ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4j09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009447.1| Triticum aestivum clone wlmk8.pk0015.h6:fis, full... 121 3e-24
2gb|AC132889.10| Mus musculus chromosome 5, clone RP24-267K12, co... 40 7.4
3gb|AY752713.1| Brassica oleracea var. gemmifera isolate ML13_33 ... 40 7.4
4gb|AC162689.3| Mus musculus chromosome 5, clone RP23-396K22, com... 40 7.4
5emb|AL390859.18| Human DNA sequence from clone RP13-395E11 on ch... 40 7.4
6gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 40 7.4
7gb|AC122152.3| Oryctolagus cuniculus clone LB1-297M16, complete ... 40 7.4

>gb|BT009447.1| Triticum aestivum clone wlmk8.pk0015.h6:fis, full insert mRNA
           sequence
          Length = 1206

 Score =  121 bits (61), Expect = 3e-24
 Identities = 100/113 (88%)
 Strand = Plus / Minus

                                                                       
Query: 416 cgccgccgtcatacagttattcctagttggacgcaagaccacctgcgcctgtcttattgc 475
           |||| |||||||||| ||| |||||||||||| ||  | |||||||||||||||||||||
Sbjct: 953 cgccaccgtcatacaattaatcctagttggactcagaatcacctgcgcctgtcttattgc 894

                                                                
Query: 476 gacaaacatccgcgagtttccgcggcagactgactaacagtagaccagtgata 528
           ||||||||||||| |||||||||||| ||||||||| |  |||||| ||||||
Sbjct: 893 gacaaacatccgcaagtttccgcggcggactgactaccgatagaccggtgata 841



 Score =  109 bits (55), Expect = 1e-20
 Identities = 116/134 (86%), Gaps = 3/134 (2%)
 Strand = Plus / Minus

                                                                        
Query: 251  gtcagaactgcctcaggagttcgattcatgtcgaggtccgaatacaaacgcagtttctgc 310
            |||||||  ||||||  |||| |||||||||||| ||| |||||||||| |||||| |||
Sbjct: 1131 gtcagaatggcctcacaagttggattcatgtcgacgtctgaatacaaacacagtttttgc 1072

                                                                        
Query: 311  ttagtttaaccagcacatgg-ctctggttttctgaccttg--gttacccagccgctgctg 367
            || ||||||| || |||||| | ||||||||| |||||||   |||||||||||||||||
Sbjct: 1071 ttggtttaactagtacatggcccctggttttccgaccttgttattacccagccgctgctg 1012

                          
Query: 368  gctcagcaatgtga 381
            ||||||||||||||
Sbjct: 1011 gctcagcaatgtga 998



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>gb|AC132889.10| Mus musculus chromosome 5, clone RP24-267K12, complete sequence
          Length = 168641

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    aaggaagaaaccacatcaag 113
             ||||||||||||||||||||
Sbjct: 69234 aaggaagaaaccacatcaag 69253



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>gb|AY752713.1| Brassica oleracea var. gemmifera isolate ML13_33 tRNA-Leu (trnL)
           gene, partial sequence; trnL-trnF intergenic spacer,
           complete sequence; and tRNA-Phe (trnF) gene, partial
           sequence; chloroplast
          Length = 793

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  tcaattggtagagcagaaga 61
           ||||||||||||||||||||
Sbjct: 750 tcaattggtagagcagaaga 769



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>gb|AC162689.3| Mus musculus chromosome 5, clone RP23-396K22, complete sequence
          Length = 168260

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     aaggaagaaaccacatcaag 113
              ||||||||||||||||||||
Sbjct: 133075 aaggaagaaaccacatcaag 133094



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>emb|AL390859.18| Human DNA sequence from clone RP13-395E11 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 117526

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   tattggcccaagtccatggg 197
             ||||||||||||||||||||
Sbjct: 44600 tattggcccaagtccatggg 44581



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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 111     aagtctattctcatcgatcccttatctg 138
               ||||||||||||||  ||||||||||||
Sbjct: 1635066 aagtctattctcatatatcccttatctg 1635093



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>gb|AC122152.3| Oryctolagus cuniculus clone LB1-297M16, complete sequence
          Length = 189392

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 111   aagtctattctcatcgatcccttatctg 138
             ||||||||||||||  ||||||||||||
Sbjct: 86863 aagtctattctcatatatcccttatctg 86890


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,922,683
Number of Sequences: 3902068
Number of extensions: 3922683
Number of successful extensions: 65605
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65589
Number of HSP's gapped (non-prelim): 15
length of query: 544
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 521
effective length of database: 17,143,297,704
effective search space: 8931658103784
effective search space used: 8931658103784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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