ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaak4j05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059049.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 3e-92
2dbj|AK068554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 3e-73
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
4dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
5dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
6gb|BT012883.1| Lycopersicon esculentum clone 113986R, mRNA sequence 58 3e-05
7gb|AC117668.9| Mus musculus, clone RP23-367H12, complete sequence 44 0.51
8gb|AC112203.2| Homo sapiens chromosome 5 clone RP11-72K17, compl... 44 0.51
9gb|AC154703.2| Mus musculus BAC clone RP24-349H1 from chromosome... 44 0.51
10ref|NM_101549.3| Arabidopsis thaliana unknown protein AT1G16880 ... 42 2.0
11ref|NM_010864.1| Mus musculus myosin Va (Myo5a), mRNA 42 2.0
12gb|AC110822.6| Mus musculus BAC clone RP24-226H7 from chromosome... 42 2.0
13emb|AL161444.18| Human DNA sequence from clone RP11-312C2 on chr... 42 2.0
14emb|X57377.1|MMDILUTE Mouse dilute myosin heavy chain gene for n... 42 2.0
15ref|NM_022178.1| Rattus norvegicus myosin Va (Myo5a), mRNA 42 2.0
16gb|BT006317.1| Arabidopsis thaliana At1g16880 mRNA, complete cds 42 2.0
17dbj|AK002362.1| Mus musculus adult male kidney cDNA, RIKEN full-... 42 2.0
18gb|AF386988.1|AF386988 Arabidopsis thaliana Unknown protein (F6I... 42 2.0
19emb|BX814468.1|CNS0AC2H Arabidopsis thaliana Full-length cDNA Co... 42 2.0
20emb|BX814192.1|CNS0AC6C Arabidopsis thaliana Full-length cDNA Co... 42 2.0
21emb|BX813743.1|CNS0AC5W Arabidopsis thaliana Full-length cDNA Co... 42 2.0
22emb|BX841809.1|CNS09Y1P Arabidopsis thaliana Full-length cDNA Co... 42 2.0
23emb|CT033761.14| Mouse DNA sequence from clone RP23-203P12 on ch... 42 2.0
24gb|AC133947.3| Mus musculus BAC clone RP24-189I2 from 9, complet... 42 2.0
25dbj|AB035736.1| Rattus norvegicus Myo5a mRNA for myosin-Va, comp... 42 2.0
26ref|NM_180459.1| Arabidopsis thaliana protein binding / ubiquiti... 40 7.9
27gb|AC127028.18| Mus musculus chromosome 18, clone RP23-345J21, c... 40 7.9
28gb|BT000865.1| Arabidopsis thaliana At5g08140/T22D6_80 mRNA, com... 40 7.9
29gb|AC102556.7| Mus musculus chromosome 18, clone RP23-177F9, com... 40 7.9
30emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BA... 40 7.9
31gb|AC122725.30| Medicago truncatula clone mth2-4c11, complete se... 40 7.9
32gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete s... 40 7.9
33gb|AC069542.7| Homo sapiens chromosome 10 clone RP11-390B4, comp... 40 7.9
34gb|AC091184.6| Homo sapiens chromosome 8, clone RP11-353O11, com... 40 7.9
35gb|AY058122.1| Arabidopsis thaliana AT5g08140/T22D6_80 mRNA, com... 40 7.9
36dbj|AK221247.1| Arabidopsis thaliana mRNA for hypothetical prote... 40 7.9
37dbj|AK220636.1| Arabidopsis thaliana mRNA for hypothetical prote... 40 7.9
38emb|BX829848.1|CNS0A025 Arabidopsis thaliana Full-length cDNA Co... 40 7.9
39emb|BX831414.1|CNS09ZD4 Arabidopsis thaliana Full-length cDNA Co... 40 7.9
40gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome... 40 7.9
41gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17... 40 7.9
42gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I... 40 7.9
43dbj|AK117658.1| Arabidopsis thaliana At5g08139 mRNA for unknown ... 40 7.9
44dbj|AP002379.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.9
45dbj|AP003730.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.9
46emb|AL844546.8| Mouse DNA sequence from clone RP23-243I3 on chro... 40 7.9 
>dbj|AK059049.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-E01, full
           insert sequence
          Length = 430

