ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaak4j08 |
|---|---|
| Clone Library Name | barley_pub |
>ELI9_HORVU (P14897) Low molecular mass early light-inducible protein HV90,| chloroplast precursor (ELIP) Length = 172 Score = 77.0 bits (188), Expect = 1e-14 Identities = 39/46 (84%), Positives = 39/46 (84%) Frame = -1 Query: 259 QXESAEGRAXTIMNAXAELWNGRXXMLGLVALAATEIIXGAPFINV 122 Q ESAEGRA IMNA AELWNGR MLGLVALAATEII GAPFINV Sbjct: 127 QGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFINV 172
>ELI6_HORVU (P14896) Low molecular mass early light-inducible protein HV60,| chloroplast precursor (ELIP) Length = 167 Score = 74.7 bits (182), Expect = 6e-14 Identities = 37/46 (80%), Positives = 38/46 (82%) Frame = -1 Query: 259 QXESAEGRAXTIMNAXAELWNGRXXMLGLVALAATEIIXGAPFINV 122 Q ESAEGRA IMNA AELWNGR M+GLVALAATEII G PFINV Sbjct: 122 QGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFINV 167
>ELI5_HORVU (P14895) High molecular mass early light-inducible protein HV58,| chloroplast precursor (ELIP) Length = 231 Score = 62.8 bits (151), Expect = 2e-10 Identities = 29/46 (63%), Positives = 35/46 (76%) Frame = -1 Query: 259 QXESAEGRAXTIMNAXAELWNGRXXMLGLVALAATEIIXGAPFINV 122 Q +S E ++ I +A AELWNGR MLGLVALAATE I GAPF+N+ Sbjct: 186 QGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFVNI 231
>DS22_CRAPL (Q01931) Desiccation stress protein DSP-22, chloroplast precursor| Length = 199 Score = 49.7 bits (117), Expect = 2e-06 Identities = 23/43 (53%), Positives = 28/43 (65%) Frame = -1 Query: 250 SAEGRAXTIMNAXAELWNGRXXMLGLVALAATEIIXGAPFINV 122 S E + N+ AE+WNGR M+GLVALA TE + G P INV Sbjct: 157 SPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLINV 199
>ELI_PEA (P11432) Early light-induced protein, chloroplast precursor (ELIP)| Length = 196 Score = 48.1 bits (113), Expect = 6e-06 Identities = 22/44 (50%), Positives = 29/44 (65%) Frame = -1 Query: 259 QXESAEGRAXTIMNAXAELWNGRXXMLGLVALAATEIIXGAPFI 128 Q S E ++ +IM++ AE WNGR MLGLVALA TE + G + Sbjct: 153 QGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196
>HEMH_ORYSA (O22101) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)| (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) Length = 526 Score = 32.3 bits (72), Expect = 0.33 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -1 Query: 211 AELWNGRXXMLGLVALAATEIIXGAPFIN 125 AE WNGR ML ++AL E+ G F++ Sbjct: 489 AETWNGRAAMLAVLALLVLEVTTGEGFLH 517
>HEMH_ANASP (Q8YQR8) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 32.3 bits (72), Expect = 0.33 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = -1 Query: 223 MNAXAELWNGRXXMLGLVALAATEIIXGAPFINV 122 M + AE+WNGR MLG +AL E++ G +++ Sbjct: 351 MTSSAEVWNGRIAMLGFIAL-IIELVTGQGLLHM 383
>HEMH2_ARATH (O04921) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)| (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) Length = 512 Score = 32.3 bits (72), Expect = 0.33 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -1 Query: 211 AELWNGRXXMLGLVALAATEIIXGAPFIN 125 AE WNGR ML ++AL E+ G F++ Sbjct: 476 AETWNGRAAMLAVLALLVLEVTTGKGFLH 504
>HEMH_SYNY3 (P54225) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 31.2 bits (69), Expect = 0.73 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 223 MNAXAELWNGRXXMLGLVALAATEIIXG 140 + AE+WNGR MLG +AL E+I G Sbjct: 351 LTTAAEVWNGRLAMLGFIAL-LVELISG 377
>YCF17_CYAPA (P48367) Hypothetical 5.5 kDa protein ycf17| Length = 49 Score = 30.8 bits (68), Expect = 0.96 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -1 Query: 211 AELWNGRXXMLGLVALAATEIIXG 140 AE WNGR MLG +A TE + G Sbjct: 16 AENWNGRLAMLGFIAALLTESLTG 39
>HEMH_SYNEL (Q8DGU6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 30.4 bits (67), Expect = 1.3 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = -1 Query: 223 MNAXAELWNGRXXMLGLVALAATEIIXG 140 M + AE WNGR MLG +AL E+I G Sbjct: 352 MTSAAERWNGRLAMLGFLAL-MIELISG 378
>YCF17_PORPU (P51355) Hypothetical 5.5 kDa protein ycf17 (ORF48)| Length = 48 Score = 30.0 bits (66), Expect = 1.6 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -1 Query: 211 AELWNGRXXMLGLVALAATEIIXG 140 AE WNGR M+G +A+ E++ G Sbjct: 14 AETWNGRFAMIGFMAVIFIELVTG 37
>HEMH_SYNP6 (Q5N2B2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -1 Query: 211 AELWNGRXXMLGLVALAATEIIXG 140 AE+WNGR MLG +AL E++ G Sbjct: 355 AEVWNGRIAMLGFLAL-LVELLTG 377
>HEMH_PROMM (Q7V6C6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 223 MNAXAELWNGRXXMLGLVALAATEIIXG 140 +N +E WNGR MLG A E+I G Sbjct: 355 LNTSSEAWNGRIAMLGFAAF-LLELISG 381
>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor| [Contains: LH35 protein 1; LH35 protein 2] (Fragment) Length = 331 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -1 Query: 211 AELWNGRXXMLGLVALAATEIIXGAPFINV*NKLAF 104 AE++NGR ML +V E++ + V NK+ F Sbjct: 10 AEVFNGRLAMLAIVGCVYPELLGNGVWFEVWNKVDF 45 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,999,586 Number of Sequences: 219361 Number of extensions: 280555 Number of successful extensions: 489 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 489 length of database: 80,573,946 effective HSP length: 61 effective length of database: 67,192,925 effective search space used: 1612630200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
