Clone Name | rbaak4j09 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009447.1| Triticum aestivum clone wlmk8.pk0015.h6:fis, full insert mRNA sequence Length = 1206 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Minus Query: 416 cgccgccgtcatacagttattcctagttggacgcaagaccacctgcgcctgtcttattgc 475 |||| |||||||||| ||| |||||||||||| || | ||||||||||||||||||||| Sbjct: 953 cgccaccgtcatacaattaatcctagttggactcagaatcacctgcgcctgtcttattgc 894 Query: 476 gacaaacatccgcgagtttccgcggcagactgactaacagtagaccagtgata 528 ||||||||||||| |||||||||||| ||||||||| | |||||| |||||| Sbjct: 893 gacaaacatccgcaagtttccgcggcggactgactaccgatagaccggtgata 841 Score = 109 bits (55), Expect = 1e-20 Identities = 116/134 (86%), Gaps = 3/134 (2%) Strand = Plus / Minus Query: 251 gtcagaactgcctcaggagttcgattcatgtcgaggtccgaatacaaacgcagtttctgc 310 ||||||| |||||| |||| |||||||||||| ||| |||||||||| |||||| ||| Sbjct: 1131 gtcagaatggcctcacaagttggattcatgtcgacgtctgaatacaaacacagtttttgc 1072 Query: 311 ttagtttaaccagcacatgg-ctctggttttctgaccttg--gttacccagccgctgctg 367 || ||||||| || |||||| | ||||||||| ||||||| ||||||||||||||||| Sbjct: 1071 ttggtttaactagtacatggcccctggttttccgaccttgttattacccagccgctgctg 1012 Query: 368 gctcagcaatgtga 381 |||||||||||||| Sbjct: 1011 gctcagcaatgtga 998
>gb|AC132889.10| Mus musculus chromosome 5, clone RP24-267K12, complete sequence Length = 168641 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 aaggaagaaaccacatcaag 113 |||||||||||||||||||| Sbjct: 69234 aaggaagaaaccacatcaag 69253
>gb|AY752713.1| Brassica oleracea var. gemmifera isolate ML13_33 tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast Length = 793 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 tcaattggtagagcagaaga 61 |||||||||||||||||||| Sbjct: 750 tcaattggtagagcagaaga 769
>gb|AC162689.3| Mus musculus chromosome 5, clone RP23-396K22, complete sequence Length = 168260 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 aaggaagaaaccacatcaag 113 |||||||||||||||||||| Sbjct: 133075 aaggaagaaaccacatcaag 133094
>emb|AL390859.18| Human DNA sequence from clone RP13-395E11 on chromosome 10 Contains a CpG island, complete sequence Length = 117526 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 tattggcccaagtccatggg 197 |||||||||||||||||||| Sbjct: 44600 tattggcccaagtccatggg 44581
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 111 aagtctattctcatcgatcccttatctg 138 |||||||||||||| |||||||||||| Sbjct: 1635066 aagtctattctcatatatcccttatctg 1635093
>gb|AC122152.3| Oryctolagus cuniculus clone LB1-297M16, complete sequence Length = 189392 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 111 aagtctattctcatcgatcccttatctg 138 |||||||||||||| |||||||||||| Sbjct: 86863 aagtctattctcatatatcccttatctg 86890 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,922,683 Number of Sequences: 3902068 Number of extensions: 3922683 Number of successful extensions: 65605 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65589 Number of HSP's gapped (non-prelim): 15 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)