 Score =  347 bits (175), Expect = 3e-92
 Identities = 277/311 (89%)
 Strand = Plus / Minus

                                                                       
Query: 112 atctgcctagaaactggcatcctctgtcgtcggcctcctcaagaaataacgcaagctatt 171
           |||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 311 atctgcctagtaactgccctcctctgtcgtcggcctcctcaagaaatagcgcaagctatt 252

                                                                       
Query: 172 agcaagaacctgttgcaaagccttgattaatggcttgccccggtaactgacatggaattt 231
           |||||||||||| ||||| || ||||| ||||| || ||||  |||||||||||||||||
Sbjct: 251 agcaagaacctgctgcaaggctttgatcaatggtttacccctataactgacatggaattt 192

                                                                       
Query: 232 tgccttggccagtagcccctcggtgtcaaattctccagattggacagtgatattgatgtc 291
           ||| || |||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 191 tgctttagccagtaggccctcagtgtcaaattctccagattggacggtgatgttgatgtc 132

                                                                       
Query: 292 agcaatgatcttaactagatcaaccaacaaccctggacggtcagctgattccacaacaag 351
           | ||||||||||||| || ||||||||||| ||||| |||||||||| |||||| |||||
Sbjct: 131 atcaatgatcttaacaaggtcaaccaacaaacctggtcggtcagctgtttccactacaag 72

                                                                       
Query: 352 taaacttctttcaggaccatcgtcatagatttctatgtgagttgctatgtccacatcaac 411
           ||| ||||| ||||| ||||| ||||| || |||||||| ||||||||||||||||||||
Sbjct: 71  taagcttctgtcagggccatcatcatatatgtctatgtgggttgctatgtccacatcaac 12

                      
Query: 412 cacttccgtag 422
           || ||| ||||
Sbjct: 11  cagttctgtag 1
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>dbj|AK068554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155B11, full
            insert sequence
          Length = 1782

 Score =  283 bits (143), Expect = 3e-73
 Identities = 218/243 (89%)
 Strand = Plus / Minus

                                                                        
Query: 112  atctgcctagaaactggcatcctctgtcgtcggcctcctcaagaaataacgcaagctatt 171
            |||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1397 atctgcctagtaactgccctcctctgtcgtcggcctcctcaagaaatagcgcaagctatt 1338

                                                                        
Query: 172  agcaagaacctgttgcaaagccttgattaatggcttgccccggtaactgacatggaattt 231
            |||||||||||| ||||| || ||||| ||||| || ||||  |||||||||||||||||
Sbjct: 1337 agcaagaacctgctgcaaggctttgatcaatggtttacccctataactgacatggaattt 1278

                                                                        
Query: 232  tgccttggccagtagcccctcggtgtcaaattctccagattggacagtgatattgatgtc 291
            ||| || |||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1277 tgctttagccagtaggccctcagtgtcaaattctccagattggacggtgatgttgatgtc 1218

                                                                        
Query: 292  agcaatgatcttaactagatcaaccaacaaccctggacggtcagctgattccacaacaag 351
            | ||||||||||||| || ||||||||||| ||||| |||||||||| |||||| |||||
Sbjct: 1217 atcaatgatcttaacaaggtcaaccaacaaacctggtcggtcagctgtttccactacaag 1158

               
Query: 352  taa 354
            |||
Sbjct: 1157 taa 1155



 Score =  210 bits (106), Expect = 4e-51
 Identities = 193/222 (86%)
 Strand = Plus / Minus

                                                                       
Query: 356 cttctttcaggaccatcgtcatagatttctatgtgagttgctatgtccacatcaaccact 415
           ||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||||| |
Sbjct: 780 cttctgtcagggccatcatcatatatgtctatgtgggttgctatgtccacatcaaccagt 721

                                                                       
Query: 416 tccgtagggggctctagcccaaaagttgcacccatggccaattgactgctagcttcagga 475
           || |||||||||||| | ||||||||||||||||  |||||||| ||||||||||| || 
Sbjct: 720 tctgtagggggctctggaccaaaagttgcacccagagccaattggctgctagcttctggg 661

