>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor|
          Length = 287

 Score =  129 bits (323), Expect = 7e-30
 Identities = 67/97 (69%), Positives = 73/97 (75%)
 Frame = -2

Query: 559 FSYSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQAXXX 380
           FSYSRFFAVGLFRLLEL+NATEPT+LDKLCAALNINK+SVDRDLDVYRN+LSKLVQA   
Sbjct: 191 FSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKEL 250

Query: 379 XXXXXXXXXXXXXXXXETPKPNEAVAKFDGSTYPLKH 269
                           ETPK NEAV KFDGS   ++H
Sbjct: 251 LKEYVEREKKKREERSETPKSNEAVTKFDGSLNSMRH 287

>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor|
          Length = 300

 Score =  111 bits (277), Expect = 2e-24
 Identities = 59/92 (64%), Positives = 67/92 (72%)
 Frame = -2

Query: 559 FSYSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQAXXX 380
           FSYSRFFAVGLFRLLEL++AT+PTVLDKLCA+LNINKKSVDRDLDVYRNLLSKLVQA   
Sbjct: 197 FSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKEL 256

Query: 379 XXXXXXXXXXXXXXXXETPKPNEAVAKFDGST 284
                           ++ K NE ++K  G T
Sbjct: 257 LKEYVEREKKKQGERAQSQKANETISKCLGDT 288

>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor|
          Length = 293

 Score =  102 bits (254), Expect = 7e-22
 Identities = 49/57 (85%), Positives = 54/57 (94%)
 Frame = -2

Query: 559 FSYSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 389
           F YSR FAVGLFRLLEL+N T+PT+L+KLCAALN+NKKSVDRDLDVYRNLLSKLVQA
Sbjct: 198 FCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQA 254

>THF1_ANAVT (Q3M4B2) Protein thf1|
          Length = 233

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
 Frame = -2

Query: 559 FSYSRFFAVGLFRLLELSN-------ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSK 401
           F YSR FA+GLF LLE SN             L  + A L+++   + +DL++YR+ L K
Sbjct: 139 FKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLSDDKLSKDLELYRSNLDK 198

Query: 400 LVQA 389
           + QA
Sbjct: 199 MTQA 202

>THF1_ANASP (Q8YZ41) Protein thf1|
          Length = 233

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
 Frame = -2

Query: 559 FSYSRFFAVGLFRLLELSN-------ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSK 401
           F YSR FA+GLF LLE SN             L  + A L+++     +DL++YR+ L K
Sbjct: 139 FKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLSDDKFSKDLELYRSNLDK 198

Query: 400 LVQA 389
           + QA
Sbjct: 199 MTQA 202

>THF1_SYNP7 (Q31MY4) Protein thf1|
          Length = 254

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
 Frame = -2

Query: 559 FSYSRFFAVGLFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNLLSK 401
           F YSR FA+GLF LLE +      +P  L     A+    ++    + +DLD+YR+ L K
Sbjct: 140 FKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSNLEK 199

Query: 400 LVQA 389
           + QA
Sbjct: 200 MEQA 203

>THF1_SYNP6 (Q5N664) Protein thf1|
          Length = 254

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
 Frame = -2

Query: 559 FSYSRFFAVGLFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNLLSK 401
           F YSR FA+GLF LLE +      +P  L     A+    ++    + +DLD+YR+ L K
Sbjct: 140 FKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSNLEK 199

Query: 400 LVQA 389
           + QA
Sbjct: 200 MEQA 203

>THF1_PROMM (Q7V7R3) Protein thf1|
          Length = 243

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
 Frame = -2

Query: 559 FSYSRFFAVGLFRLLELSNATEPT-------VLDKLCAALNINKKSVDRDLDVYRNLLSK 401
           F YSR  AVGL  LL  +   E +       +  +L  ++  +K  V++DL++Y++ L K
Sbjct: 138 FHYSRLMAVGLLSLLASAQGDESSDPEKLSQIAHELSESVGFSKARVEKDLNLYKSNLEK 197

Query: 400 LVQA 389
           + QA
Sbjct: 198 MAQA 201

>THF1_SYNY3 (P73956) Protein thf1|
          Length = 240

 Score = 37.4 bits (85), Expect = 0.029
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
 Frame = -2

Query: 559 FSYSRFFAVGLFRLL-----ELSNATE--PTVLDKLCAALNINKKSVDRDLDVYRNLLSK 401
           F YSR FA+GL+ LL     E+ +  E     L +L   L+++   V +DLD+YR+ L K
Sbjct: 138 FKYSRLFAIGLYTLLADQDPEVKDNDEKRQDYLTRLSELLDLSLDKVVKDLDLYRSNLEK 197

Query: 400 LVQ 392
           + Q
Sbjct: 198 VDQ 200

>THF1_SYNEL (Q8DJT8) Protein thf1|
          Length = 222

 Score = 36.6 bits (83), Expect = 0.050
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
 Frame = -2

Query: 553 YSRFFAVGLFRLLELSNATEPTV-----LDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 389
           YSR  AVGL+  L+   A E T+     LD+L   + +  + V RDL++YR+ L K+ QA
Sbjct: 131 YSRLHAVGLYAFLQ-ELAGEVTIHLNETLDQLAPVIPLPIEKVKRDLELYRSNLDKINQA 189

