>emb|X15692.1|HVLP90 Barley mRNA for chloroplast low molecular mass early
           light-inducible protein (ELIP) (clone HV90)
          Length = 660

 Score =  200 bits (101), Expect = 2e-48
 Identities = 163/186 (87%)
 Strand = Plus / Minus

                                                                       
Query: 74  taagtacaagttgtgttatcgtgtcggcaagaaagctagtttattctacacgttgatgaa 133
           |||||||| ||||||||||| ||||| ||  ||||||| |||||||||||||||||||||
Sbjct: 594 taagtacatgttgtgttatcctgtcgacagcaaagctattttattctacacgttgatgaa 535

                                                                       
Query: 134 gggggcgcccgngatgatctccgtggccgccagagcgacgagtccgagcatggnnaaacg 193
            || ||||| | ||||||||| ||||| ||||| |||||||||||||||||||  || ||
Sbjct: 534 aggcgcgccggtgatgatctcggtggcggccagcgcgacgagtccgagcatggcgaagcg 475

                                                                       
Query: 194 gccattccagagctccgcgntggcgttcatgatggtgncngctctgccctcggcgctctc 253
           ||| |||||||| |||||| ||||||||||||||| | | ||||||||||||||||||||
Sbjct: 474 gccgttccagagttccgcgttggcgttcatgatggcgccggctctgccctcggcgctctc 415

                 
Query: 254 gncctg 259
           | ||||
Sbjct: 414 gccctg 409

>emb|X15691.1|HVLP60 Barley mRNA for chloroplast low molecular mass early
           light-inducible protein (ELIP) (clone HV60)
          Length = 764

 Score =  184 bits (93), Expect = 9e-44
 Identities = 161/186 (86%)
 Strand = Plus / Minus

                                                                       
Query: 74  taagtacaagttgtgttatcgtgtcggcaagaaagctagtttattctacacgttgatgaa 133
           |||||||| |||||||||||  |||| ||  ||||||| ||| |||||||||||||||||
Sbjct: 675 taagtacaggttgtgttatccggtcgacagcaaagctattttcttctacacgttgatgaa 616

                                                                       
Query: 134 gggggcgcccgngatgatctccgtggccgccagagcgacgagtccgagcatggnnaaacg 193
           ||||| ||| | ||||||||| ||||| || || ||||||||||||| |||||  || ||
Sbjct: 615 gggggtgccggtgatgatctcggtggcggcgagcgcgacgagtccgatcatggcgaagcg 556

                                                                       
Query: 194 gccattccagagctccgcgntggcgttcatgatggtgncngctctgccctcggcgctctc 253
           ||| ||||||||||||||| ||||||||||||||| | | ||||||||||||||||||||
Sbjct: 555 gccgttccagagctccgcgttggcgttcatgatggcgccggctctgccctcggcgctctc 496

                 
Query: 254 gncctg 259
           | ||||
Sbjct: 495 gccctg 490

>dbj|AB019617.1| Triticum aestivum wcr (wheat cold-regulated) 12 mRNA for early
           light-inducible protein (ELIP), complete cds
          Length = 818

 Score =  174 bits (88), Expect = 9e-41
 Identities = 121/134 (90%)
 Strand = Plus / Minus

                                                                       
Query: 120 tacacgttgatgaagggggcgcccgngatgatctccgtggccgccagagcgacgagtccg 179
           ||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||
Sbjct: 638 tacacgttgatgaagggcgcgccagtgatgatctccgttgccgccagagcgacgagtccg 579

                                                                       
Query: 180 agcatggnnaaacggccattccagagctccgcgntggcgttcatgatggtgncngctctg 239
           |||||||  || ||||| ||||||||||||||| |||||||||||||| |  | ||||||
Sbjct: 578 agcatggcgaagcggccgttccagagctccgcgttggcgttcatgatgataccggctctg 519

                         
Query: 240 ccctcggcgctctc 253
           ||||||||||||||
Sbjct: 518 ccctcggcgctctc 505