                                                                       
Query: 476 tgatattcaagcatgttgttgataattgtcagtcttactgcttctaacaactccgggtca 535
           || || | || ||||||||| ||||||||||| | |||||||||||||||||| || |||
Sbjct: 660 tggtactgaatcatgttgtttataattgtcagccgtactgcttctaacaactctggttca 601

                                                     
Query: 536 tcaattttgcgaccagttgacgactttgttatagcaaactta 577
            |||||||||||||||| ||| | ||||||||||| ||||||
Sbjct: 600 ccaattttgcgaccagtcgacaattttgttatagctaactta 559
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                           
Query: 249     cctcggtgtcaaattctccagattggacagtgatattgatgtcagcaatgatcttaacta 308
               |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
Sbjct: 8663409 cctcagtgtcaaattctccagattggacggtgatgttgatgtcatcaatgatcttaacaa 8663468

                                                             
Query: 309     gatcaaccaacaaccctggacggtcagctgattccacaacaagtaa 354
               | ||||||||||| ||||| |||||||||| |||||| ||||||||
Sbjct: 8663469 ggtcaaccaacaaacctggtcggtcagctgtttccactacaagtaa 8663514



 Score =  111 bits (56), Expect = 3e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                           
Query: 112     atctgcctagaaactggcatcctctgtcgtcggcctcctcaagaaataacgcaagctatt 171
               |||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8663000 atctgcctagtaactgccctcctctgtcgtcggcctcctcaagaaatagcgcaagctatt 8663059

                           
Query: 172     agcaagaacctg 183
               ||||||||||||
Sbjct: 8663060 agcaagaacctg 8663071



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                           
Query: 487     catgttgttgataattgtcagtcttactgcttctaacaactccgggtcatcaattttgcg 546
               ||||||||| ||||||||||| | |||||||||||||||||| || ||| ||||||||||
Sbjct: 8664325 catgttgtttataattgtcagccgtactgcttctaacaactctggttcaccaattttgcg 8664384

                     
Query: 547     accagt 552
               ||||||
Sbjct: 8664385 accagt 8664390



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                           
Query: 410     accacttccgtagggggctctagcccaaaagttgcacccatggccaattgactgctagct 469
               |||| ||| |||||||||||| | ||||||||||||||||  |||||||| |||||||||
Sbjct: 8664161 accagttctgtagggggctctggaccaaaagttgcacccagagccaattggctgctagct 8664220

                 
Query: 470     tc 471
               ||
Sbjct: 8664221 tc 8664222



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                        
Query: 356     cttctttcaggaccatcgtcatagatttctatgtgagttgctatgtccacatcaacc 412
               ||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct: 8663889 cttctgtcagggccatcatcatatatgtctatgtgggttgctatgtccacatcaacc 8663945



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                           
Query: 179     acctgttgcaaagccttgattaatggcttgccccggtaactgacatggaattttgccttg 238
               ||||| ||||| || ||||| ||||| || ||||  |||||||||||||||||||| || 
Sbjct: 8663258 acctgctgcaaggctttgatcaatggtttacccctataactgacatggaattttgcttta 8663317

                            
Query: 239     gccagtagcccct 251
               |||||||| ||||
Sbjct: 8663318 gccagtaggccct 8663330
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>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0087F21
          Length = 187401

 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                          
Query: 249    cctcggtgtcaaattctccagattggacagtgatattgatgtcagcaatgatcttaacta 308
              |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
Sbjct: 175320 cctcagtgtcaaattctccagattggacggtgatgttgatgtcatcaatgatcttaacaa 175379

                                                            
Query: 309    gatcaaccaacaaccctggacggtcagctgattccacaacaagtaa 354
              | ||||||||||| ||||| |||||||||| |||||| ||||||||
Sbjct: 175380 ggtcaaccaacaaacctggtcggtcagctgtttccactacaagtaa 175425



 Score =  111 bits (56), Expect = 3e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                          
Query: 112    atctgcctagaaactggcatcctctgtcgtcggcctcctcaagaaataacgcaagctatt 171
              |||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 174911 atctgcctagtaactgccctcctctgtcgtcggcctcctcaagaaatagcgcaagctatt 174970