>THF1_GLOVI (Q7NKS7) Protein thf1|
          Length = 228

 Score = 36.2 bits (82), Expect = 0.065
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
 Frame = -2

Query: 559 FSYSRFFAVGLFRLLE-------LSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSK 401
           F YSR F++GL  +LE       +S       L ++C  L ++   V RDLD + ++L +
Sbjct: 141 FKYSRLFSLGLANILEQAGRAAAMSEKDRLERLQQICTYLKLDYNRVKRDLDFFHSVLER 200

Query: 400 L 398
           +
Sbjct: 201 I 201

>THF1_PROMA (Q7VC23) Protein thf1|
          Length = 214

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = -2

Query: 553 YSRFFAVGLFRLLELSN-----ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKL 398
           YSR  A+G++ L+   N       +  ++ +   AL  +K  V++D++ Y+N + K+
Sbjct: 137 YSRLHAIGIYELISNINEDKKEGDDKEIISECVEALGFSKDRVEKDINQYKNSMEKI 193

>THF1_SYNJB (P0C1D1) Protein thf1|
          Length = 239

 Score = 32.3 bits (72), Expect = 0.94
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
 Frame = -2

Query: 559 FSYSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKSVDRDLDVYRNLLS 404
           ++YSR  AVGL+   E+   S   EP       L+ + + L  + + V +DL++YR+ L 
Sbjct: 138 YAYSRVLAVGLYTAYEVVAKSLYEEPEERTRRFLENVVSKLPFSTERVRKDLELYRSSLD 197

Query: 403 KLVQA 389
           ++ QA
Sbjct: 198 RMKQA 202

>THF1_SYNJA (Q2JSQ3) Protein thf1|
          Length = 239

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
 Frame = -2

Query: 559 FSYSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKSVDRDLDVYRNLLS 404
           ++YSR  AVGL+   E    S   EP       L+ +   L  + + V +DL++YR+ L 
Sbjct: 138 YAYSRVLAVGLYTAYEAVATSLYKEPEERTRHFLEDVIGNLPFSPERVKKDLELYRSNLD 197

Query: 403 KLVQA 389
           +L QA
Sbjct: 198 RLKQA 202

>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 229 QILTVIH-LDSVENYRGHLWLLFAWCSTR 146
           ++L V H + SV+ YRG LW+L  +CST+
Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469

>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 229 QILTVIH-LDSVENYRGHLWLLFAWCSTR 146
           ++L V H + SV+ YRG LW+L  +CST+
Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469

>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 229 QILTVIH-LDSVENYRGHLWLLFAWCSTR 146
           ++L V H + SV+ YRG LW+L  +CST+
Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469

>GFAP_HUMAN (P14136) Glial fibrillary acidic protein, astrocyte (GFAP)|
          Length = 432

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = -1

Query: 500 DGANRTGQALRCSKHQ*K--KRG*RP*RLPQLTVEIGSSQGTS*GIRREGKEEESREIGD 327
           D A R  + LR +KH+    +R     +L  LT ++ S +GT+  + R+ +E+E R + +
Sbjct: 266 DAAARNAELLRQAKHEANDYRR-----QLQSLTCDLESLRGTNESLERQMREQEERHVRE 320

Query: 326 A 324
           A
Sbjct: 321 A 321

>THF1_SYNS9 (Q3AY05) Protein thf1|
          Length = 215

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
 Frame = -2

Query: 553 YSRFFAVGLFRLLE--LSNATEPTVLD------KLCAALNINKKSVDRDLDVY 419
           YSR  A+G+ RL E    +A +P   D      +L  ALN   + V++DL ++
Sbjct: 125 YSRLMAIGVLRLFEEAKGDADQPDEADLRKRCKELSTALNFPAERVEKDLSLF 177

>Y2658_LISIN (Q927X9) Hypothetical UPF0230 protein lin2658|
          Length = 283

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 25  IXTDNSSYIVNEVKKTVHSNTEKEK--LQNTNYCE*SGSFCTAEYYTTQRAAKDAPDSSQ 198
           + TD+++Y+ +EVK+ +  N       +   +Y E      TA++Y   + A++ P SSQ
Sbjct: 7   VVTDSTTYLPDEVKEQLRINVVPLSVIIDGKSYRE-GEELSTADFYKKVKEAENFPTSSQ 65

Query: 199 RYP 207
             P
Sbjct: 66  PAP 68

>THF1_SYNPX (Q7U6N6) Protein thf1|
          Length = 212

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = -2

Query: 553 YSRFFAVGLFRLLEL-SNATEPTVLD----KLCAALNINKKSVDRDLDVYRNLLSKLVQA 389
           YSR  AVGL  LLE  S+ ++ + L     KL   L +  + V++DL V+ +   ++ QA
Sbjct: 125 YSRLMAVGLLALLEASSDESDASSLRQRAVKLSVDLGLPAERVEKDLTVFSSNSERMEQA 184


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,504,213
Number of Sequences: 219361
Number of extensions: 1334694
Number of successful extensions: 3898
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3888
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)