>gb|AY105095.1| Zea mays PCO131564 mRNA sequence
          Length = 907

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                     
Query: 168 gcgacgagtccgagcatggnnaaacggccattccagagctccgcgntggcgttcatga 225
           |||||||| ||||||||||  || ||||| ||||||||||| ||| ||||| ||||||
Sbjct: 226 gcgacgaggccgagcatggcgaagcggccgttccagagctcggcgttggcgctcatga 169

>gb|AF365951.1|AF365951 Zea mays early light-inducible protein ELIP mRNA, complete cds;
           nuclear gene for chloroplast product
          Length = 852

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 168 gcgacgagtccgagcatggnnaaacggccattccagagctccgcgntggcgttcatga 225
           |||||||| ||||||||||  || ||||| ||||||||||| |||  |||| ||||||
Sbjct: 604 gcgacgaggccgagcatggcgaagcggccgttccagagctcggcgtcggcggtcatga 547

>ref|XM_476845.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 564

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 168 gcgacgagtccgagcatggnnaaacggccattccagagctc 208
           |||||||| ||||||||||  || ||||| |||||||||||
Sbjct: 515 gcgacgaggccgagcatggcgaagcggccgttccagagctc 475

>ref|XM_476844.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 603

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 168 gcgacgagtccgagcatggnnaaacggccattccagagctc 208
           |||||||| ||||||||||  || ||||| |||||||||||
Sbjct: 554 gcgacgaggccgagcatggcgaagcggccgttccagagctc 514

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                        
Query: 168     gcgacgagtccgagcatggnnaaacggccattccagagctc 208
               |||||||| ||||||||||  || ||||| |||||||||||
Sbjct: 4178785 gcgacgaggccgagcatggcgaagcggccgttccagagctc 4178745



 Score = 46.1 bits (23), Expect = 0.054
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                        
Query: 168     gcgacgagtccgagcatggnnaaacggccattccagagctc 208
               |||||||| ||||||||||  || ||||| |||||||||||
Sbjct: 4176344 gcgacgaggccgagcatggcgaagcggccgttccagagctc 4176304

>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1361_E02
          Length = 100168

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 168   gcgacgagtccgagcatggnnaaacggccattccagagctc 208
             |||||||| ||||||||||  || ||||| |||||||||||
Sbjct: 62407 gcgacgaggccgagcatggcgaagcggccgttccagagctc 62367



 Score = 46.1 bits (23), Expect = 0.054
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 168   gcgacgagtccgagcatggnnaaacggccattccagagctc 208
             |||||||| ||||||||||  || ||||| |||||||||||
Sbjct: 59966 gcgacgaggccgagcatggcgaagcggccgttccagagctc 59926

>emb|X15693.1|HVLP58 Barley mRNA for chloroplast high molecular mass early
           light-inducible protein (ELIP) (clone HV58)
          Length = 860

 Score = 46.1 bits (23), Expect = 0.054
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                       
Query: 125 gttgatgaagggggcgcccgngatgatctccgtggccgccagagcgacgagtccgagcat 184
           ||||| ||| || ||||| | ||||| ||| ||||| || || |||||||| ||||||||
Sbjct: 772 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 713

                                   
Query: 185 ggnnaaacggccattccagagctc 208
            |  || ||||| |||||||||||
Sbjct: 712 agcgaagcggccgttccagagctc 689

>ref|XM_618149.2| PREDICTED: Bos taurus similar to Na+/K+ -ATPase alpha 4 subunit
            isoform 1 (LOC537960), mRNA
          Length = 3129

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 127  tgatgaagggggcgcccgngatgatct 153
            |||||||||||||||||| || |||||
Sbjct: 1577 tgatgaagggggcgcccgagaggatct 1603

>emb|AL158840.14| Human DNA sequence from clone RP11-181B18 on chromosome 1 Contains part
             of gene KIAA1365 and a novel gene, complete sequence
          Length = 87665

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    tagaataagtacaagttgtg 88
             ||||||||||||||||||||
Sbjct: 64174 tagaataagtacaagttgtg 64155


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 958,819
Number of Sequences: 3902068
Number of extensions: 958819
Number of successful extensions: 12596
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12577
Number of HSP's gapped (non-prelim): 19
length of query: 259
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 237
effective length of database: 17,147,199,772
effective search space: 4063886345964
effective search space used: 4063886345964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)