                          
Query: 172    agcaagaacctg 183
              ||||||||||||
Sbjct: 174971 agcaagaacctg 174982



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                          
Query: 487    catgttgttgataattgtcagtcttactgcttctaacaactccgggtcatcaattttgcg 546
              ||||||||| ||||||||||| | |||||||||||||||||| || ||| ||||||||||
Sbjct: 176236 catgttgtttataattgtcagccgtactgcttctaacaactctggttcaccaattttgcg 176295

                    
Query: 547    accagt 552
              ||||||
Sbjct: 176296 accagt 176301



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                          
Query: 410    accacttccgtagggggctctagcccaaaagttgcacccatggccaattgactgctagct 469
              |||| ||| |||||||||||| | ||||||||||||||||  |||||||| |||||||||
Sbjct: 176072 accagttctgtagggggctctggaccaaaagttgcacccagagccaattggctgctagct 176131

                
Query: 470    tc 471
              ||
Sbjct: 176132 tc 176133



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                       
Query: 356    cttctttcaggaccatcgtcatagatttctatgtgagttgctatgtccacatcaacc 412
              ||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct: 175800 cttctgtcagggccatcatcatatatgtctatgtgggttgctatgtccacatcaacc 175856



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                          
Query: 179    acctgttgcaaagccttgattaatggcttgccccggtaactgacatggaattttgccttg 238
              ||||| ||||| || ||||| ||||| || ||||  |||||||||||||||||||| || 
Sbjct: 175169 acctgctgcaaggctttgatcaatggtttacccctataactgacatggaattttgcttta 175228

                           
Query: 239    gccagtagcccct 251
              |||||||| ||||
Sbjct: 175229 gccagtaggccct 175241
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>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBb0070J06
          Length = 142303

 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                        
Query: 249  cctcggtgtcaaattctccagattggacagtgatattgatgtcagcaatgatcttaacta 308
            |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
Sbjct: 6388 cctcagtgtcaaattctccagattggacggtgatgttgatgtcatcaatgatcttaacaa 6447

                                                          
Query: 309  gatcaaccaacaaccctggacggtcagctgattccacaacaagtaa 354
            | ||||||||||| ||||| |||||||||| |||||| ||||||||
Sbjct: 6448 ggtcaaccaacaaacctggtcggtcagctgtttccactacaagtaa 6493



 Score =  111 bits (56), Expect = 3e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                        
Query: 112  atctgcctagaaactggcatcctctgtcgtcggcctcctcaagaaataacgcaagctatt 171
            |||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5979 atctgcctagtaactgccctcctctgtcgtcggcctcctcaagaaatagcgcaagctatt 6038

                        
Query: 172  agcaagaacctg 183
            ||||||||||||
Sbjct: 6039 agcaagaacctg 6050



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                        
Query: 487  catgttgttgataattgtcagtcttactgcttctaacaactccgggtcatcaattttgcg 546
            ||||||||| ||||||||||| | |||||||||||||||||| || ||| ||||||||||
Sbjct: 7304 catgttgtttataattgtcagccgtactgcttctaacaactctggttcaccaattttgcg 7363

                  
Query: 547  accagt 552
            ||||||
Sbjct: 7364 accagt 7369



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                        
Query: 410  accacttccgtagggggctctagcccaaaagttgcacccatggccaattgactgctagct 469
            |||| ||| |||||||||||| | ||||||||||||||||  |||||||| |||||||||
Sbjct: 7140 accagttctgtagggggctctggaccaaaagttgcacccagagccaattggctgctagct 7199

              
Query: 470  tc 471
            ||
Sbjct: 7200 tc 7201



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                     
Query: 356  cttctttcaggaccatcgtcatagatttctatgtgagttgctatgtccacatcaacc 412
            ||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct: 6868 cttctgtcagggccatcatcatatatgtctatgtgggttgctatgtccacatcaacc 6924



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                        
Query: 179  acctgttgcaaagccttgattaatggcttgccccggtaactgacatggaattttgccttg 238
            ||||| ||||| || ||||| ||||| || ||||  |||||||||||||||||||| || 
Sbjct: 6237 acctgctgcaaggctttgatcaatggtttacccctataactgacatggaattttgcttta 6296

