttatccagagtggaatacgtatatat--cagaatgtgggttacatatgatgg 62 |||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||| Sbjct: 81036 tgttggcgttatacagagtggaatacgtatatatatcagaatgtgcgttacatatggtgg 80977 Query: 63 atcccaacgaaatggtgtctgnctaaccgaggaggnnnnnnnnnaccaggcaaggaaaca 122 |||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct: 80976 atcccaacgaaatggtgtctacctaaccgaggaggagagagatcaccaggcaaggaaaca 80917 Query: 123 ctattg 128 |||||| Sbjct: 80916 ctattg 80911
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 5 tgttggcgttatccagagtggaatacgt 32 ||||||||||||| |||||||||||||| Sbjct: 193728 tgttggcgttatcgagagtggaatacgt 193701 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 708,285 Number of Sequences: 3902068 Number of extensions: 708285 Number of successful extensions: 42049 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42045 Number of HSP's gapped (non-prelim): 3 length of query: 209 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 187 effective length of database: 17,147,199,772 effective search space: 3206526357364 effective search space used: 3206526357364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)