                         
Query: 239  gccagtagcccct 251
            |||||||| ||||
Sbjct: 6297 gccagtaggccct 6309
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>gb|BT012883.1| Lycopersicon esculentum clone 113986R, mRNA sequence
          Length = 1501

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                        
Query: 350  agtaaacttctttcaggaccatcgtcatagatttctatgtgagttgctatgtccacatca 409
            ||||| |||| |||||||||||| |||||||  |  || |||||||||||||||||||||
Sbjct: 1123 agtaagcttcgttcaggaccatcatcatagacatggatatgagttgctatgtccacatca 1064

             
Query: 410  a 410
            |
Sbjct: 1063 a 1063



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 221  acatggaattttgccttggccagtagcccctcggtgtcaaattctcc 267
            ||||| ||||||||||| || || || ||||||||||||||||||||
Sbjct: 1252 acatgaaattttgccttagctagcagtccctcggtgtcaaattctcc 1206



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 146  ctcctcaagaaataacgcaagctattagcaagaacctgttg 186
            ||||||||| |||| |||||||| || ||||||||||||||
Sbjct: 1327 ctcctcaagtaatagcgcaagctgtttgcaagaacctgttg 1287
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>gb|AC117668.9| Mus musculus, clone RP23-367H12, complete sequence
          Length = 221526

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 482    tcaagcatgttgttgataattg 503
              ||||||||||||||||||||||
Sbjct: 197424 tcaagcatgttgttgataattg 197445
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>gb|AC112203.2| Homo sapiens chromosome 5 clone RP11-72K17, complete sequence
          Length = 165916

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 67    aaatatcatgtatcatgaacta 88
             ||||||||||||||||||||||
Sbjct: 96558 aaatatcatgtatcatgaacta 96537
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>gb|AC154703.2| Mus musculus BAC clone RP24-349H1 from chromosome 14, complete sequence
          Length = 154588

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 482    tcaagcatgttgttgataattg 503
              ||||||||||||||||||||||
Sbjct: 104125 tcaagcatgttgttgataattg 104104
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>ref|NM_101549.3| Arabidopsis thaliana unknown protein AT1G16880 transcript variant
           AT1G16880.1 mRNA, complete cds
          Length = 1188

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 248 ccctcggtgtcaaattctccagatt 272
           ||||||||||| |||||||||||||
Sbjct: 875 ccctcggtgtcgaattctccagatt 851
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>ref|NM_010864.1| Mus musculus myosin Va (Myo5a), mRNA
          Length = 7087

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 284  ttgatgtcagcaatgatctta 304
            |||||||||||||||||||||
Sbjct: 4640 ttgatgtcagcaatgatctta 4620
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>gb|AC110822.6| Mus musculus BAC clone RP24-226H7 from chromosome 9, complete sequence
          Length = 144131

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 284    ttgatgtcagcaatgatctta 304
              |||||||||||||||||||||
Sbjct: 141086 ttgatgtcagcaatgatctta 141066
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>emb|AL161444.18| Human DNA sequence from clone RP11-312C2 on chromosome 9, complete
             sequence
          Length = 150563

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 292   agcaatgatcttaactagatc 312
             |||||||||||||||||||||
Sbjct: 13075 agcaatgatcttaactagatc 13095
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>emb|X57377.1|MMDILUTE Mouse dilute myosin heavy chain gene for novel heavy chain with
            unique C-terminal region
          Length = 7087

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 284  ttgatgtcagcaatgatctta 304
            |||||||||||||||||||||
Sbjct: 4640 ttgatgtcagcaatgatctta 4620
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>ref|NM_022178.1| Rattus norvegicus myosin Va (Myo5a), mRNA
          Length = 5620

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 284  ttgatgtcagcaatgatctta 304
            |||||||||||||||||||||
Sbjct: 4565 ttgatgtcagcaatgatctta 4545
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>gb|BT006317.1| Arabidopsis thaliana At1g16880 mRNA, complete cds
          Length = 873

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 248 ccctcggtgtcaaattctccagatt 272
           ||||||||||| |||||||||||||
Sbjct: 743 ccctcggtgtcgaattctccagatt 719
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>dbj|AK002362.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:0610009A05 product:myosin Va, full insert
            sequence
          Length = 2641

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 284  ttgatgtcagcaatgatctta 304
            |||||||||||||||||||||
Sbjct: 1188 ttgatgtcagcaatgatctta 1168
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>gb|AF386988.1|AF386988 Arabidopsis thaliana Unknown protein (F6I1.12) mRNA, complete cds
          Length = 1103

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 248 ccctcggtgtcaaattctccagatt 272
           ||||||||||| |||||||||||||
Sbjct: 827 ccctcggtgtcgaattctccagatt 803
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>emb|BX814468.1|CNS0AC2H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB75ZF08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1109

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 248 ccctcggtgtcaaattctccagatt 272
           ||||||||||| |||||||||||||
Sbjct: 876 ccctcggtgtcgaattctccagatt 852
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>emb|BX814192.1|CNS0AC6C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB60ZC04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1133

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 248 ccctcggtgtcaaattctccagatt 272
           ||||||||||| |||||||||||||
Sbjct: 871 ccctcggtgtcgaattctccagatt 847
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>emb|BX813743.1|CNS0AC5W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB37ZF06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1122

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 248 ccctcggtgtcaaattctccagatt 272
           ||||||||||| |||||||||||||
Sbjct: 908 ccctcggtgtcgaattctccagatt 884
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>emb|BX841809.1|CNS09Y1P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS1ZA11 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1298

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 248  ccctcggtgtcaaattctccagatt 272
            ||||||||||| |||||||||||||
Sbjct: 1062 ccctcggtgtcgaattctccagatt 1038
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>emb|CT033761.14| Mouse DNA sequence from clone RP23-203P12 on chromosome 9, complete
              sequence
          Length = 208050

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 284    ttgatgtcagcaatgatctta 304
              |||||||||||||||||||||
Sbjct: 194998 ttgatgtcagcaatgatctta 194978
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>gb|AC133947.3| Mus musculus BAC clone RP24-189I2 from 9, complete sequence
          Length = 168997

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 284   ttgatgtcagcaatgatctta 304
             |||||||||||||||||||||
Sbjct: 22342 ttgatgtcagcaatgatctta 22322
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>dbj|AB035736.1| Rattus norvegicus Myo5a mRNA for myosin-Va, complete cds
          Length = 5620

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 284  ttgatgtcagcaatgatctta 304
            |||||||||||||||||||||
Sbjct: 4565 ttgatgtcagcaatgatctta 4545
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>ref|NM_180459.1| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
           zinc ion binding AT5G08139 mRNA, complete cds
          Length = 1520

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 agtgatattgatgtcagcaatgat 300
           |||||||||||||| |||||||||
Sbjct: 347 agtgatattgatgttagcaatgat 370
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>gb|AC127028.18| Mus musculus chromosome 18, clone RP23-345J21, complete sequence
          Length = 191473

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 216   aactgacatggaattttgccttgg 239
             |||||||||||| |||||||||||
Sbjct: 73697 aactgacatggagttttgccttgg 73720
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>gb|BT000865.1| Arabidopsis thaliana At5g08140/T22D6_80 mRNA, complete cds
          Length = 1131

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 agtgatattgatgtcagcaatgat 300
           |||||||||||||| |||||||||
Sbjct: 205 agtgatattgatgttagcaatgat 228
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>gb|AC102556.7| Mus musculus chromosome 18, clone RP23-177F9, complete sequence
          Length = 220133

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    aaagccttgattaatggctt 207
              ||||||||||||||||||||
Sbjct: 121501 aaagccttgattaatggctt 121520
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>emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project)
          Length = 89988

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 277   agtgatattgatgtcagcaatgat 300
             |||||||||||||| |||||||||
Sbjct: 43360 agtgatattgatgttagcaatgat 43383
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>gb|AC122725.30| Medicago truncatula clone mth2-4c11, complete sequence
          Length = 134892

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 67    aaatatcatgt-atcatgaactatcataaagt 97
             ||||||||||| || |||||||||||||||||
Sbjct: 11685 aaatatcatgtgatgatgaactatcataaagt 11716
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>gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete sequence
          Length = 130127

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 172   agcaagaacctgttgcaaagcctt 195
             |||| |||||||||||||||||||
Sbjct: 86311 agcatgaacctgttgcaaagcctt 86334
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>gb|AC069542.7| Homo sapiens chromosome 10 clone RP11-390B4, complete sequence
          Length = 166509

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   tttctatgtgagttgctatg 400
             ||||||||||||||||||||
Sbjct: 81786 tttctatgtgagttgctatg 81767
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>gb|AC091184.6| Homo sapiens chromosome 8, clone RP11-353O11, complete sequence
          Length = 142867

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   caaattctccagattggaca 277
             ||||||||||||||||||||
Sbjct: 44695 caaattctccagattggaca 44714
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>gb|AY058122.1| Arabidopsis thaliana AT5g08140/T22D6_80 mRNA, complete cds
          Length = 1472

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 agtgatattgatgtcagcaatgat 300
           |||||||||||||| |||||||||
Sbjct: 347 agtgatattgatgttagcaatgat 370
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>dbj|AK221247.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL24-02-J20
          Length = 1518

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 agtgatattgatgtcagcaatgat 300
           |||||||||||||| |||||||||
Sbjct: 327 agtgatattgatgttagcaatgat 350
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>dbj|AK220636.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL21-55-K19
          Length = 1480

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 agtgatattgatgtcagcaatgat 300
           |||||||||||||| |||||||||
Sbjct: 319 agtgatattgatgttagcaatgat 342
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>emb|BX829848.1|CNS0A025 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB40ZE11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1478

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 agtgatattgatgtcagcaatgat 300
           |||||||||||||| |||||||||
Sbjct: 335 agtgatattgatgttagcaatgat 358
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>emb|BX831414.1|CNS09ZD4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS88ZC12 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1448

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 agtgatattgatgtcagcaatgat 300
           |||||||||||||| |||||||||
Sbjct: 299 agtgatattgatgttagcaatgat 322
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>gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome 9, complete sequence
          Length = 175708

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    atgtatcatgaactatcata 93
             ||||||||||||||||||||
Sbjct: 69388 atgtatcatgaactatcata 69369
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>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence, complete
             sequence
          Length = 90498

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 249   cctcggtgtcaaattctccagatt 272
             |||||||||| |||||||||||||
Sbjct: 25126 cctcggtgtcgaattctccagatt 25149
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>gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I1 genomic sequence, complete
             sequence
          Length = 93677

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 249   cctcggtgtcaaattctccagatt 272
             |||||||||| |||||||||||||
Sbjct: 71823 cctcggtgtcgaattctccagatt 71846
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>dbj|AK117658.1| Arabidopsis thaliana At5g08139 mRNA for unknown protein, complete
           cds, clone: RAFL17-31-L11
          Length = 1520

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 277 agtgatattgatgtcagcaatgat 300
           |||||||||||||| |||||||||
Sbjct: 347 agtgatattgatgttagcaatgat 370
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>dbj|AP002379.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-463F4, complete
              sequence
          Length = 215986

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    caatgatcttaactagatca 313
              ||||||||||||||||||||
Sbjct: 131056 caatgatcttaactagatca 131037
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>dbj|AP003730.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-379J13, complete
              sequences
          Length = 226171

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    caatgatcttaactagatca 313
              ||||||||||||||||||||
Sbjct: 214171 caatgatcttaactagatca 214152
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>emb|AL844546.8| Mouse DNA sequence from clone RP23-243I3 on chromosome 2, complete
             sequence
          Length = 170475

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   ccagtagcccctcggtgtca 259
             ||||||||||||||||||||
Sbjct: 49896 ccagtagcccctcggtgtca 49877


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,455,525
Number of Sequences: 3902068
Number of extensions: 4455525
Number of successful extensions: 79836
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 79707
Number of HSP's gapped (non-prelim): 129
length of query: 581
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 558
effective length of database: 17,143,297,704
effective search space: 9565960118832
effective search space used: 9565960118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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